RNA–Protein interactions for RNA: ENST00000541667.5

CLSTN3-211, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 671 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-211ENST00000541667 NWD2Q9ULI1 1742 aa17.08■□□□□ 0.32
CLSTN3-211ENST00000541667 PAK3O75914 559 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-211ENST00000541667 SEPT12Q8IYM1 358 aa17.08■□□□□ 0.32
CLSTN3-211ENST00000541667 CRYBG1Q9Y4K1 1723 aa17.07■□□□□ 0.32
CLSTN3-211ENST00000541667 PLCH1Q4KWH8 1693 aa17.07■□□□□ 0.32
CLSTN3-211ENST00000541667 CENPJQ9HC77 1338 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-211ENST00000541667 BTG4Q9NY30 223 aa17.07■□□□□ 0.32
CLSTN3-211ENST00000541667 CABP2Q9NPB3 220 aa17.06■□□□□ 0.32
CLSTN3-211ENST00000541667 TOPAZ1Q8N9V7 1692 aa17.05■□□□□ 0.32
CLSTN3-211ENST00000541667 NEUROD1Q13562 356 aa17.05■□□□□ 0.32
CLSTN3-211ENST00000541667 CCDC125Q86Z20 511 aa17.05■□□□□ 0.32
CLSTN3-211ENST00000541667 BRWD3Q6RI45 1802 aa17.05■□□□□ 0.32
CLSTN3-211ENST00000541667 ITSN1Q15811 1721 aa17.04■□□□□ 0.32
CLSTN3-211ENST00000541667 NRAPQ86VF7 1730 aa17.04■□□□□ 0.32
CLSTN3-211ENST00000541667 NUTM2GQ5VZR2 741 aa17.03■□□□□ 0.32
CLSTN3-211ENST00000541667 CCDC9Q9Y3X0 531 aaKnown RBP17.02■□□□□ 0.32
CLSTN3-211ENST00000541667 COL14A1Q05707 1796 aaKnown RBP17.02■□□□□ 0.31
CLSTN3-211ENST00000541667 KIAA0232Q92628 1395 aa17.02■□□□□ 0.31
CLSTN3-211ENST00000541667 SPATA31A5Q5VU36 1347 aa17.01■□□□□ 0.31
CLSTN3-211ENST00000541667 SPATA31A7Q8IWB4 1347 aa17.01■□□□□ 0.31
CLSTN3-211ENST00000541667 SRPK2P78362 688 aaKnown RBP17.01■□□□□ 0.31
CLSTN3-211ENST00000541667 CABP1Q9NZU7 370 aa17.01■□□□□ 0.31
CLSTN3-211ENST00000541667 TRPM1Q7Z4N2 1603 aa17■□□□□ 0.31
CLSTN3-211ENST00000541667 CHRNA2Q15822 529 aa17■□□□□ 0.31
CLSTN3-211ENST00000541667 FAM98CQ17RN3 349 aaKnown RBP17■□□□□ 0.31
CLSTN3-211ENST00000541667 PPIP5K1Q6PFW1 1433 aa17■□□□□ 0.31
CLSTN3-211ENST00000541667 PRDM11Q9NQV5 511 aa17■□□□□ 0.31
CLSTN3-211ENST00000541667 ZC3H6P61129 1189 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-211ENST00000541667 KRT27Q7Z3Y8 459 aa16.99■□□□□ 0.31
CLSTN3-211ENST00000541667 ABTB2Q8N961 1025 aa16.99■□□□□ 0.31
CLSTN3-211ENST00000541667 USP19O94966 1318 aa16.98■□□□□ 0.31
CLSTN3-211ENST00000541667 BLMP54132 1417 aaPredicted RBP16.97■□□□□ 0.31
CLSTN3-211ENST00000541667 SSH2Q76I76 1423 aa16.97■□□□□ 0.31
CLSTN3-211ENST00000541667 QRICH2Q9H0J4 1663 aa16.97■□□□□ 0.31
CLSTN3-211ENST00000541667 PHRF1Q9P1Y6 1649 aaKnown RBP16.96■□□□□ 0.31
CLSTN3-211ENST00000541667 SRCAPQ6ZRS2 3230 aa16.96■□□□□ 0.31
CLSTN3-211ENST00000541667 DEFB132Q7Z7B7 95 aa16.96■□□□□ 0.31
CLSTN3-211ENST00000541667 SPATA31A1Q5TZJ5 1347 aa16.96■□□□□ 0.3
CLSTN3-211ENST00000541667 ROCK2O75116 1388 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-211ENST00000541667 GCP02774 474 aa16.95■□□□□ 0.3
CLSTN3-211ENST00000541667 BRD4O60885 1362 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-211ENST00000541667 CPDO75976 1380 aa16.94■□□□□ 0.3
CLSTN3-211ENST00000541667 NLRP13Q86W25 1043 aa16.94■□□□□ 0.3
CLSTN3-211ENST00000541667 USP6P35125 1406 aa16.94■□□□□ 0.3
CLSTN3-211ENST00000541667 CAMTA1Q9Y6Y1 1673 aa16.94■□□□□ 0.3
CLSTN3-211ENST00000541667 EVC2Q86UK5 1308 aa16.94■□□□□ 0.3
CLSTN3-211ENST00000541667 FAM182BQ5T319 152 aa16.93■□□□□ 0.3
CLSTN3-211ENST00000541667 STRN4Q9NRL3 753 aa16.92■□□□□ 0.3
CLSTN3-211ENST00000541667 NRKQ7Z2Y5 1582 aa16.92■□□□□ 0.3
CLSTN3-211ENST00000541667 THSD7AQ9UPZ6 1657 aa16.91■□□□□ 0.3
CLSTN3-211ENST00000541667 LARP1Q6PKG0 1096 aaKnown RBP16.91■□□□□ 0.3
CLSTN3-211ENST00000541667 ZRANB1Q9UGI0 708 aa16.91■□□□□ 0.3
CLSTN3-211ENST00000541667 NLRP6P59044 892 aa16.9■□□□□ 0.3
CLSTN3-211ENST00000541667 LMO7Q8WWI1 1683 aa16.9■□□□□ 0.3
CLSTN3-211ENST00000541667 BARGINQ6ZT62 677 aa16.89■□□□□ 0.29
CLSTN3-211ENST00000541667 ZNF692Q9BU19 519 aaPredicted RBP16.89■□□□□ 0.29
CLSTN3-211ENST00000541667 CPSF1Q10570 1443 aaKnown RBP16.88■□□□□ 0.29
CLSTN3-211ENST00000541667 A0A0G2JS52 829 aa16.88■□□□□ 0.29
CLSTN3-211ENST00000541667 EVA1CP58658 441 aa16.88■□□□□ 0.29
CLSTN3-211ENST00000541667 MYT1Q01538 1121 aa16.88■□□□□ 0.29
CLSTN3-211ENST00000541667 TTC21BQ7Z4L5 1316 aa16.88■□□□□ 0.29
CLSTN3-211ENST00000541667 TRIM26Q12899 539 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-211ENST00000541667 CARD11Q9BXL7 1154 aa16.87■□□□□ 0.29
CLSTN3-211ENST00000541667 SBNO2Q9Y2G9 1366 aa16.87■□□□□ 0.29
CLSTN3-211ENST00000541667 SLIT3O75094 1523 aa16.86■□□□□ 0.29
CLSTN3-211ENST00000541667 USP35Q9P2H5 1018 aa16.86■□□□□ 0.29
CLSTN3-211ENST00000541667 AXIN2Q9Y2T1 843 aa16.86■□□□□ 0.29
CLSTN3-211ENST00000541667 PIK3C2AO00443 1686 aa16.85■□□□□ 0.29
CLSTN3-211ENST00000541667 SF3B2Q13435 895 aaKnown RBP16.85■□□□□ 0.29
CLSTN3-211ENST00000541667 AATKQ6ZMQ8 1374 aa16.85■□□□□ 0.29
CLSTN3-211ENST00000541667 ARHGEF25Q86VW2 580 aa16.84■□□□□ 0.29
CLSTN3-211ENST00000541667 TCP11L2Q8N4U5 519 aa16.84■□□□□ 0.29
CLSTN3-211ENST00000541667 COL5A2P05997 1499 aaPredicted RBP16.84■□□□□ 0.29
CLSTN3-211ENST00000541667 COL18A1P39060 1754 aa16.84■□□□□ 0.29
CLSTN3-211ENST00000541667 AKAP12Q02952 1782 aa16.83■□□□□ 0.28
CLSTN3-211ENST00000541667 EN1Q05925 392 aaPredicted RBP16.83■□□□□ 0.28
CLSTN3-211ENST00000541667 CD163L1Q9NR16 1453 aa16.83■□□□□ 0.28
CLSTN3-211ENST00000541667 TONSLQ96HA7 1378 aa16.82■□□□□ 0.28
CLSTN3-211ENST00000541667 THRAP3Q9Y2W1 955 aaKnown RBP16.82■□□□□ 0.28
CLSTN3-211ENST00000541667 TTC21AQ8NDW8 1320 aa16.81■□□□□ 0.28
CLSTN3-211ENST00000541667 BAG6P46379 1132 aa16.81■□□□□ 0.28
CLSTN3-211ENST00000541667 FAM196AQ6ZSG2 479 aa16.81■□□□□ 0.28
CLSTN3-211ENST00000541667 TESK2Q96S53 571 aa16.81■□□□□ 0.28
CLSTN3-211ENST00000541667 SLC12A5Q9H2X9 1139 aa16.81■□□□□ 0.28
CLSTN3-211ENST00000541667 KTN1Q86UP2 1357 aaKnown RBP16.8■□□□□ 0.28
CLSTN3-211ENST00000541667 TRIM37O94972 964 aa16.8■□□□□ 0.28
CLSTN3-211ENST00000541667 DISP2A7MBM2 1401 aa16.79■□□□□ 0.28
CLSTN3-211ENST00000541667 PUS7Q96PZ0 661 aaKnown RBP16.79■□□□□ 0.28
CLSTN3-211ENST00000541667 CAMKK2Q96RR4 588 aa16.79■□□□□ 0.28
CLSTN3-211ENST00000541667 CRB1P82279 1406 aa16.79■□□□□ 0.28
CLSTN3-211ENST00000541667 USP31Q70CQ4 1352 aa16.78■□□□□ 0.28
CLSTN3-211ENST00000541667 EZH2Q15910 746 aaKnown RBP16.78■□□□□ 0.28
CLSTN3-211ENST00000541667 KCNH5Q8NCM2 988 aa16.78■□□□□ 0.28
CLSTN3-211ENST00000541667 TNS1Q9HBL0 1735 aaKnown RBP16.77■□□□□ 0.28
CLSTN3-211ENST00000541667 ZBTB7CA1YPR0 619 aa16.77■□□□□ 0.28
CLSTN3-211ENST00000541667 PDE3BQ13370 1112 aa16.77■□□□□ 0.28
CLSTN3-211ENST00000541667 RGPD1P0DJD0 1748 aa16.76■□□□□ 0.27
CLSTN3-211ENST00000541667 NFAT5O94916 1531 aa16.76■□□□□ 0.27
CLSTN3-211ENST00000541667 WDR17Q8IZU2 1322 aa16.76■□□□□ 0.27
CLSTN3-211ENST00000541667 ST20-MTHFSA0A0A6YYL1 179 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 100.8 ms