RNA–Protein interactions for RNA: ENST00000537466.6

GPN3-202, Transcript of GPN-loop GTPase 3, humanhuman

TSL 1 (best) BASIC

Gene GPN3, Length 1,491 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPN3-202ENST00000537466 ST20-MTHFSA0A0A6YYL1 179 aa24.48■■□□□ 1.51
GPN3-202ENST00000537466 PHRF1Q9P1Y6 1649 aaKnown RBP24.46■■□□□ 1.51
GPN3-202ENST00000537466 USP47Q96K76 1375 aa24.46■■□□□ 1.51
GPN3-202ENST00000537466 TESK2Q96S53 571 aa24.45■■□□□ 1.51
GPN3-202ENST00000537466 PLCH1Q4KWH8 1693 aa24.45■■□□□ 1.5
GPN3-202ENST00000537466 ATAD2Q6PL18 1390 aa24.45■■□□□ 1.5
GPN3-202ENST00000537466 HAP1P54257 671 aaPredicted RBP24.45■■□□□ 1.5
GPN3-202ENST00000537466 SOCS7O14512 581 aa24.44■■□□□ 1.5
GPN3-202ENST00000537466 FNBP4Q8N3X1 1017 aaPredicted RBP24.44■■□□□ 1.5
GPN3-202ENST00000537466 USP6P35125 1406 aa24.43■■□□□ 1.5
GPN3-202ENST00000537466 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.43■■□□□ 1.5
GPN3-202ENST00000537466 USP21Q9UK80 565 aa24.43■■□□□ 1.5
GPN3-202ENST00000537466 MON2Q7Z3U7 1717 aa24.42■■□□□ 1.5
GPN3-202ENST00000537466 BCL9LQ86UU0 1499 aa24.41■■□□□ 1.5
GPN3-202ENST00000537466 NUTM2GQ5VZR2 741 aa24.41■■□□□ 1.5
GPN3-202ENST00000537466 NRKQ7Z2Y5 1582 aa24.41■■□□□ 1.5
GPN3-202ENST00000537466 QTRT2Q9H974 415 aaKnown RBP24.4■■□□□ 1.5
GPN3-202ENST00000537466 NWD2Q9ULI1 1742 aa24.4■■□□□ 1.5
GPN3-202ENST00000537466 SLIT2O94813 1529 aa24.4■■□□□ 1.5
GPN3-202ENST00000537466 PIK3C2AO00443 1686 aa24.39■■□□□ 1.5
GPN3-202ENST00000537466 SSH2Q76I76 1423 aa24.39■■□□□ 1.49
GPN3-202ENST00000537466 CPSF1Q10570 1443 aaKnown RBP24.38■■□□□ 1.49
GPN3-202ENST00000537466 RXRBP28702 533 aa24.38■■□□□ 1.49
GPN3-202ENST00000537466 ABTB2Q8N961 1025 aa24.38■■□□□ 1.49
GPN3-202ENST00000537466 BRD4O60885 1362 aaPredicted RBP24.37■■□□□ 1.49
GPN3-202ENST00000537466 COL14A1Q05707 1796 aaKnown RBP24.37■■□□□ 1.49
GPN3-202ENST00000537466 CD163L1Q9NR16 1453 aa24.37■■□□□ 1.49
GPN3-202ENST00000537466 ATRNO75882 1429 aa24.36■■□□□ 1.49
GPN3-202ENST00000537466 NRAPQ86VF7 1730 aa24.36■■□□□ 1.49
GPN3-202ENST00000537466 FAM83GA6ND36 823 aa24.34■■□□□ 1.49
GPN3-202ENST00000537466 TRPC5Q9UL62 973 aaPredicted RBP24.34■■□□□ 1.49
GPN3-202ENST00000537466 TMC1Q8TDI8 760 aa24.33■■□□□ 1.49
GPN3-202ENST00000537466 PUS7Q96PZ0 661 aaKnown RBP24.33■■□□□ 1.49
GPN3-202ENST00000537466 ZNF692Q9BU19 519 aaPredicted RBP24.33■■□□□ 1.49
GPN3-202ENST00000537466 SLC12A5Q9H2X9 1139 aa24.33■■□□□ 1.49
GPN3-202ENST00000537466 KTN1Q86UP2 1357 aaKnown RBP24.33■■□□□ 1.48
GPN3-202ENST00000537466 RBM6P78332 1123 aaKnown RBP24.32■■□□□ 1.48
GPN3-202ENST00000537466 CDK12Q9NYV4 1490 aaPredicted RBP24.32■■□□□ 1.48
GPN3-202ENST00000537466 UNC5CLQ8IV45 518 aa24.32■■□□□ 1.48
GPN3-202ENST00000537466 USP19O94966 1318 aa24.31■■□□□ 1.48
GPN3-202ENST00000537466 SLC24A1O60721 1099 aa24.31■■□□□ 1.48
GPN3-202ENST00000537466 TTC21BQ7Z4L5 1316 aa24.3■■□□□ 1.48
GPN3-202ENST00000537466 TMF1P82094 1093 aa24.3■■□□□ 1.48
GPN3-202ENST00000537466 NLRP13Q86W25 1043 aa24.3■■□□□ 1.48
GPN3-202ENST00000537466 RGS12O14924 1447 aa24.29■■□□□ 1.48
GPN3-202ENST00000537466 GLI3P10071 1580 aa24.29■■□□□ 1.48
GPN3-202ENST00000537466 KIAA0232Q92628 1395 aa24.29■■□□□ 1.48
GPN3-202ENST00000537466 SLIT3O75094 1523 aa24.28■■□□□ 1.48
GPN3-202ENST00000537466 NLRP6P59044 892 aa24.27■■□□□ 1.48
GPN3-202ENST00000537466 ZC3H6P61129 1189 aaKnown RBP24.27■■□□□ 1.48
GPN3-202ENST00000537466 A0A1W2PP64 1363 aa24.27■■□□□ 1.48
GPN3-202ENST00000537466 PRDM11Q9NQV5 511 aa24.26■■□□□ 1.47
GPN3-202ENST00000537466 BTG4Q9NY30 223 aa24.26■■□□□ 1.47
GPN3-202ENST00000537466 MYOM1P52179 1685 aa24.26■■□□□ 1.47
GPN3-202ENST00000537466 TTC21AQ8NDW8 1320 aa24.25■■□□□ 1.47
GPN3-202ENST00000537466 USP54Q70EL1 1684 aa24.25■■□□□ 1.47
GPN3-202ENST00000537466 CHRNA2Q15822 529 aa24.25■■□□□ 1.47
GPN3-202ENST00000537466 HDGFL2Q7Z4V5 671 aaPredicted RBP24.25■■□□□ 1.47
GPN3-202ENST00000537466 GJD4Q96KN9 370 aaPredicted RBP24.25■■□□□ 1.47
GPN3-202ENST00000537466 NINLQ9Y2I6 1382 aa24.25■■□□□ 1.47
GPN3-202ENST00000537466 LMO7Q8WWI1 1683 aa24.24■■□□□ 1.47
GPN3-202ENST00000537466 GCP02774 474 aa24.24■■□□□ 1.47
GPN3-202ENST00000537466 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.23■■□□□ 1.47
GPN3-202ENST00000537466 TERF2IPQ9NYB0 399 aa24.23■■□□□ 1.47
GPN3-202ENST00000537466 EDC4Q6P2E9 1401 aaKnown RBP24.22■■□□□ 1.47
GPN3-202ENST00000537466 VPS72Q15906 364 aa24.22■■□□□ 1.47
GPN3-202ENST00000537466 CPDO75976 1380 aa24.21■■□□□ 1.47
GPN3-202ENST00000537466 HSPA5P11021 654 aaKnown RBP24.2■■□□□ 1.47
GPN3-202ENST00000537466 EIF4G2P78344 907 aaKnown RBP eCLIP24.2■■□□□ 1.47
GPN3-202ENST00000537466 ZRANB1Q9UGI0 708 aa24.2■■□□□ 1.47
GPN3-202ENST00000537466 BRWD3Q6RI45 1802 aa24.2■■□□□ 1.46
GPN3-202ENST00000537466 CAMTA1Q9Y6Y1 1673 aa24.19■■□□□ 1.46
GPN3-202ENST00000537466 COL18A1P39060 1754 aa24.19■■□□□ 1.46
GPN3-202ENST00000537466 CDCA8Q53HL2 280 aa24.19■■□□□ 1.46
GPN3-202ENST00000537466 NME9Q86XW9 330 aa24.19■■□□□ 1.46
GPN3-202ENST00000537466 RGPD5Q99666 1765 aa24.18■■□□□ 1.46
GPN3-202ENST00000537466 CCDC9Q9Y3X0 531 aaKnown RBP24.18■■□□□ 1.46
GPN3-202ENST00000537466 ANKRD36BQ8N2N9 1353 aa24.17■■□□□ 1.46
GPN3-202ENST00000537466 NFAT5O94916 1531 aa24.17■■□□□ 1.46
GPN3-202ENST00000537466 USP31Q70CQ4 1352 aa24.17■■□□□ 1.46
GPN3-202ENST00000537466 LTN1O94822 1766 aa24.15■■□□□ 1.46
GPN3-202ENST00000537466 ZBTB7CA1YPR0 619 aa24.14■■□□□ 1.46
GPN3-202ENST00000537466 SOX12O15370 315 aa24.14■■□□□ 1.46
GPN3-202ENST00000537466 STRN4Q9NRL3 753 aa24.13■■□□□ 1.45
GPN3-202ENST00000537466 KIF20BQ96Q89 1820 aa24.13■■□□□ 1.45
GPN3-202ENST00000537466 KCNH5Q8NCM2 988 aa24.13■■□□□ 1.45
GPN3-202ENST00000537466 OVOS2A0A0J9YW53 1432 aa24.12■■□□□ 1.45
GPN3-202ENST00000537466 OVOS2Q6IE36 1432 aa24.12■■□□□ 1.45
GPN3-202ENST00000537466 SPATA31A5Q5VU36 1347 aa24.11■■□□□ 1.45
GPN3-202ENST00000537466 SPATA31A7Q8IWB4 1347 aa24.11■■□□□ 1.45
GPN3-202ENST00000537466 COL5A2P05997 1499 aaPredicted RBP24.1■■□□□ 1.45
GPN3-202ENST00000537466 AATKQ6ZMQ8 1374 aa24.1■■□□□ 1.45
GPN3-202ENST00000537466 ARHGEF25Q86VW2 580 aa24.09■■□□□ 1.45
GPN3-202ENST00000537466 ONECUT3O60422 494 aaPredicted RBP24.08■■□□□ 1.45
GPN3-202ENST00000537466 EVA1CP58658 441 aa24.08■■□□□ 1.45
GPN3-202ENST00000537466 POLR3GLQ9BT43 218 aa24.08■■□□□ 1.45
GPN3-202ENST00000537466 THSD7AQ9UPZ6 1657 aa24.08■■□□□ 1.44
GPN3-202ENST00000537466 FAM98CQ17RN3 349 aaKnown RBP24.07■■□□□ 1.44
GPN3-202ENST00000537466 SEPT12Q8IYM1 358 aa24.07■■□□□ 1.44
GPN3-202ENST00000537466 SPATA31A1Q5TZJ5 1347 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms