RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 FAM50AQ14320 339 aaKnown RBP9.3□□□□□ -0.92
PTPRB-203ENST00000538174 SIRT1Q96EB6 747 aa9.3□□□□□ -0.92
PTPRB-203ENST00000538174 AMOTL2Q9Y2J4 779 aa9.29□□□□□ -0.92
PTPRB-203ENST00000538174 ANKRD50Q9ULJ7 1429 aa9.29□□□□□ -0.92
PTPRB-203ENST00000538174 TONSLQ96HA7 1378 aa9.29□□□□□ -0.92
PTPRB-203ENST00000538174 UNC5CLQ8IV45 518 aa9.29□□□□□ -0.92
PTPRB-203ENST00000538174 BCCIPQ9P287 314 aaKnown RBP eCLIP9.29□□□□□ -0.92
PTPRB-203ENST00000538174 COL24A1Q17RW2 1714 aa9.29□□□□□ -0.92
PTPRB-203ENST00000538174 HMGB1P09429 215 aaKnown RBP9.28□□□□□ -0.92
PTPRB-203ENST00000538174 CASZ1Q86V15 1759 aa9.28□□□□□ -0.92
PTPRB-203ENST00000538174 C8orf37Q96NL8 207 aa9.28□□□□□ -0.92
PTPRB-203ENST00000538174 RSPH6AQ9H0K4 717 aa9.28□□□□□ -0.92
PTPRB-203ENST00000538174 CRYBG1Q9Y4K1 1723 aa9.28□□□□□ -0.92
PTPRB-203ENST00000538174 MAP3K5Q99683 1374 aa9.27□□□□□ -0.93
PTPRB-203ENST00000538174 ANKRD30BQ9BXX2 1392 aa9.27□□□□□ -0.93
PTPRB-203ENST00000538174 PPLO60437 1756 aa9.26□□□□□ -0.93
PTPRB-203ENST00000538174 ARHGEF10O15013 1369 aa9.26□□□□□ -0.93
PTPRB-203ENST00000538174 DCAF8L1A6NGE4 600 aa9.26□□□□□ -0.93
PTPRB-203ENST00000538174 ZBTB22O15209 634 aa9.26□□□□□ -0.93
PTPRB-203ENST00000538174 ZNF326Q5BKZ1 582 aaKnown RBP9.26□□□□□ -0.93
PTPRB-203ENST00000538174 SALL2Q9Y467 1007 aaPredicted RBP9.26□□□□□ -0.93
PTPRB-203ENST00000538174 ANKARQ7Z5J8 1434 aa9.25□□□□□ -0.93
PTPRB-203ENST00000538174 BCL9O00512 1426 aa9.25□□□□□ -0.93
PTPRB-203ENST00000538174 QSER1Q2KHR3 1735 aa9.24□□□□□ -0.93
PTPRB-203ENST00000538174 IFT172Q9UG01 1749 aa9.24□□□□□ -0.93
PTPRB-203ENST00000538174 TNS3Q68CZ2 1445 aa9.24□□□□□ -0.93
PTPRB-203ENST00000538174 TRPM3Q9HCF6 1732 aaPredicted RBP9.24□□□□□ -0.93
PTPRB-203ENST00000538174 ALS2Q96Q42 1657 aa9.23□□□□□ -0.93
PTPRB-203ENST00000538174 DLC1Q96QB1 1528 aa9.23□□□□□ -0.93
PTPRB-203ENST00000538174 ERICH6BQ5W0A0 696 aa9.23□□□□□ -0.93
PTPRB-203ENST00000538174 CHD4Q14839 1912 aa9.23□□□□□ -0.93
PTPRB-203ENST00000538174 NAP1L5Q96NT1 182 aaPredicted RBP9.23□□□□□ -0.93
PTPRB-203ENST00000538174 SPATA31E1Q6ZUB1 1445 aa9.22□□□□□ -0.93
PTPRB-203ENST00000538174 EIF3AQ14152 1382 aaKnown RBP9.22□□□□□ -0.93
PTPRB-203ENST00000538174 NRXN1Q9ULB1 1477 aa9.22□□□□□ -0.93
PTPRB-203ENST00000538174 PUS7Q96PZ0 661 aaKnown RBP9.22□□□□□ -0.93
PTPRB-203ENST00000538174 PARP4Q9UKK3 1724 aaKnown RBP9.22□□□□□ -0.93
PTPRB-203ENST00000538174 SPATA31A3Q5VYP0 1347 aa9.21□□□□□ -0.93
PTPRB-203ENST00000538174 CCDC9Q9Y3X0 531 aaKnown RBP9.21□□□□□ -0.93
PTPRB-203ENST00000538174 CLTCL1P53675 1640 aa9.21□□□□□ -0.93
PTPRB-203ENST00000538174 KRT27Q7Z3Y8 459 aa9.2□□□□□ -0.94
PTPRB-203ENST00000538174 METP08581 1390 aa9.2□□□□□ -0.94
PTPRB-203ENST00000538174 YY1P25490 414 aa9.2□□□□□ -0.94
PTPRB-203ENST00000538174 MPHOSPH9Q99550 1183 aa9.2□□□□□ -0.94
PTPRB-203ENST00000538174 KTN1Q86UP2 1357 aaKnown RBP9.2□□□□□ -0.94
PTPRB-203ENST00000538174 RBM10P98175 930 aaKnown RBP9.19□□□□□ -0.94
PTPRB-203ENST00000538174 ABCC11Q96J66 1382 aa9.19□□□□□ -0.94
PTPRB-203ENST00000538174 INSRP06213 1382 aa9.18□□□□□ -0.94
PTPRB-203ENST00000538174 AATKQ6ZMQ8 1374 aa9.18□□□□□ -0.94
PTPRB-203ENST00000538174 PEAK1Q9H792 1746 aa9.18□□□□□ -0.94
PTPRB-203ENST00000538174 ROCK2O75116 1388 aaKnown RBP9.18□□□□□ -0.94
PTPRB-203ENST00000538174 PSME1Q06323 249 aa9.18□□□□□ -0.94
PTPRB-203ENST00000538174 SIN3AQ96ST3 1273 aa9.18□□□□□ -0.94
PTPRB-203ENST00000538174 ATP7BP35670 1465 aa9.17□□□□□ -0.94
PTPRB-203ENST00000538174 BRD4O60885 1362 aaPredicted RBP9.17□□□□□ -0.94
PTPRB-203ENST00000538174 ANP32CO43423 234 aa9.17□□□□□ -0.94
PTPRB-203ENST00000538174 SEPT12Q8IYM1 358 aa9.17□□□□□ -0.94
PTPRB-203ENST00000538174 ABCC6O95255 1503 aa9.17□□□□□ -0.94
PTPRB-203ENST00000538174 CAMTA1Q9Y6Y1 1673 aa9.16□□□□□ -0.94
PTPRB-203ENST00000538174 VGFO15240 615 aaPredicted RBP9.16□□□□□ -0.94
PTPRB-203ENST00000538174 ITGAEP38570 1179 aa9.16□□□□□ -0.94
PTPRB-203ENST00000538174 STAC3Q96MF2 364 aa9.16□□□□□ -0.94
PTPRB-203ENST00000538174 ITSN1Q15811 1721 aa9.16□□□□□ -0.94
PTPRB-203ENST00000538174 BRPF3Q9ULD4 1205 aa9.16□□□□□ -0.94
PTPRB-203ENST00000538174 TRPM1Q7Z4N2 1603 aa9.15□□□□□ -0.94
PTPRB-203ENST00000538174 EIF4G2P78344 907 aaKnown RBP eCLIP9.15□□□□□ -0.94
PTPRB-203ENST00000538174 FKBP8Q14318 412 aa9.15□□□□□ -0.94
PTPRB-203ENST00000538174 CAMKK2Q96RR4 588 aa9.15□□□□□ -0.94
PTPRB-203ENST00000538174 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.15□□□□□ -0.94
PTPRB-203ENST00000538174 WNK3Q9BYP7 1800 aa9.15□□□□□ -0.94
PTPRB-203ENST00000538174 ROBO2Q9HCK4 1378 aa9.15□□□□□ -0.94
PTPRB-203ENST00000538174 RRP7BPQ9NSQ0 103 aa9.15□□□□□ -0.95
PTPRB-203ENST00000538174 NBPF8Q3BBV2 869 aa9.14□□□□□ -0.95
PTPRB-203ENST00000538174 NBPF14Q5TI25 921 aa9.14□□□□□ -0.95
PTPRB-203ENST00000538174 SENP3Q9H4L4 574 aaPredicted RBP9.14□□□□□ -0.95
PTPRB-203ENST00000538174 FAM196AQ6ZSG2 479 aa9.14□□□□□ -0.95
PTPRB-203ENST00000538174 BARGINQ6ZT62 677 aa9.13□□□□□ -0.95
PTPRB-203ENST00000538174 PHRF1Q9P1Y6 1649 aaKnown RBP9.13□□□□□ -0.95
PTPRB-203ENST00000538174 SPATA31A5Q5VU36 1347 aa9.13□□□□□ -0.95
PTPRB-203ENST00000538174 SPATA31A7Q8IWB4 1347 aa9.13□□□□□ -0.95
PTPRB-203ENST00000538174 ADAMTS2O95450 1211 aa9.12□□□□□ -0.95
PTPRB-203ENST00000538174 SPON1Q9HCB6 807 aa9.12□□□□□ -0.95
PTPRB-203ENST00000538174 CCDC7Q96M83 1385 aa9.12□□□□□ -0.95
PTPRB-203ENST00000538174 LMO7Q8WWI1 1683 aa9.12□□□□□ -0.95
PTPRB-203ENST00000538174 KCNQ2O43526 872 aa9.11□□□□□ -0.95
PTPRB-203ENST00000538174 THRAP3Q9Y2W1 955 aaKnown RBP9.11□□□□□ -0.95
PTPRB-203ENST00000538174 NRKQ7Z2Y5 1582 aa9.11□□□□□ -0.95
PTPRB-203ENST00000538174 C1QTNF8P60827 252 aa9.1□□□□□ -0.95
PTPRB-203ENST00000538174 GPRASP1Q5JY77 1395 aa9.1□□□□□ -0.95
PTPRB-203ENST00000538174 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.09□□□□□ -0.95
PTPRB-203ENST00000538174 SBF2Q86WG5 1849 aa9.09□□□□□ -0.95
PTPRB-203ENST00000538174 HMGB2P26583 209 aaKnown RBP9.09□□□□□ -0.95
PTPRB-203ENST00000538174 TICAM2Q86XR7 235 aa9.09□□□□□ -0.95
PTPRB-203ENST00000538174 ZFP91Q96JP5 570 aaPredicted RBP9.09□□□□□ -0.95
PTPRB-203ENST00000538174 SUPT16HQ9Y5B9 1047 aaKnown RBP9.09□□□□□ -0.95
PTPRB-203ENST00000538174 PAPPAQ13219 1627 aa9.09□□□□□ -0.95
PTPRB-203ENST00000538174 WASHC2AQ641Q2 1341 aa9.09□□□□□ -0.95
PTPRB-203ENST00000538174 ZNF592Q92610 1267 aa9.08□□□□□ -0.96
PTPRB-203ENST00000538174 MYOM1P52179 1685 aa9.08□□□□□ -0.96
PTPRB-203ENST00000538174 PLSCR1O15162 318 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms