RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 STK26Q9P289 416 aa10.39□□□□□ -0.75
PDLIM5-221ENST00000542407 ABCC11Q96J66 1382 aa10.39□□□□□ -0.75
PDLIM5-221ENST00000542407 CD163L1Q9NR16 1453 aa10.39□□□□□ -0.75
PDLIM5-221ENST00000542407 CPS1P31327 1500 aa10.39□□□□□ -0.75
PDLIM5-221ENST00000542407 RRP9O43818 475 aaKnown RBP10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 CNPY4Q8N129 248 aa10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 PRAM1Q96QH2 718 aa10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 METP08581 1390 aa10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 ANKRD36BQ8N2N9 1353 aa10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 TECPR2O15040 1411 aa10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 USP35Q9P2H5 1018 aa10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 SLIT1O75093 1534 aa10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 ARHGAP23Q9P227 1491 aa10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 NINLQ9Y2I6 1382 aa10.38□□□□□ -0.75
PDLIM5-221ENST00000542407 ADAMTS13Q76LX8 1427 aa10.37□□□□□ -0.75
PDLIM5-221ENST00000542407 PLEKHH1Q9ULM0 1364 aa10.37□□□□□ -0.75
PDLIM5-221ENST00000542407 CABP2Q9NPB3 220 aa10.37□□□□□ -0.75
PDLIM5-221ENST00000542407 MED14O60244 1454 aa10.37□□□□□ -0.75
PDLIM5-221ENST00000542407 CEBPAP49715 358 aaPredicted RBP10.36□□□□□ -0.75
PDLIM5-221ENST00000542407 SAFB2Q14151 953 aaKnown RBP eCLIP10.36□□□□□ -0.75
PDLIM5-221ENST00000542407 GSE1Q14687 1217 aa10.36□□□□□ -0.75
PDLIM5-221ENST00000542407 NCLP19338 710 aaKnown RBP10.36□□□□□ -0.75
PDLIM5-221ENST00000542407 PRDM4Q9UKN5 801 aa10.36□□□□□ -0.75
PDLIM5-221ENST00000542407 SHPRHQ149N8 1683 aa10.36□□□□□ -0.75
PDLIM5-221ENST00000542407 PPM1GO15355 546 aaPredicted RBP10.35□□□□□ -0.75
PDLIM5-221ENST00000542407 A0A1W2PP64 1363 aa10.35□□□□□ -0.75
PDLIM5-221ENST00000542407 ATAD2Q6PL18 1390 aa10.35□□□□□ -0.75
PDLIM5-221ENST00000542407 PLEKHG1Q9ULL1 1385 aa10.35□□□□□ -0.75
PDLIM5-221ENST00000542407 MINK1Q8N4C8 1332 aaPredicted RBP10.35□□□□□ -0.75
PDLIM5-221ENST00000542407 FAM135BQ49AJ0 1406 aa10.35□□□□□ -0.75
PDLIM5-221ENST00000542407 ANKRD26Q9UPS8 1709 aa10.34□□□□□ -0.75
PDLIM5-221ENST00000542407 NUDCQ9Y266 331 aa10.34□□□□□ -0.75
PDLIM5-221ENST00000542407 CCDC9Q9Y3X0 531 aaKnown RBP10.34□□□□□ -0.75
PDLIM5-221ENST00000542407 PRDM10Q9NQV6 1147 aa10.34□□□□□ -0.75
PDLIM5-221ENST00000542407 LTKP29376 864 aa10.33□□□□□ -0.76
PDLIM5-221ENST00000542407 POGKQ9P215 609 aa10.33□□□□□ -0.76
PDLIM5-221ENST00000542407 ADAMTS8Q9UP79 889 aa10.33□□□□□ -0.76
PDLIM5-221ENST00000542407 NSD2O96028 1365 aa10.33□□□□□ -0.76
PDLIM5-221ENST00000542407 WAPLQ7Z5K2 1190 aa10.33□□□□□ -0.76
PDLIM5-221ENST00000542407 RNF216Q9NWF9 866 aaPredicted RBP10.33□□□□□ -0.76
PDLIM5-221ENST00000542407 POLR3AO14802 1390 aaPredicted RBP10.33□□□□□ -0.76
PDLIM5-221ENST00000542407 ADAMTSL3P82987 1691 aa10.33□□□□□ -0.76
PDLIM5-221ENST00000542407 ADGRB2O60241 1585 aa10.32□□□□□ -0.76
PDLIM5-221ENST00000542407 FRAT1Q92837 279 aaPredicted RBP10.32□□□□□ -0.76
PDLIM5-221ENST00000542407 SIRT1Q96EB6 747 aa10.32□□□□□ -0.76
PDLIM5-221ENST00000542407 RNF123Q5XPI4 1314 aa10.32□□□□□ -0.76
PDLIM5-221ENST00000542407 RIMS1Q86UR5 1692 aaKnown RBP10.32□□□□□ -0.76
PDLIM5-221ENST00000542407 CDK19Q9BWU1 502 aa10.32□□□□□ -0.76
PDLIM5-221ENST00000542407 VASPP50552 380 aaPredicted RBP10.32□□□□□ -0.76
PDLIM5-221ENST00000542407 HDGFP51858 240 aaKnown RBP10.32□□□□□ -0.76
PDLIM5-221ENST00000542407 SRPK2P78362 688 aaKnown RBP10.32□□□□□ -0.76
PDLIM5-221ENST00000542407 CGNL1Q0VF96 1302 aa10.31□□□□□ -0.76
PDLIM5-221ENST00000542407 ATP7BP35670 1465 aa10.31□□□□□ -0.76
PDLIM5-221ENST00000542407 PTPRUQ92729 1446 aa10.31□□□□□ -0.76
PDLIM5-221ENST00000542407 KCNG1Q9UIX4 513 aa10.31□□□□□ -0.76
PDLIM5-221ENST00000542407 KIF20BQ96Q89 1820 aa10.31□□□□□ -0.76
PDLIM5-221ENST00000542407 ROBO2Q9HCK4 1378 aa10.3□□□□□ -0.76
PDLIM5-221ENST00000542407 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.3□□□□□ -0.76
PDLIM5-221ENST00000542407 CEP170BQ9Y4F5 1589 aaPredicted RBP10.3□□□□□ -0.76
PDLIM5-221ENST00000542407 PDE4AP27815 886 aa10.3□□□□□ -0.76
PDLIM5-221ENST00000542407 ZNF142P52746 1687 aaPredicted RBP10.3□□□□□ -0.76
PDLIM5-221ENST00000542407 DIP2AQ14689 1571 aa10.3□□□□□ -0.76
PDLIM5-221ENST00000542407 SLC4A3P48751 1232 aa10.3□□□□□ -0.76
PDLIM5-221ENST00000542407 RGS3P49796 1198 aa10.29□□□□□ -0.76
PDLIM5-221ENST00000542407 MORC1Q86VD1 984 aa10.29□□□□□ -0.76
PDLIM5-221ENST00000542407 ZNF521Q96K83 1311 aa10.29□□□□□ -0.76
PDLIM5-221ENST00000542407 TOPAZ1Q8N9V7 1692 aa10.29□□□□□ -0.76
PDLIM5-221ENST00000542407 CALD1Q05682 793 aaKnown RBP10.29□□□□□ -0.76
PDLIM5-221ENST00000542407 PDE3BQ13370 1112 aa10.29□□□□□ -0.76
PDLIM5-221ENST00000542407 NFKBIBQ15653 356 aa10.29□□□□□ -0.76
PDLIM5-221ENST00000542407 TXNDC2Q86VQ3 553 aa10.29□□□□□ -0.76
PDLIM5-221ENST00000542407 CPSF1Q10570 1443 aaKnown RBP10.28□□□□□ -0.76
PDLIM5-221ENST00000542407 CDC42BPGQ6DT37 1551 aa10.28□□□□□ -0.76
PDLIM5-221ENST00000542407 XRN1Q8IZH2 1706 aaKnown RBP10.28□□□□□ -0.76
PDLIM5-221ENST00000542407 WDR43Q15061 677 aaKnown RBP eCLIP10.28□□□□□ -0.76
PDLIM5-221ENST00000542407 WWC1Q8IX03 1113 aa10.28□□□□□ -0.76
PDLIM5-221ENST00000542407 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.28□□□□□ -0.76
PDLIM5-221ENST00000542407 MON2Q7Z3U7 1717 aa10.28□□□□□ -0.76
PDLIM5-221ENST00000542407 ATXN8OSP0DMR3 200 aa10.28□□□□□ -0.76
PDLIM5-221ENST00000542407 COL3A1P02461 1466 aaPredicted RBP10.28□□□□□ -0.76
PDLIM5-221ENST00000542407 WASLO00401 505 aaPredicted RBP10.27□□□□□ -0.76
PDLIM5-221ENST00000542407 TICAM2Q86XR7 235 aa10.27□□□□□ -0.76
PDLIM5-221ENST00000542407 AKAP12Q02952 1782 aa10.27□□□□□ -0.77
PDLIM5-221ENST00000542407 TERF2IPQ9NYB0 399 aa10.27□□□□□ -0.77
PDLIM5-221ENST00000542407 CABP1Q9NZU7 370 aa10.27□□□□□ -0.77
PDLIM5-221ENST00000542407 IQSEC2Q5JU85 1478 aa10.27□□□□□ -0.77
PDLIM5-221ENST00000542407 PTCH1Q13635 1447 aa10.27□□□□□ -0.77
PDLIM5-221ENST00000542407 FYB1O15117 783 aa10.26□□□□□ -0.77
PDLIM5-221ENST00000542407 CDCA7LQ96GN5 454 aa10.26□□□□□ -0.77
PDLIM5-221ENST00000542407 PPIP5K1Q6PFW1 1433 aa10.26□□□□□ -0.77
PDLIM5-221ENST00000542407 NRKQ7Z2Y5 1582 aa10.26□□□□□ -0.77
PDLIM5-221ENST00000542407 TCERG1O14776 1098 aaKnown RBP10.25□□□□□ -0.77
PDLIM5-221ENST00000542407 TNNT2P45379 298 aaPredicted RBP10.25□□□□□ -0.77
PDLIM5-221ENST00000542407 PRR36Q9H6K5 1346 aa10.24□□□□□ -0.77
PDLIM5-221ENST00000542407 THEMISQ8N1K5 641 aaPredicted RBP10.24□□□□□ -0.77
PDLIM5-221ENST00000542407 PLCD3Q8N3E9 789 aa10.24□□□□□ -0.77
PDLIM5-221ENST00000542407 TBX22Q9Y458 520 aa10.24□□□□□ -0.77
PDLIM5-221ENST00000542407 EID1Q9Y6B2 187 aa10.24□□□□□ -0.77
PDLIM5-221ENST00000542407 ITSN1Q15811 1721 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms