RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 EZH2Q15910 746 aaKnown RBP17.26■□□□□ 0.35
CLSTN3-209ENST00000539982 HIRIP3Q9BW71 556 aaPredicted RBP17.26■□□□□ 0.35
CLSTN3-209ENST00000539982 CAMKK2Q96RR4 588 aa17.25■□□□□ 0.35
CLSTN3-209ENST00000539982 PRDM11Q9NQV5 511 aa17.25■□□□□ 0.35
CLSTN3-209ENST00000539982 ALS2Q96Q42 1657 aa17.25■□□□□ 0.35
CLSTN3-209ENST00000539982 PRR36Q9H6K5 1346 aa17.24■□□□□ 0.35
CLSTN3-209ENST00000539982 ADGRB2O60241 1585 aa17.24■□□□□ 0.35
CLSTN3-209ENST00000539982 FAM196AQ6ZSG2 479 aa17.24■□□□□ 0.35
CLSTN3-209ENST00000539982 TRAK1Q9UPV9 953 aa17.24■□□□□ 0.35
CLSTN3-209ENST00000539982 EIF3AQ14152 1382 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-209ENST00000539982 SPATA31A1Q5TZJ5 1347 aa17.23■□□□□ 0.35
CLSTN3-209ENST00000539982 MINK1Q8N4C8 1332 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-209ENST00000539982 WASLO00401 505 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-209ENST00000539982 PAK3O75914 559 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-209ENST00000539982 TRIM37O94972 964 aa17.23■□□□□ 0.35
CLSTN3-209ENST00000539982 NGDNQ8NEJ9 315 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-209ENST00000539982 THSD7AQ9UPZ6 1657 aa17.23■□□□□ 0.35
CLSTN3-209ENST00000539982 APBA3O96018 575 aa17.21■□□□□ 0.35
CLSTN3-209ENST00000539982 TNS1Q9HBL0 1735 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-209ENST00000539982 TULP4Q9NRJ4 1543 aa17.2■□□□□ 0.34
CLSTN3-209ENST00000539982 ADGRB1O14514 1584 aa17.19■□□□□ 0.34
CLSTN3-209ENST00000539982 PARD3Q8TEW0 1356 aa17.19■□□□□ 0.34
CLSTN3-209ENST00000539982 KIAA0232Q92628 1395 aa17.18■□□□□ 0.34
CLSTN3-209ENST00000539982 CHRNA2Q15822 529 aa17.18■□□□□ 0.34
CLSTN3-209ENST00000539982 STRN4Q9NRL3 753 aa17.18■□□□□ 0.34
CLSTN3-209ENST00000539982 CRYBG1Q9Y4K1 1723 aa17.18■□□□□ 0.34
CLSTN3-209ENST00000539982 EVA1CP58658 441 aa17.16■□□□□ 0.34
CLSTN3-209ENST00000539982 ZC3H6P61129 1189 aaKnown RBP17.16■□□□□ 0.34
CLSTN3-209ENST00000539982 PDE3BQ13370 1112 aa17.16■□□□□ 0.34
CLSTN3-209ENST00000539982 NBPF8Q3BBV2 869 aa17.16■□□□□ 0.34
CLSTN3-209ENST00000539982 NBPF14Q5TI25 921 aa17.16■□□□□ 0.34
CLSTN3-209ENST00000539982 BARGINQ6ZT62 677 aa17.16■□□□□ 0.34
CLSTN3-209ENST00000539982 NUDT16Q96DE0 195 aaKnown RBP17.15■□□□□ 0.34
CLSTN3-209ENST00000539982 USP35Q9P2H5 1018 aa17.15■□□□□ 0.34
CLSTN3-209ENST00000539982 KDM2AQ9Y2K7 1162 aa17.15■□□□□ 0.34
CLSTN3-209ENST00000539982 YY1P25490 414 aa17.14■□□□□ 0.33
CLSTN3-209ENST00000539982 DCAF11Q8TEB1 546 aa17.13■□□□□ 0.33
CLSTN3-209ENST00000539982 STAC3Q96MF2 364 aa17.13■□□□□ 0.33
CLSTN3-209ENST00000539982 NUTM2GQ5VZR2 741 aa17.12■□□□□ 0.33
CLSTN3-209ENST00000539982 TCP11L2Q8N4U5 519 aa17.11■□□□□ 0.33
CLSTN3-209ENST00000539982 ATP7BP35670 1465 aa17.11■□□□□ 0.33
CLSTN3-209ENST00000539982 LARP1Q6PKG0 1096 aaKnown RBP17.1■□□□□ 0.33
CLSTN3-209ENST00000539982 SSH2Q76I76 1423 aa17.1■□□□□ 0.33
CLSTN3-209ENST00000539982 CDK19Q9BWU1 502 aa17.09■□□□□ 0.33
CLSTN3-209ENST00000539982 SPON1Q9HCB6 807 aa17.09■□□□□ 0.33
CLSTN3-209ENST00000539982 THRAP3Q9Y2W1 955 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-209ENST00000539982 PHRF1Q9P1Y6 1649 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-209ENST00000539982 ITSN1Q15811 1721 aa17.08■□□□□ 0.32
CLSTN3-209ENST00000539982 RREB1Q92766 1687 aa17.08■□□□□ 0.32
CLSTN3-209ENST00000539982 POLR3AO14802 1390 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-209ENST00000539982 ACEP12821 1306 aa17.08■□□□□ 0.32
CLSTN3-209ENST00000539982 KCNQ2O43526 872 aa17.08■□□□□ 0.32
CLSTN3-209ENST00000539982 PPP1R1BQ9UD71 204 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-209ENST00000539982 CCDC61Q9Y6R9 512 aa17.08■□□□□ 0.32
CLSTN3-209ENST00000539982 CAMTA1Q9Y6Y1 1673 aa17.07■□□□□ 0.32
CLSTN3-209ENST00000539982 PLEKHG3A1L390 1219 aa17.07■□□□□ 0.32
CLSTN3-209ENST00000539982 DCAF8L1A6NGE4 600 aa17.07■□□□□ 0.32
CLSTN3-209ENST00000539982 C11orf95C9JLR9 678 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-209ENST00000539982 ABTB2Q8N961 1025 aa17.07■□□□□ 0.32
CLSTN3-209ENST00000539982 NUP188Q5SRE5 1749 aa17.07■□□□□ 0.32
CLSTN3-209ENST00000539982 CPDO75976 1380 aa17.06■□□□□ 0.32
CLSTN3-209ENST00000539982 GCP02774 474 aa17.03■□□□□ 0.32
CLSTN3-209ENST00000539982 NLRP13Q86W25 1043 aa17.03■□□□□ 0.32
CLSTN3-209ENST00000539982 ARHGEF28Q8N1W1 1705 aaKnown RBP17.03■□□□□ 0.32
CLSTN3-209ENST00000539982 RAB3GAP2Q9H2M9 1393 aa17.02■□□□□ 0.32
CLSTN3-209ENST00000539982 NINLQ9Y2I6 1382 aa17.02■□□□□ 0.32
CLSTN3-209ENST00000539982 USP19O94966 1318 aa17.02■□□□□ 0.32
CLSTN3-209ENST00000539982 PLSCR1O15162 318 aa17.02■□□□□ 0.32
CLSTN3-209ENST00000539982 NRKQ7Z2Y5 1582 aa17.02■□□□□ 0.31
CLSTN3-209ENST00000539982 LMO7Q8WWI1 1683 aa17.01■□□□□ 0.31
CLSTN3-209ENST00000539982 TOPAZ1Q8N9V7 1692 aa16.99■□□□□ 0.31
CLSTN3-209ENST00000539982 COL5A2P05997 1499 aaPredicted RBP16.99■□□□□ 0.31
CLSTN3-209ENST00000539982 PARP4Q9UKK3 1724 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-209ENST00000539982 OVOS2A0A0G2JMS6 1433 aa16.98■□□□□ 0.31
CLSTN3-209ENST00000539982 OVOS2A0A0J9YW53 1432 aa16.98■□□□□ 0.31
CLSTN3-209ENST00000539982 CRB1P82279 1406 aa16.98■□□□□ 0.31
CLSTN3-209ENST00000539982 OVOS2Q6IE36 1432 aa16.98■□□□□ 0.31
CLSTN3-209ENST00000539982 DDB1Q16531 1140 aa16.97■□□□□ 0.31
CLSTN3-209ENST00000539982 BCL11BQ9C0K0 894 aaPredicted RBP16.97■□□□□ 0.31
CLSTN3-209ENST00000539982 BRD4O60885 1362 aaPredicted RBP16.96■□□□□ 0.31
CLSTN3-209ENST00000539982 SRPK2P78362 688 aaKnown RBP16.95■□□□□ 0.3
CLSTN3-209ENST00000539982 ANO8Q9HCE9 1232 aaPredicted RBP16.95■□□□□ 0.3
CLSTN3-209ENST00000539982 PEAK1Q9H792 1746 aa16.95■□□□□ 0.3
CLSTN3-209ENST00000539982 AATKQ6ZMQ8 1374 aa16.94■□□□□ 0.3
CLSTN3-209ENST00000539982 ZBTB7CA1YPR0 619 aa16.94■□□□□ 0.3
CLSTN3-209ENST00000539982 NLRP6P59044 892 aa16.94■□□□□ 0.3
CLSTN3-209ENST00000539982 PTF1AQ7RTS3 328 aa16.94■□□□□ 0.3
CLSTN3-209ENST00000539982 PROM2Q8N271 834 aa16.94■□□□□ 0.3
CLSTN3-209ENST00000539982 RGPD3A6NKT7 1758 aaPredicted RBP16.94■□□□□ 0.3
CLSTN3-209ENST00000539982 RGPD4Q7Z3J3 1758 aa16.94■□□□□ 0.3
CLSTN3-209ENST00000539982 PPIP5K1Q6PFW1 1433 aa16.94■□□□□ 0.3
CLSTN3-209ENST00000539982 TOM1L2Q6ZVM7 507 aa16.93■□□□□ 0.3
CLSTN3-209ENST00000539982 PDGFDQ9GZP0 370 aaPredicted RBP16.93■□□□□ 0.3
CLSTN3-209ENST00000539982 SBF2Q86WG5 1849 aa16.92■□□□□ 0.3
CLSTN3-209ENST00000539982 CABP2Q9NPB3 220 aa16.92■□□□□ 0.3
CLSTN3-209ENST00000539982 ZBTB7AO95365 584 aa16.91■□□□□ 0.3
CLSTN3-209ENST00000539982 NBPF1Q3BBV0 1214 aa16.91■□□□□ 0.3
CLSTN3-209ENST00000539982 MARCH10Q8NA82 808 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-209ENST00000539982 CDCA7Q9BWT1 371 aaPredicted RBP16.91■□□□□ 0.3
CLSTN3-209ENST00000539982 CASZ1Q86V15 1759 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms