RNA–Protein interactions for RNA: ENST00000545083.1

CHD4-212, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 511 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-212ENST00000545083 ALS2Q96Q42 1657 aa14.11□□□□□ -0.15
CHD4-212ENST00000545083 PRR36Q9H6K5 1346 aa14.11□□□□□ -0.15
CHD4-212ENST00000545083 DHX57Q6P158 1386 aaKnown RBP14.1□□□□□ -0.15
CHD4-212ENST00000545083 ACIN1Q9UKV3 1341 aaKnown RBP14.1□□□□□ -0.15
CHD4-212ENST00000545083 ADGRB2O60241 1585 aa14.09□□□□□ -0.15
CHD4-212ENST00000545083 CRYBG1Q9Y4K1 1723 aa14.09□□□□□ -0.15
CHD4-212ENST00000545083 SPATA31A1Q5TZJ5 1347 aa14.09□□□□□ -0.15
CHD4-212ENST00000545083 APBA3O96018 575 aa14.08□□□□□ -0.16
CHD4-212ENST00000545083 FAM196AQ6ZSG2 479 aa14.08□□□□□ -0.16
CHD4-212ENST00000545083 MPHOSPH9Q99550 1183 aa14.08□□□□□ -0.16
CHD4-212ENST00000545083 HIRIP3Q9BW71 556 aaPredicted RBP14.08□□□□□ -0.16
CHD4-212ENST00000545083 PRDM11Q9NQV5 511 aa14.08□□□□□ -0.16
CHD4-212ENST00000545083 POGKQ9P215 609 aa14.08□□□□□ -0.16
CHD4-212ENST00000545083 GPRASP1Q5JY77 1395 aa14.08□□□□□ -0.16
CHD4-212ENST00000545083 DLC1Q96QB1 1528 aa14.07□□□□□ -0.16
CHD4-212ENST00000545083 PARD3Q8TEW0 1356 aa14.07□□□□□ -0.16
CHD4-212ENST00000545083 CHRNA2Q15822 529 aa14.06□□□□□ -0.16
CHD4-212ENST00000545083 KIAA0232Q92628 1395 aa14.06□□□□□ -0.16
CHD4-212ENST00000545083 RREB1Q92766 1687 aa14.05□□□□□ -0.16
CHD4-212ENST00000545083 STRN4Q9NRL3 753 aa14.05□□□□□ -0.16
CHD4-212ENST00000545083 MINK1Q8N4C8 1332 aaPredicted RBP14.05□□□□□ -0.16
CHD4-212ENST00000545083 NUP188Q5SRE5 1749 aa14.04□□□□□ -0.16
CHD4-212ENST00000545083 PAK3O75914 559 aaPredicted RBP14.04□□□□□ -0.16
CHD4-212ENST00000545083 TULP4Q9NRJ4 1543 aa14.04□□□□□ -0.16
CHD4-212ENST00000545083 ADGRB1O14514 1584 aa14.04□□□□□ -0.16
CHD4-212ENST00000545083 NGDNQ8NEJ9 315 aaKnown RBP14.03□□□□□ -0.16
CHD4-212ENST00000545083 USP35Q9P2H5 1018 aa14.03□□□□□ -0.16
CHD4-212ENST00000545083 TRAK1Q9UPV9 953 aa14.03□□□□□ -0.16
CHD4-212ENST00000545083 WASLO00401 505 aaPredicted RBP14.02□□□□□ -0.17
CHD4-212ENST00000545083 ZC3H6P61129 1189 aaKnown RBP14.02□□□□□ -0.17
CHD4-212ENST00000545083 NBPF8Q3BBV2 869 aa14.01□□□□□ -0.17
CHD4-212ENST00000545083 NBPF14Q5TI25 921 aa14.01□□□□□ -0.17
CHD4-212ENST00000545083 SPON1Q9HCB6 807 aa14.01□□□□□ -0.17
CHD4-212ENST00000545083 SSH2Q76I76 1423 aa14□□□□□ -0.17
CHD4-212ENST00000545083 EIF3AQ14152 1382 aaKnown RBP14□□□□□ -0.17
CHD4-212ENST00000545083 KCNQ2O43526 872 aa14□□□□□ -0.17
CHD4-212ENST00000545083 PDE3BQ13370 1112 aa14□□□□□ -0.17
CHD4-212ENST00000545083 NUTM2GQ5VZR2 741 aa14□□□□□ -0.17
CHD4-212ENST00000545083 BARGINQ6ZT62 677 aa14□□□□□ -0.17
CHD4-212ENST00000545083 PHRF1Q9P1Y6 1649 aaKnown RBP14□□□□□ -0.17
CHD4-212ENST00000545083 PPP1R1BQ9UD71 204 aaPredicted RBP13.99□□□□□ -0.17
CHD4-212ENST00000545083 NINLQ9Y2I6 1382 aa13.98□□□□□ -0.17
CHD4-212ENST00000545083 LARP1Q6PKG0 1096 aaKnown RBP13.98□□□□□ -0.17
CHD4-212ENST00000545083 ATP7BP35670 1465 aa13.98□□□□□ -0.17
CHD4-212ENST00000545083 CAMTA1Q9Y6Y1 1673 aa13.98□□□□□ -0.17
CHD4-212ENST00000545083 EVA1CP58658 441 aa13.96□□□□□ -0.17
CHD4-212ENST00000545083 TCP11L2Q8N4U5 519 aa13.96□□□□□ -0.17
CHD4-212ENST00000545083 NUDT16Q96DE0 195 aaKnown RBP13.96□□□□□ -0.17
CHD4-212ENST00000545083 ANO8Q9HCE9 1232 aaPredicted RBP13.96□□□□□ -0.17
CHD4-212ENST00000545083 UTRNP46939 3433 aa13.95□□□□□ -0.18
CHD4-212ENST00000545083 NRKQ7Z2Y5 1582 aa13.95□□□□□ -0.18
CHD4-212ENST00000545083 PDGFDQ9GZP0 370 aaPredicted RBP13.94□□□□□ -0.18
CHD4-212ENST00000545083 LMO7Q8WWI1 1683 aa13.94□□□□□ -0.18
CHD4-212ENST00000545083 DCAF8L1A6NGE4 600 aa13.93□□□□□ -0.18
CHD4-212ENST00000545083 PTF1AQ7RTS3 328 aa13.92□□□□□ -0.18
CHD4-212ENST00000545083 ZNF784Q8NCA9 323 aaPredicted RBP13.92□□□□□ -0.18
CHD4-212ENST00000545083 POLR3AO14802 1390 aaPredicted RBP13.92□□□□□ -0.18
CHD4-212ENST00000545083 CPDO75976 1380 aa13.92□□□□□ -0.18
CHD4-212ENST00000545083 USP19O94966 1318 aa13.91□□□□□ -0.18
CHD4-212ENST00000545083 ACEP12821 1306 aa13.91□□□□□ -0.18
CHD4-212ENST00000545083 PEAK1Q9H792 1746 aa13.91□□□□□ -0.18
CHD4-212ENST00000545083 KDM2AQ9Y2K7 1162 aa13.91□□□□□ -0.18
CHD4-212ENST00000545083 THRAP3Q9Y2W1 955 aaKnown RBP13.91□□□□□ -0.18
CHD4-212ENST00000545083 CASZ1Q86V15 1759 aa13.91□□□□□ -0.18
CHD4-212ENST00000545083 ITSN1Q15811 1721 aa13.9□□□□□ -0.18
CHD4-212ENST00000545083 PARP4Q9UKK3 1724 aaKnown RBP13.9□□□□□ -0.18
CHD4-212ENST00000545083 CDK19Q9BWU1 502 aa13.9□□□□□ -0.18
CHD4-212ENST00000545083 COL5A2P05997 1499 aaPredicted RBP13.9□□□□□ -0.18
CHD4-212ENST00000545083 OVOS2A0A0G2JMS6 1433 aa13.9□□□□□ -0.19
CHD4-212ENST00000545083 OVOS2A0A0J9YW53 1432 aa13.9□□□□□ -0.19
CHD4-212ENST00000545083 OVOS2Q6IE36 1432 aa13.9□□□□□ -0.19
CHD4-212ENST00000545083 PLSCR1O15162 318 aa13.89□□□□□ -0.19
CHD4-212ENST00000545083 ZBTB7AO95365 584 aa13.89□□□□□ -0.19
CHD4-212ENST00000545083 PTGER2P43116 358 aa13.89□□□□□ -0.19
CHD4-212ENST00000545083 PROM2Q8N271 834 aa13.89□□□□□ -0.19
CHD4-212ENST00000545083 ABTB2Q8N961 1025 aa13.89□□□□□ -0.19
CHD4-212ENST00000545083 ARHGEF28Q8N1W1 1705 aaKnown RBP13.88□□□□□ -0.19
CHD4-212ENST00000545083 DCAF11Q8TEB1 546 aa13.88□□□□□ -0.19
CHD4-212ENST00000545083 MYOM1P52179 1685 aa13.88□□□□□ -0.19
CHD4-212ENST00000545083 TOPAZ1Q8N9V7 1692 aa13.88□□□□□ -0.19
CHD4-212ENST00000545083 RGPD3A6NKT7 1758 aaPredicted RBP13.87□□□□□ -0.19
CHD4-212ENST00000545083 RGPD4Q7Z3J3 1758 aa13.87□□□□□ -0.19
CHD4-212ENST00000545083 PLEKHG3A1L390 1219 aa13.87□□□□□ -0.19
CHD4-212ENST00000545083 GCP02774 474 aa13.87□□□□□ -0.19
CHD4-212ENST00000545083 CCDC61Q9Y6R9 512 aa13.87□□□□□ -0.19
CHD4-212ENST00000545083 CRB1P82279 1406 aa13.87□□□□□ -0.19
CHD4-212ENST00000545083 C11orf95C9JLR9 678 aaPredicted RBP13.86□□□□□ -0.19
CHD4-212ENST00000545083 ATF5Q9Y2D1 282 aaPredicted RBP13.86□□□□□ -0.19
CHD4-212ENST00000545083 LRRC37A3O60309 1634 aa13.86□□□□□ -0.19
CHD4-212ENST00000545083 SBF2Q86WG5 1849 aa13.85□□□□□ -0.19
CHD4-212ENST00000545083 SENP3-EIF4A1A0A087X0R7 540 aa13.85□□□□□ -0.19
CHD4-212ENST00000545083 BCL11BQ9C0K0 894 aaPredicted RBP13.85□□□□□ -0.19
CHD4-212ENST00000545083 ZBTB7CA1YPR0 619 aa13.84□□□□□ -0.19
CHD4-212ENST00000545083 DDB1Q16531 1140 aa13.84□□□□□ -0.19
CHD4-212ENST00000545083 NLRP13Q86W25 1043 aa13.84□□□□□ -0.19
CHD4-212ENST00000545083 MARCH10Q8NA82 808 aaPredicted RBP13.84□□□□□ -0.19
CHD4-212ENST00000545083 SYT17Q9BSW7 474 aa13.84□□□□□ -0.19
CHD4-212ENST00000545083 FHDC1Q9C0D6 1143 aaPredicted RBP13.84□□□□□ -0.19
CHD4-212ENST00000545083 AATKQ6ZMQ8 1374 aa13.82□□□□□ -0.2
CHD4-212ENST00000545083 C1QTNF8P60827 252 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms