RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 ALS2Q96Q42 1657 aa18■□□□□ 0.47
SNHG1-216ENST00000541416 WASLO00401 505 aaPredicted RBP18■□□□□ 0.47
SNHG1-216ENST00000541416 PRDM11Q9NQV5 511 aa18■□□□□ 0.47
SNHG1-216ENST00000541416 ADGRB1O14514 1584 aa18■□□□□ 0.47
SNHG1-216ENST00000541416 RGPD1P0DJD0 1748 aa17.99■□□□□ 0.47
SNHG1-216ENST00000541416 SPATA31A5Q5VU36 1347 aa17.98■□□□□ 0.47
SNHG1-216ENST00000541416 SPATA31A7Q8IWB4 1347 aa17.98■□□□□ 0.47
SNHG1-216ENST00000541416 PSDA5PKW4 1024 aaPredicted RBP17.97■□□□□ 0.47
SNHG1-216ENST00000541416 DCAF11Q8TEB1 546 aa17.97■□□□□ 0.47
SNHG1-216ENST00000541416 KDM2AQ9Y2K7 1162 aa17.97■□□□□ 0.47
SNHG1-216ENST00000541416 ITSN1Q15811 1721 aa17.96■□□□□ 0.47
SNHG1-216ENST00000541416 HRCP23327 699 aa17.96■□□□□ 0.47
SNHG1-216ENST00000541416 PRR36Q9H6K5 1346 aa17.96■□□□□ 0.46
SNHG1-216ENST00000541416 RAB3GAP2Q9H2M9 1393 aa17.95■□□□□ 0.46
SNHG1-216ENST00000541416 EN1Q05925 392 aaPredicted RBP17.95■□□□□ 0.46
SNHG1-216ENST00000541416 DISP2A7MBM2 1401 aa17.93■□□□□ 0.46
SNHG1-216ENST00000541416 FAM196AQ6ZSG2 479 aa17.93■□□□□ 0.46
SNHG1-216ENST00000541416 ATP7BP35670 1465 aa17.93■□□□□ 0.46
SNHG1-216ENST00000541416 THSD7AQ9UPZ6 1657 aa17.92■□□□□ 0.46
SNHG1-216ENST00000541416 CRYBG1Q9Y4K1 1723 aa17.92■□□□□ 0.46
SNHG1-216ENST00000541416 FAM182BQ5T319 152 aa17.91■□□□□ 0.46
SNHG1-216ENST00000541416 NUDT16Q96DE0 195 aaKnown RBP17.91■□□□□ 0.46
SNHG1-216ENST00000541416 STRN4Q9NRL3 753 aa17.91■□□□□ 0.46
SNHG1-216ENST00000541416 SPATA31A1Q5TZJ5 1347 aa17.91■□□□□ 0.46
SNHG1-216ENST00000541416 KIAA0232Q92628 1395 aa17.91■□□□□ 0.46
SNHG1-216ENST00000541416 EVA1CP58658 441 aa17.9■□□□□ 0.46
SNHG1-216ENST00000541416 R3HDM1Q15032 1099 aaKnown RBP17.9■□□□□ 0.46
SNHG1-216ENST00000541416 PARD3Q8TEW0 1356 aa17.9■□□□□ 0.46
SNHG1-216ENST00000541416 ARHGEF28Q8N1W1 1705 aaKnown RBP17.88■□□□□ 0.45
SNHG1-216ENST00000541416 TNS1Q9HBL0 1735 aaKnown RBP17.88■□□□□ 0.45
SNHG1-216ENST00000541416 TRIM37O94972 964 aa17.87■□□□□ 0.45
SNHG1-216ENST00000541416 PDE3BQ13370 1112 aa17.87■□□□□ 0.45
SNHG1-216ENST00000541416 CHRNA2Q15822 529 aa17.87■□□□□ 0.45
SNHG1-216ENST00000541416 CCDC61Q9Y6R9 512 aa17.87■□□□□ 0.45
SNHG1-216ENST00000541416 PHRF1Q9P1Y6 1649 aaKnown RBP17.87■□□□□ 0.45
SNHG1-216ENST00000541416 APBA3O96018 575 aa17.86■□□□□ 0.45
SNHG1-216ENST00000541416 ZC3H6P61129 1189 aaKnown RBP17.86■□□□□ 0.45
SNHG1-216ENST00000541416 EZH2Q15910 746 aaKnown RBP17.86■□□□□ 0.45
SNHG1-216ENST00000541416 CDK19Q9BWU1 502 aa17.86■□□□□ 0.45
SNHG1-216ENST00000541416 BARGINQ6ZT62 677 aa17.85■□□□□ 0.45
SNHG1-216ENST00000541416 USP35Q9P2H5 1018 aa17.85■□□□□ 0.45
SNHG1-216ENST00000541416 POLR3AO14802 1390 aaPredicted RBP17.84■□□□□ 0.45
SNHG1-216ENST00000541416 ACEP12821 1306 aa17.84■□□□□ 0.45
SNHG1-216ENST00000541416 C11orf95C9JLR9 678 aaPredicted RBP17.84■□□□□ 0.45
SNHG1-216ENST00000541416 NBPF8Q3BBV2 869 aa17.84■□□□□ 0.45
SNHG1-216ENST00000541416 ABTB2Q8N961 1025 aa17.84■□□□□ 0.45
SNHG1-216ENST00000541416 NBPF14Q5TI25 921 aa17.83■□□□□ 0.44
SNHG1-216ENST00000541416 NUTM2GQ5VZR2 741 aa17.83■□□□□ 0.44
SNHG1-216ENST00000541416 CAMKK2Q96RR4 588 aa17.83■□□□□ 0.44
SNHG1-216ENST00000541416 SSH2Q76I76 1423 aa17.82■□□□□ 0.44
SNHG1-216ENST00000541416 PLEKHG3A1L390 1219 aa17.82■□□□□ 0.44
SNHG1-216ENST00000541416 TCP11L2Q8N4U5 519 aa17.82■□□□□ 0.44
SNHG1-216ENST00000541416 THRAP3Q9Y2W1 955 aaKnown RBP17.82■□□□□ 0.44
SNHG1-216ENST00000541416 CPDO75976 1380 aa17.81■□□□□ 0.44
SNHG1-216ENST00000541416 NLRP13Q86W25 1043 aa17.81■□□□□ 0.44
SNHG1-216ENST00000541416 TOPAZ1Q8N9V7 1692 aa17.8■□□□□ 0.44
SNHG1-216ENST00000541416 KIAA1210Q9ULL0 1709 aa17.79■□□□□ 0.44
SNHG1-216ENST00000541416 NRKQ7Z2Y5 1582 aa17.79■□□□□ 0.44
SNHG1-216ENST00000541416 BRD4O60885 1362 aaPredicted RBP17.79■□□□□ 0.44
SNHG1-216ENST00000541416 SRPK2P78362 688 aaKnown RBP17.78■□□□□ 0.44
SNHG1-216ENST00000541416 LARP1Q6PKG0 1096 aaKnown RBP17.78■□□□□ 0.44
SNHG1-216ENST00000541416 USP19O94966 1318 aa17.77■□□□□ 0.44
SNHG1-216ENST00000541416 CAMTA1Q9Y6Y1 1673 aa17.77■□□□□ 0.43
SNHG1-216ENST00000541416 DCAF8L1A6NGE4 600 aa17.76■□□□□ 0.43
SNHG1-216ENST00000541416 GCP02774 474 aa17.76■□□□□ 0.43
SNHG1-216ENST00000541416 PPIP5K1Q6PFW1 1433 aa17.75■□□□□ 0.43
SNHG1-216ENST00000541416 RREB1Q92766 1687 aa17.75■□□□□ 0.43
SNHG1-216ENST00000541416 PPP1R1BQ9UD71 204 aaPredicted RBP17.75■□□□□ 0.43
SNHG1-216ENST00000541416 LMO7Q8WWI1 1683 aa17.74■□□□□ 0.43
SNHG1-216ENST00000541416 CENPJQ9HC77 1338 aaPredicted RBP17.73■□□□□ 0.43
SNHG1-216ENST00000541416 CRB1P82279 1406 aa17.72■□□□□ 0.43
SNHG1-216ENST00000541416 NUP188Q5SRE5 1749 aa17.72■□□□□ 0.43
SNHG1-216ENST00000541416 PARP4Q9UKK3 1724 aaKnown RBP17.72■□□□□ 0.43
SNHG1-216ENST00000541416 COL5A2P05997 1499 aaPredicted RBP17.72■□□□□ 0.43
SNHG1-216ENST00000541416 SPON1Q9HCB6 807 aa17.72■□□□□ 0.43
SNHG1-216ENST00000541416 OVOS2A0A0G2JMS6 1433 aa17.72■□□□□ 0.43
SNHG1-216ENST00000541416 OVOS2A0A0J9YW53 1432 aa17.72■□□□□ 0.43
SNHG1-216ENST00000541416 OVOS2Q6IE36 1432 aa17.72■□□□□ 0.43
SNHG1-216ENST00000541416 ZBTB7CA1YPR0 619 aa17.7■□□□□ 0.42
SNHG1-216ENST00000541416 NLRP6P59044 892 aa17.7■□□□□ 0.42
SNHG1-216ENST00000541416 AATKQ6ZMQ8 1374 aa17.69■□□□□ 0.42
SNHG1-216ENST00000541416 DDB1Q16531 1140 aa17.69■□□□□ 0.42
SNHG1-216ENST00000541416 CABP2Q9NPB3 220 aa17.69■□□□□ 0.42
SNHG1-216ENST00000541416 KCNQ2O43526 872 aa17.68■□□□□ 0.42
SNHG1-216ENST00000541416 YY1P25490 414 aa17.68■□□□□ 0.42
SNHG1-216ENST00000541416 NBPF1Q3BBV0 1214 aa17.68■□□□□ 0.42
SNHG1-216ENST00000541416 TOM1L2Q6ZVM7 507 aa17.68■□□□□ 0.42
SNHG1-216ENST00000541416 CDCA7Q9BWT1 371 aaPredicted RBP17.68■□□□□ 0.42
SNHG1-216ENST00000541416 USP6P35125 1406 aa17.67■□□□□ 0.42
SNHG1-216ENST00000541416 PLSCR1O15162 318 aa17.67■□□□□ 0.42
SNHG1-216ENST00000541416 CABP1Q9NZU7 370 aa17.67■□□□□ 0.42
SNHG1-216ENST00000541416 NINLQ9Y2I6 1382 aa17.66■□□□□ 0.42
SNHG1-216ENST00000541416 RGPD3A6NKT7 1758 aaPredicted RBP17.66■□□□□ 0.42
SNHG1-216ENST00000541416 RGPD4Q7Z3J3 1758 aa17.66■□□□□ 0.42
SNHG1-216ENST00000541416 QRICH2Q9H0J4 1663 aa17.66■□□□□ 0.42
SNHG1-216ENST00000541416 EVC2Q86UK5 1308 aa17.65■□□□□ 0.42
SNHG1-216ENST00000541416 SLIT3O75094 1523 aa17.64■□□□□ 0.41
SNHG1-216ENST00000541416 KCNH5Q8NCM2 988 aa17.64■□□□□ 0.41
SNHG1-216ENST00000541416 BCL11BQ9C0K0 894 aaPredicted RBP17.64■□□□□ 0.41
SNHG1-216ENST00000541416 ZNF692Q9BU19 519 aaPredicted RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms