RNA–Protein interactions for RNA: ENST00000539847.1

CCDC60-204, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CCDC60, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-204ENST00000539847 KIF12Q96FN5 646 aa10.52□□□□□ -0.73
CCDC60-204ENST00000539847 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.51□□□□□ -0.73
CCDC60-204ENST00000539847 EFCAB3Q8N7B9 438 aa10.51□□□□□ -0.73
CCDC60-204ENST00000539847 AMOTL2Q9Y2J4 779 aa10.51□□□□□ -0.73
CCDC60-204ENST00000539847 IQGAP3Q86VI3 1631 aa10.51□□□□□ -0.73
CCDC60-204ENST00000539847 PAK3O75914 559 aaPredicted RBP10.5□□□□□ -0.73
CCDC60-204ENST00000539847 LRRC59Q96AG4 307 aaKnown RBP10.5□□□□□ -0.73
CCDC60-204ENST00000539847 SETBP1Q9Y6X0 1596 aa10.5□□□□□ -0.73
CCDC60-204ENST00000539847 PIP4P2Q8N4L2 257 aa10.49□□□□□ -0.73
CCDC60-204ENST00000539847 CABP2Q9NPB3 220 aa10.49□□□□□ -0.73
CCDC60-204ENST00000539847 MYO5BQ9ULV0 1848 aa10.49□□□□□ -0.73
CCDC60-204ENST00000539847 PTPRUQ92729 1446 aa10.49□□□□□ -0.73
CCDC60-204ENST00000539847 ASXL1Q8IXJ9 1541 aa10.48□□□□□ -0.73
CCDC60-204ENST00000539847 E9PCH4 1651 aa10.48□□□□□ -0.73
CCDC60-204ENST00000539847 FBXO22Q8NEZ5 403 aa10.48□□□□□ -0.73
CCDC60-204ENST00000539847 NUP155O75694 1391 aa10.48□□□□□ -0.73
CCDC60-204ENST00000539847 MST1RQ04912 1400 aa10.48□□□□□ -0.73
CCDC60-204ENST00000539847 CHRDL2Q6WN34 429 aa10.47□□□□□ -0.73
CCDC60-204ENST00000539847 PHF8Q9UPP1 1060 aa10.47□□□□□ -0.73
CCDC60-204ENST00000539847 ADGRL3Q9HAR2 1447 aa10.47□□□□□ -0.73
CCDC60-204ENST00000539847 SETD1AO15047 1707 aaKnown RBP10.47□□□□□ -0.73
CCDC60-204ENST00000539847 XRN1Q8IZH2 1706 aaKnown RBP10.47□□□□□ -0.73
CCDC60-204ENST00000539847 AFF2P51816 1311 aa10.46□□□□□ -0.73
CCDC60-204ENST00000539847 PRAG1Q86YV5 1406 aa10.46□□□□□ -0.74
CCDC60-204ENST00000539847 BRPF1P55201 1214 aaPredicted RBP10.45□□□□□ -0.74
CCDC60-204ENST00000539847 NLRP6P59044 892 aa10.45□□□□□ -0.74
CCDC60-204ENST00000539847 RBM6P78332 1123 aaKnown RBP10.45□□□□□ -0.74
CCDC60-204ENST00000539847 TRIM52Q96A61 297 aa10.45□□□□□ -0.74
CCDC60-204ENST00000539847 NHSL1Q5SYE7 1610 aa10.44□□□□□ -0.74
CCDC60-204ENST00000539847 NRXN3Q9Y4C0 1643 aa10.44□□□□□ -0.74
CCDC60-204ENST00000539847 PTCH1Q13635 1447 aa10.44□□□□□ -0.74
CCDC60-204ENST00000539847 PNPLA6Q8IY17 1366 aa10.44□□□□□ -0.74
CCDC60-204ENST00000539847 NUTM2DQ5VT03 806 aaPredicted RBP10.44□□□□□ -0.74
CCDC60-204ENST00000539847 PPP4R2Q9NY27 417 aa10.44□□□□□ -0.74
CCDC60-204ENST00000539847 METP08581 1390 aa10.43□□□□□ -0.74
CCDC60-204ENST00000539847 SOX12O15370 315 aa10.43□□□□□ -0.74
CCDC60-204ENST00000539847 SIN3AQ96ST3 1273 aa10.43□□□□□ -0.74
CCDC60-204ENST00000539847 ZRANB1Q9UGI0 708 aa10.43□□□□□ -0.74
CCDC60-204ENST00000539847 NUTM2BA6NNL0 878 aaPredicted RBP10.42□□□□□ -0.74
CCDC60-204ENST00000539847 NUTM2EB1AL46 878 aaPredicted RBP10.42□□□□□ -0.74
CCDC60-204ENST00000539847 NUTM2AQ8IVF1 878 aaPredicted RBP10.42□□□□□ -0.74
CCDC60-204ENST00000539847 NGLY1Q96IV0 654 aa10.42□□□□□ -0.74
CCDC60-204ENST00000539847 PHF12Q96QT6 1004 aa10.42□□□□□ -0.74
CCDC60-204ENST00000539847 QTRT2Q9H974 415 aaKnown RBP10.42□□□□□ -0.74
CCDC60-204ENST00000539847 LAMC1P11047 1609 aa10.42□□□□□ -0.74
CCDC60-204ENST00000539847 SOS2Q07890 1332 aaPredicted RBP10.41□□□□□ -0.74
CCDC60-204ENST00000539847 ZNF326Q5BKZ1 582 aaKnown RBP10.41□□□□□ -0.74
CCDC60-204ENST00000539847 C1orf167Q5SNV9 1468 aa10.41□□□□□ -0.74
CCDC60-204ENST00000539847 RGS12O14924 1447 aa10.41□□□□□ -0.74
CCDC60-204ENST00000539847 RPGRIP1LQ68CZ1 1315 aa10.4□□□□□ -0.74
CCDC60-204ENST00000539847 SRCAPQ6ZRS2 3230 aa10.4□□□□□ -0.74
CCDC60-204ENST00000539847 ATAD2Q6PL18 1390 aa10.39□□□□□ -0.75
CCDC60-204ENST00000539847 TONSLQ96HA7 1378 aa10.39□□□□□ -0.75
CCDC60-204ENST00000539847 NEXMIFQ5QGS0 1516 aa10.39□□□□□ -0.75
CCDC60-204ENST00000539847 SPHKAPQ2M3C7 1700 aa10.39□□□□□ -0.75
CCDC60-204ENST00000539847 CD44P16070 742 aaKnown RBP10.39□□□□□ -0.75
CCDC60-204ENST00000539847 ITGAEP38570 1179 aa10.39□□□□□ -0.75
CCDC60-204ENST00000539847 FNBP4Q8N3X1 1017 aaPredicted RBP10.39□□□□□ -0.75
CCDC60-204ENST00000539847 C8orf37Q96NL8 207 aa10.39□□□□□ -0.75
CCDC60-204ENST00000539847 HFM1A2PYH4 1435 aa10.39□□□□□ -0.75
CCDC60-204ENST00000539847 CCDC125Q86Z20 511 aa10.38□□□□□ -0.75
CCDC60-204ENST00000539847 TRPC5Q9UL62 973 aaPredicted RBP10.38□□□□□ -0.75
CCDC60-204ENST00000539847 ZC3H15Q8WU90 426 aaKnown RBP10.36□□□□□ -0.75
CCDC60-204ENST00000539847 MS4A4AQ96JQ5 239 aa10.36□□□□□ -0.75
CCDC60-204ENST00000539847 ROBO2Q9HCK4 1378 aa10.36□□□□□ -0.75
CCDC60-204ENST00000539847 NALCNQ8IZF0 1738 aa10.36□□□□□ -0.75
CCDC60-204ENST00000539847 NPHP3Q7Z494 1330 aa10.35□□□□□ -0.75
CCDC60-204ENST00000539847 ATRNO75882 1429 aa10.35□□□□□ -0.75
CCDC60-204ENST00000539847 E2F4Q16254 413 aa10.35□□□□□ -0.75
CCDC60-204ENST00000539847 ARHGEF1Q92888 912 aaKnown RBP10.35□□□□□ -0.75
CCDC60-204ENST00000539847 USP21Q9UK80 565 aa10.35□□□□□ -0.75
CCDC60-204ENST00000539847 CLTCL1P53675 1640 aa10.34□□□□□ -0.75
CCDC60-204ENST00000539847 NEUROD2Q15784 382 aa10.34□□□□□ -0.75
CCDC60-204ENST00000539847 TRPC6Q9Y210 931 aa10.34□□□□□ -0.75
CCDC60-204ENST00000539847 MYOM2P54296 1465 aa10.34□□□□□ -0.75
CCDC60-204ENST00000539847 COL22A1Q8NFW1 1626 aaPredicted RBP10.33□□□□□ -0.76
CCDC60-204ENST00000539847 ADAMTS2O95450 1211 aa10.33□□□□□ -0.76
CCDC60-204ENST00000539847 DDX17Q92841 729 aaKnown RBP10.33□□□□□ -0.76
CCDC60-204ENST00000539847 LRPPRCP42704 1394 aaKnown RBP10.33□□□□□ -0.76
CCDC60-204ENST00000539847 NAIPQ13075 1403 aa10.33□□□□□ -0.76
CCDC60-204ENST00000539847 CDC42BPGQ6DT37 1551 aa10.32□□□□□ -0.76
CCDC60-204ENST00000539847 HNRNPUQ00839 825 aaKnown RBP eCLIP10.32□□□□□ -0.76
CCDC60-204ENST00000539847 ORAI2Q96SN7 254 aa10.32□□□□□ -0.76
CCDC60-204ENST00000539847 TMEM106CQ9BVX2 250 aa10.32□□□□□ -0.76
CCDC60-204ENST00000539847 TECPR2O15040 1411 aa10.32□□□□□ -0.76
CCDC60-204ENST00000539847 ZBED9Q6R2W3 1325 aa10.32□□□□□ -0.76
CCDC60-204ENST00000539847 KIF1BO60333 1816 aa10.31□□□□□ -0.76
CCDC60-204ENST00000539847 LARP6Q9BRS8 491 aaKnown RBP10.31□□□□□ -0.76
CCDC60-204ENST00000539847 BCL9LQ86UU0 1499 aa10.3□□□□□ -0.76
CCDC60-204ENST00000539847 PXDNQ92626 1479 aa10.3□□□□□ -0.76
CCDC60-204ENST00000539847 SEMA3EO15041 775 aa10.3□□□□□ -0.76
CCDC60-204ENST00000539847 EIF4G2P78344 907 aaKnown RBP eCLIP10.3□□□□□ -0.76
CCDC60-204ENST00000539847 EP400Q96L91 3159 aa10.29□□□□□ -0.76
CCDC60-204ENST00000539847 SLC24A3Q9HC58 644 aa10.29□□□□□ -0.76
CCDC60-204ENST00000539847 RNF123Q5XPI4 1314 aa10.29□□□□□ -0.76
CCDC60-204ENST00000539847 ABCC11Q96J66 1382 aa10.28□□□□□ -0.76
CCDC60-204ENST00000539847 ANKRD30BQ9BXX2 1392 aa10.28□□□□□ -0.76
CCDC60-204ENST00000539847 GOLGA2Q08379 1002 aa10.28□□□□□ -0.76
CCDC60-204ENST00000539847 ESCO1Q5FWF5 840 aa10.28□□□□□ -0.76
CCDC60-204ENST00000539847 SIRT1Q96EB6 747 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms