RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 KIF7Q2M1P5 1343 aa11.79□□□□□ -0.52
CLIP1-214ENST00000540539 RALBP1Q15311 655 aa11.78□□□□□ -0.52
CLIP1-214ENST00000540539 ERBINQ96RT1 1412 aa11.78□□□□□ -0.52
CLIP1-214ENST00000540539 A2MP01023 1474 aa11.78□□□□□ -0.52
CLIP1-214ENST00000540539 MLECQ14165 292 aa11.77□□□□□ -0.53
CLIP1-214ENST00000540539 CCDC66A2RUB6 948 aa11.76□□□□□ -0.53
CLIP1-214ENST00000540539 GTF2F1P35269 517 aaKnown RBP eCLIP11.76□□□□□ -0.53
CLIP1-214ENST00000540539 ARHGEF40Q8TER5 1519 aa11.76□□□□□ -0.53
CLIP1-214ENST00000540539 MCM5P33992 734 aa11.76□□□□□ -0.53
CLIP1-214ENST00000540539 PDLIM2Q96JY6 352 aa11.76□□□□□ -0.53
CLIP1-214ENST00000540539 ATP10AO60312 1499 aa11.76□□□□□ -0.53
CLIP1-214ENST00000540539 PDE3BQ13370 1112 aa11.75□□□□□ -0.53
CLIP1-214ENST00000540539 CDCA7LQ96GN5 454 aa11.75□□□□□ -0.53
CLIP1-214ENST00000540539 TBC1D32Q96NH3 1257 aa11.75□□□□□ -0.53
CLIP1-214ENST00000540539 POLR1AO95602 1720 aaPredicted RBP11.75□□□□□ -0.53
CLIP1-214ENST00000540539 LOC102724159A0A0B4J2E5 919 aa11.75□□□□□ -0.53
CLIP1-214ENST00000540539 FAM177BA6PVY3 158 aa11.75□□□□□ -0.53
CLIP1-214ENST00000540539 U2AF2P26368 475 aaKnown RBP eCLIP11.75□□□□□ -0.532e-6■■■■□ 26.3
CLIP1-214ENST00000540539 PWP2Q15269 919 aaKnown RBP11.75□□□□□ -0.53
CLIP1-214ENST00000540539 GRIPAP1Q4V328 841 aa11.75□□□□□ -0.53
CLIP1-214ENST00000540539 PDCL2Q8N4E4 241 aa11.74□□□□□ -0.53
CLIP1-214ENST00000540539 ZNF692Q9BU19 519 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-214ENST00000540539 KIF3AQ9Y496 699 aa11.74□□□□□ -0.53
CLIP1-214ENST00000540539 EIF2AK4Q9P2K8 1649 aaKnown RBP11.74□□□□□ -0.53
CLIP1-214ENST00000540539 KIF3BO15066 747 aa11.74□□□□□ -0.53
CLIP1-214ENST00000540539 GABPB1Q06547 395 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-214ENST00000540539 CC2D1BQ5T0F9 858 aaKnown RBP11.74□□□□□ -0.53
CLIP1-214ENST00000540539 PTMAP06454 111 aaKnown RBP11.74□□□□□ -0.53
CLIP1-214ENST00000540539 SLFN14P0C7P3 912 aa11.74□□□□□ -0.53
CLIP1-214ENST00000540539 PTMSP20962 102 aa11.74□□□□□ -0.53
CLIP1-214ENST00000540539 EP400NLQ6ZTU2 488 aa11.74□□□□□ -0.53
CLIP1-214ENST00000540539 SKOR2Q2VWA4 1001 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-214ENST00000540539 PRIMPOLQ96LW4 560 aa11.73□□□□□ -0.53
CLIP1-214ENST00000540539 NINLQ9Y2I6 1382 aa11.72□□□□□ -0.53
CLIP1-214ENST00000540539 REREQ9P2R6 1566 aa11.72□□□□□ -0.53
CLIP1-214ENST00000540539 HMGN5P82970 282 aaKnown RBP11.72□□□□□ -0.53
CLIP1-214ENST00000540539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.72□□□□□ -0.532e-7■■□□□ 13.3
CLIP1-214ENST00000540539 CARD10Q9BWT7 1032 aa11.72□□□□□ -0.53
CLIP1-214ENST00000540539 TSPYL1Q9H0U9 437 aa11.72□□□□□ -0.53
CLIP1-214ENST00000540539 BCL2L12Q9HB09 334 aa11.72□□□□□ -0.53
CLIP1-214ENST00000540539 NUP155O75694 1391 aa11.72□□□□□ -0.53
CLIP1-214ENST00000540539 UNC13BO14795 1591 aa11.72□□□□□ -0.53
CLIP1-214ENST00000540539 IBTKQ9P2D0 1353 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-214ENST00000540539 BCORL1Q5H9F3 1711 aa11.71□□□□□ -0.53
CLIP1-214ENST00000540539 EFCC1Q9HA90 598 aa11.71□□□□□ -0.53
CLIP1-214ENST00000540539 DEPDC5O75140 1603 aa11.71□□□□□ -0.54
CLIP1-214ENST00000540539 RBM25P49756 843 aaKnown RBP11.71□□□□□ -0.54
CLIP1-214ENST00000540539 TNPO1Q92973 898 aaKnown RBP11.7□□□□□ -0.54
CLIP1-214ENST00000540539 SIRT1Q96EB6 747 aa11.7□□□□□ -0.54
CLIP1-214ENST00000540539 SIGLEC1Q9BZZ2 1709 aa11.7□□□□□ -0.54
CLIP1-214ENST00000540539 UPF2Q9HAU5 1272 aaKnown RBP11.7□□□□□ -0.54
CLIP1-214ENST00000540539 ZBTB7CA1YPR0 619 aa11.7□□□□□ -0.54
CLIP1-214ENST00000540539 FEZ1Q99689 392 aa11.7□□□□□ -0.54
CLIP1-214ENST00000540539 FEZ2Q9UHY8 353 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-214ENST00000540539 RNF17Q9BXT8 1623 aaKnown RBP11.69□□□□□ -0.54
CLIP1-214ENST00000540539 AGLP35573 1532 aa11.69□□□□□ -0.54
CLIP1-214ENST00000540539 GGT6Q6P531 493 aa11.69□□□□□ -0.54
CLIP1-214ENST00000540539 PZPP20742 1482 aa11.69□□□□□ -0.54
CLIP1-214ENST00000540539 KDM5DQ9BY66 1539 aa11.69□□□□□ -0.54
CLIP1-214ENST00000540539 MROH1Q8NDA8 1641 aa11.69□□□□□ -0.54
CLIP1-214ENST00000540539 HSP90AB1P08238 724 aaKnown RBP11.69□□□□□ -0.54
CLIP1-214ENST00000540539 MPHOSPH9Q99550 1183 aa11.69□□□□□ -0.54
CLIP1-214ENST00000540539 OGFRQ9NZT2 677 aa11.69□□□□□ -0.54
CLIP1-214ENST00000540539 CALCOCO1Q9P1Z2 691 aa11.69□□□□□ -0.54
CLIP1-214ENST00000540539 DDIT3P35638 169 aa11.68□□□□□ -0.54
CLIP1-214ENST00000540539 GBP4Q96PP9 640 aa11.68□□□□□ -0.54
CLIP1-214ENST00000540539 PRDM15P57071 1507 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-214ENST00000540539 FAM43BQ6ZT52 329 aaPredicted RBP11.68□□□□□ -0.54
CLIP1-214ENST00000540539 IQGAP3Q86VI3 1631 aa11.67□□□□□ -0.54
CLIP1-214ENST00000540539 FAM135AQ9P2D6 1515 aa11.67□□□□□ -0.54
CLIP1-214ENST00000540539 KANK1Q14678 1352 aa11.67□□□□□ -0.54
CLIP1-214ENST00000540539 KIAA2012Q0VF49 1180 aa11.67□□□□□ -0.54
CLIP1-214ENST00000540539 ANKRD7Q92527 254 aa11.67□□□□□ -0.54
CLIP1-214ENST00000540539 TRERF1Q96PN7 1200 aa11.67□□□□□ -0.54
CLIP1-214ENST00000540539 CCDC39Q9UFE4 941 aa11.67□□□□□ -0.54
CLIP1-214ENST00000540539 EGFL6Q8IUX8 553 aa11.67□□□□□ -0.54
CLIP1-214ENST00000540539 BANK1Q8NDB2 785 aa11.67□□□□□ -0.54
CLIP1-214ENST00000540539 NCOA3Q9Y6Q9 1424 aa11.66□□□□□ -0.54
CLIP1-214ENST00000540539 LMOD3Q0VAK6 560 aa11.66□□□□□ -0.54
CLIP1-214ENST00000540539 CT47A1Q5JQC4 288 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-214ENST00000540539 SPATA31E1Q6ZUB1 1445 aa11.66□□□□□ -0.54
CLIP1-214ENST00000540539 VWDEQ8N2E2 1590 aa11.66□□□□□ -0.54
CLIP1-214ENST00000540539 TERF2Q15554 542 aa11.66□□□□□ -0.54
CLIP1-214ENST00000540539 RBSNQ9H1K0 784 aa11.66□□□□□ -0.54
CLIP1-214ENST00000540539 MAPK8IP3Q9UPT6 1336 aa11.65□□□□□ -0.54
CLIP1-214ENST00000540539 POTEDQ86YR6 584 aa11.65□□□□□ -0.54
CLIP1-214ENST00000540539 ZNF445P59923 1031 aa11.65□□□□□ -0.55
CLIP1-214ENST00000540539 BRD4O60885 1362 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-214ENST00000540539 ERICH4A6NGS2 130 aa11.64□□□□□ -0.55
CLIP1-214ENST00000540539 PHF14O94880 888 aa11.64□□□□□ -0.55
CLIP1-214ENST00000540539 PKD2Q13563 968 aa11.64□□□□□ -0.55
CLIP1-214ENST00000540539 CEP152O94986 1710 aa11.64□□□□□ -0.55
CLIP1-214ENST00000540539 TNNT3P45378 269 aaPredicted RBP11.64□□□□□ -0.55
CLIP1-214ENST00000540539 KDM2AQ9Y2K7 1162 aa11.64□□□□□ -0.55
CLIP1-214ENST00000540539 ROCK2O75116 1388 aaKnown RBP11.63□□□□□ -0.55
CLIP1-214ENST00000540539 NOP2P46087 812 aaKnown RBP11.63□□□□□ -0.55
CLIP1-214ENST00000540539 RAB3GAP1Q15042 981 aa11.63□□□□□ -0.55
CLIP1-214ENST00000540539 KLHL40Q2TBA0 621 aa11.63□□□□□ -0.55
CLIP1-214ENST00000540539 MYCBPQ99417 103 aaPredicted RBP11.63□□□□□ -0.55
CLIP1-214ENST00000540539 RSPH14Q9UHP6 348 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms