RNA–Protein interactions for RNA: ENST00000539563.5

LSAMP-207, Transcript of limbic system associated membrane protein, humanhuman

TSL 3 BASIC

Gene LSAMP, Length 8,821 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-207ENST00000539563 TXNDC2Q86VQ3 553 aa7.78□□□□□ -1.16
LSAMP-207ENST00000539563 WDR63Q8IWG1 891 aa7.78□□□□□ -1.16
LSAMP-207ENST00000539563 SLC52A1Q9NWF4 448 aa7.78□□□□□ -1.16
LSAMP-207ENST00000539563 KIF14Q15058 1648 aa7.78□□□□□ -1.16
LSAMP-207ENST00000539563 THEMISQ8N1K5 641 aaPredicted RBP7.78□□□□□ -1.16
LSAMP-207ENST00000539563 ARAP1Q96P48 1450 aa7.78□□□□□ -1.16
LSAMP-207ENST00000539563 RUFY1Q96T51 708 aa7.78□□□□□ -1.16
LSAMP-207ENST00000539563 ARGLU1Q9NWB6 273 aaPredicted RBP7.77□□□□□ -1.16
LSAMP-207ENST00000539563 TROQ12816 1431 aaPredicted RBP7.77□□□□□ -1.16
LSAMP-207ENST00000539563 TOPBP1Q92547 1522 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 ODF2Q5BJF6 829 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 ANKRD1Q15327 319 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 TCP11L2Q8N4U5 519 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 AEBP2Q6ZN18 517 aaPredicted RBP7.77□□□□□ -1.17
LSAMP-207ENST00000539563 FSD1Q9BTV5 496 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 SURF6O75683 361 aaKnown RBP7.77□□□□□ -1.17
LSAMP-207ENST00000539563 TXLNAP40222 546 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 ERBINQ96RT1 1412 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 RPGRIP1LQ68CZ1 1315 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 MBD3O95983 291 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 PRAM1Q96QH2 718 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 CCDC39Q9UFE4 941 aa7.77□□□□□ -1.17
LSAMP-207ENST00000539563 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.77□□□□□ -1.17
LSAMP-207ENST00000539563 CCDC173Q0VFZ6 552 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 CCDC158Q5M9N0 1113 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 ZNF396Q96N95 335 aaPredicted RBP7.76□□□□□ -1.17
LSAMP-207ENST00000539563 CDK19Q9BWU1 502 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 PTPN23Q9H3S7 1636 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 DHX8Q14562 1220 aaKnown RBP7.76□□□□□ -1.17
LSAMP-207ENST00000539563 TWISTNBQ3B726 338 aaPredicted RBP7.76□□□□□ -1.17
LSAMP-207ENST00000539563 ESCO1Q5FWF5 840 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 SRCIN1Q9C0H9 1055 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 MYO6Q9UM54 1294 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 R3HCC1Q9Y3T6 440 aaKnown RBP7.76□□□□□ -1.17
LSAMP-207ENST00000539563 GNL3LQ9NVN8 582 aaKnown RBP7.76□□□□□ -1.17
LSAMP-207ENST00000539563 CFAP70Q5T0N1 1121 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 FYB1O15117 783 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 FILIP1LQ4L180 1135 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 CT47A1Q5JQC4 288 aaPredicted RBP7.76□□□□□ -1.17
LSAMP-207ENST00000539563 IQGAP2Q13576 1575 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 HMGB2P26583 209 aaKnown RBP7.76□□□□□ -1.17
LSAMP-207ENST00000539563 PRKAR2BP31323 418 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 NAP1L1P55209 391 aaKnown RBP7.76□□□□□ -1.17
LSAMP-207ENST00000539563 RABEP1Q15276 862 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 TTC39AQ5SRH9 613 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 SDF4Q9BRK5 362 aa7.76□□□□□ -1.17
LSAMP-207ENST00000539563 ZNF771Q7L3S4 317 aaPredicted RBP7.76□□□□□ -1.17
LSAMP-207ENST00000539563 CCP110O43303 1012 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 MRE11P49959 708 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 RDXP35241 583 aaKnown RBP7.75□□□□□ -1.17
LSAMP-207ENST00000539563 SMARCE1Q969G3 411 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 SPG7Q9UQ90 795 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 LAMC3Q9Y6N6 1575 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 NUTM2GQ5VZR2 741 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 DAPK1P53355 1430 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 POGZQ7Z3K3 1410 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 SNAPC4Q5SXM2 1469 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 FOSBP53539 338 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 ZSCAN25Q6NSZ9 544 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 MNS1Q8NEH6 495 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 AEBP1Q8IUX7 1158 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 AFAP1Q8N556 730 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 CNNM1Q9NRU3 951 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 NOB1Q9ULX3 412 aaKnown RBP7.75□□□□□ -1.17
LSAMP-207ENST00000539563 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.75□□□□□ -1.17
LSAMP-207ENST00000539563 KINO60870 393 aaKnown RBP7.75□□□□□ -1.17
LSAMP-207ENST00000539563 IFT57Q9NWB7 429 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 RTEL1-TNFRSF6BF6WH68 1400 aa7.75□□□□□ -1.17
LSAMP-207ENST00000539563 NASPP49321 788 aaPredicted RBP7.75□□□□□ -1.17
LSAMP-207ENST00000539563 EPRSP07814 1512 aaKnown RBP7.74□□□□□ -1.17
LSAMP-207ENST00000539563 MAGEC2Q9UBF1 373 aaPredicted RBP7.74□□□□□ -1.17
LSAMP-207ENST00000539563 CABP4P57796 275 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 FAM43AQ8N2R8 423 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 IKQ13123 557 aaPredicted RBP7.74□□□□□ -1.17
LSAMP-207ENST00000539563 WWC2Q6AWC2 1192 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 ATAD2Q6PL18 1390 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 ANKRD30BQ9BXX2 1392 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 OFD1O75665 1012 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 EXOSC9Q06265 439 aaKnown RBP7.74□□□□□ -1.17
LSAMP-207ENST00000539563 CNKSR2Q8WXI2 1034 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 LRRCC1Q9C099 1032 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 PIP4K2AP48426 406 aaPredicted RBP7.74□□□□□ -1.17
LSAMP-207ENST00000539563 CCDC141Q6ZP82 1450 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 ERCC4Q92889 916 aaPredicted RBP7.74□□□□□ -1.17
LSAMP-207ENST00000539563 ZNF428Q96B54 188 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 CDK5RAP3Q96JB5 506 aa7.74□□□□□ -1.17
LSAMP-207ENST00000539563 MTERF4Q7Z6M4 381 aaKnown RBP7.74□□□□□ -1.17
LSAMP-207ENST00000539563 PROSER2Q86WR7 435 aaPredicted RBP7.74□□□□□ -1.17
LSAMP-207ENST00000539563 HDGFL1Q5TGJ6 251 aa7.73□□□□□ -1.17
LSAMP-207ENST00000539563 JMYQ8N9B5 988 aa7.73□□□□□ -1.17
LSAMP-207ENST00000539563 PDIA4P13667 645 aaKnown RBP7.73□□□□□ -1.17
LSAMP-207ENST00000539563 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.73□□□□□ -1.17
LSAMP-207ENST00000539563 TRAK2O60296 914 aa7.73□□□□□ -1.17
LSAMP-207ENST00000539563 NFKBIBQ15653 356 aa7.73□□□□□ -1.17
LSAMP-207ENST00000539563 DNAJC2Q99543 621 aaKnown RBP7.73□□□□□ -1.17
LSAMP-207ENST00000539563 PDZRN3Q9UPQ7 1066 aa7.73□□□□□ -1.17
LSAMP-207ENST00000539563 PRXQ9BXM0 1461 aa7.73□□□□□ -1.17
LSAMP-207ENST00000539563 TSPY26PQ9H489 355 aa7.73□□□□□ -1.17
LSAMP-207ENST00000539563 DACH1Q9UI36 760 aa7.73□□□□□ -1.17
LSAMP-207ENST00000539563 KAT6BQ8WYB5 2073 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms