RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 SHANK2Q9UPX8 1470 aa7.84□□□□□ -1.15
VPS33A-203ENST00000536212 C6orf132Q5T0Z8 1188 aa7.84□□□□□ -1.15
VPS33A-203ENST00000536212 CFDP1Q9UEE9 299 aaPredicted RBP7.84□□□□□ -1.15
VPS33A-203ENST00000536212 DHX29Q7Z478 1369 aaKnown RBP7.84□□□□□ -1.16
VPS33A-203ENST00000536212 ANKRD30AQ9BXX3 1397 aa7.84□□□□□ -1.16
VPS33A-203ENST00000536212 POLR1AO95602 1720 aaPredicted RBP7.83□□□□□ -1.16
VPS33A-203ENST00000536212 KDM5DQ9BY66 1539 aa7.83□□□□□ -1.16
VPS33A-203ENST00000536212 CROCC2H7BZ55 1655 aa7.83□□□□□ -1.16
VPS33A-203ENST00000536212 ABCC10Q5T3U5 1492 aa7.83□□□□□ -1.16
VPS33A-203ENST00000536212 PLB1Q6P1J6 1458 aa7.83□□□□□ -1.16
VPS33A-203ENST00000536212 ARID3CA6NKF2 412 aa7.83□□□□□ -1.16
VPS33A-203ENST00000536212 TJAP1Q5JTD0 557 aa7.83□□□□□ -1.16
VPS33A-203ENST00000536212 KRI1Q8N9T8 703 aaKnown RBP7.83□□□□□ -1.16
VPS33A-203ENST00000536212 CARMIL2Q6F5E8 1435 aa7.83□□□□□ -1.16
VPS33A-203ENST00000536212 ABCA8O94911 1581 aa7.83□□□□□ -1.16
VPS33A-203ENST00000536212 PTPRGP23470 1445 aa7.82□□□□□ -1.16
VPS33A-203ENST00000536212 AK7Q96M32 723 aa7.82□□□□□ -1.16
VPS33A-203ENST00000536212 EPAS1Q99814 870 aa7.82□□□□□ -1.16
VPS33A-203ENST00000536212 PPP4R2Q9NY27 417 aa7.82□□□□□ -1.16
VPS33A-203ENST00000536212 RALGAPBQ86X10 1494 aa7.81□□□□□ -1.16
VPS33A-203ENST00000536212 FANCIQ9NVI1 1328 aa7.81□□□□□ -1.16
VPS33A-203ENST00000536212 ANKRD50Q9ULJ7 1429 aa7.81□□□□□ -1.16
VPS33A-203ENST00000536212 GRXCR2A6NFK2 248 aa7.81□□□□□ -1.16
VPS33A-203ENST00000536212 ZNF775Q96BV0 537 aaPredicted RBP7.81□□□□□ -1.16
VPS33A-203ENST00000536212 MRS2Q9HD23 443 aa7.81□□□□□ -1.16
VPS33A-203ENST00000536212 ARHGEF12Q9NZN5 1544 aa7.81□□□□□ -1.16
VPS33A-203ENST00000536212 KIF14Q15058 1648 aa7.81□□□□□ -1.16
VPS33A-203ENST00000536212 PPP1R18Q6NYC8 613 aa7.8□□□□□ -1.16
VPS33A-203ENST00000536212 ROCK2O75116 1388 aaKnown RBP7.8□□□□□ -1.16
VPS33A-203ENST00000536212 USP47Q96K76 1375 aa7.8□□□□□ -1.16
VPS33A-203ENST00000536212 ATP10BO94823 1461 aa7.8□□□□□ -1.16
VPS33A-203ENST00000536212 KDM5CP41229 1560 aa7.8□□□□□ -1.16
VPS33A-203ENST00000536212 RNF123Q5XPI4 1314 aa7.79□□□□□ -1.16
VPS33A-203ENST00000536212 SMG6Q86US8 1419 aaKnown RBP7.79□□□□□ -1.16
VPS33A-203ENST00000536212 PPP4CP60510 307 aa7.79□□□□□ -1.16
VPS33A-203ENST00000536212 CHMP7Q8WUX9 453 aaPredicted RBP7.79□□□□□ -1.16
VPS33A-203ENST00000536212 ARHGEF5Q12774 1597 aa7.79□□□□□ -1.16
VPS33A-203ENST00000536212 C9orf84Q5VXU9 1444 aa7.78□□□□□ -1.16
VPS33A-203ENST00000536212 BCORL1Q5H9F3 1711 aa7.78□□□□□ -1.16
VPS33A-203ENST00000536212 PLEKHD1A6NEE1 506 aa7.78□□□□□ -1.16
VPS33A-203ENST00000536212 NUTM2FA1L443 756 aa7.77□□□□□ -1.17
VPS33A-203ENST00000536212 GPR37O15354 613 aa7.77□□□□□ -1.17
VPS33A-203ENST00000536212 OSBPP22059 807 aa7.77□□□□□ -1.17
VPS33A-203ENST00000536212 FAM9BQ8IZU0 186 aa7.77□□□□□ -1.17
VPS33A-203ENST00000536212 BCL11AQ9H165 835 aa7.77□□□□□ -1.17
VPS33A-203ENST00000536212 IL21Q9HBE4 155 aa7.77□□□□□ -1.17
VPS33A-203ENST00000536212 PDZRN3Q9UPQ7 1066 aa7.77□□□□□ -1.17
VPS33A-203ENST00000536212 KTN1Q86UP2 1357 aaKnown RBP7.76□□□□□ -1.17
VPS33A-203ENST00000536212 CDC42BPAQ5VT25 1732 aa7.76□□□□□ -1.17
VPS33A-203ENST00000536212 RSPH4AQ5TD94 716 aa7.76□□□□□ -1.17
VPS33A-203ENST00000536212 DDX12PQ92771 950 aa7.76□□□□□ -1.17
VPS33A-203ENST00000536212 MTRQ99707 1265 aa7.76□□□□□ -1.17
VPS33A-203ENST00000536212 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.76□□□□□ -1.17
VPS33A-203ENST00000536212 NUP155O75694 1391 aa7.75□□□□□ -1.17
VPS33A-203ENST00000536212 IRX6P78412 446 aaPredicted RBP7.75□□□□□ -1.17
VPS33A-203ENST00000536212 PACS2Q86VP3 889 aa7.75□□□□□ -1.17
VPS33A-203ENST00000536212 ZNF777Q9ULD5 760 aaPredicted RBP7.75□□□□□ -1.17
VPS33A-203ENST00000536212 NUDCQ9Y266 331 aa7.75□□□□□ -1.17
VPS33A-203ENST00000536212 LRPPRCP42704 1394 aaKnown RBP7.74□□□□□ -1.17
VPS33A-203ENST00000536212 KIF15Q9NS87 1388 aa7.74□□□□□ -1.17
VPS33A-203ENST00000536212 PNISRQ8TF01 805 aaKnown RBP7.74□□□□□ -1.17
VPS33A-203ENST00000536212 TSKSQ9UJT2 592 aa7.74□□□□□ -1.17
VPS33A-203ENST00000536212 ERCC6Q03468 1493 aa7.74□□□□□ -1.17
VPS33A-203ENST00000536212 BRD4O60885 1362 aaPredicted RBP7.73□□□□□ -1.17
VPS33A-203ENST00000536212 MAST1Q9Y2H9 1570 aa7.73□□□□□ -1.17
VPS33A-203ENST00000536212 TRIM66O15016 1216 aa7.73□□□□□ -1.17
VPS33A-203ENST00000536212 FCHSD2O94868 740 aa7.73□□□□□ -1.17
VPS33A-203ENST00000536212 TSPY4P0CV99 314 aa7.73□□□□□ -1.17
VPS33A-203ENST00000536212 TSPY10P0CW01 314 aa7.73□□□□□ -1.17
VPS33A-203ENST00000536212 CCDC141Q6ZP82 1450 aa7.73□□□□□ -1.17
VPS33A-203ENST00000536212 MINK1Q8N4C8 1332 aaPredicted RBP7.73□□□□□ -1.17
VPS33A-203ENST00000536212 GPRASP1Q5JY77 1395 aa7.72□□□□□ -1.17
VPS33A-203ENST00000536212 MAP2K5Q13163 448 aa7.72□□□□□ -1.17
VPS33A-203ENST00000536212 RALBP1Q15311 655 aa7.72□□□□□ -1.17
VPS33A-203ENST00000536212 SAMD7Q7Z3H4 446 aa7.72□□□□□ -1.17
VPS33A-203ENST00000536212 CARD11Q9BXL7 1154 aa7.72□□□□□ -1.17
VPS33A-203ENST00000536212 GPBP1L1Q9HC44 474 aaPredicted RBP7.72□□□□□ -1.17
VPS33A-203ENST00000536212 INSRP06213 1382 aa7.71□□□□□ -1.17
VPS33A-203ENST00000536212 GNPATO15228 680 aa7.71□□□□□ -1.18
VPS33A-203ENST00000536212 PDE4DQ08499 809 aa7.71□□□□□ -1.18
VPS33A-203ENST00000536212 HIC1Q14526 733 aa7.71□□□□□ -1.18
VPS33A-203ENST00000536212 ZNF516Q92618 1163 aa7.71□□□□□ -1.18
VPS33A-203ENST00000536212 FAM135AQ9P2D6 1515 aa7.71□□□□□ -1.18
VPS33A-203ENST00000536212 MYBBP1AQ9BQG0 1328 aaKnown RBP7.71□□□□□ -1.18
VPS33A-203ENST00000536212 SAMD9LQ8IVG5 1584 aa7.71□□□□□ -1.18
VPS33A-203ENST00000536212 PRAG1Q86YV5 1406 aa7.7□□□□□ -1.18
VPS33A-203ENST00000536212 E9PCH4 1651 aa7.7□□□□□ -1.18
VPS33A-203ENST00000536212 HNRNPMP52272 730 aaKnown RBP eCLIP7.7□□□□□ -1.18
VPS33A-203ENST00000536212 B4GALNT3Q6L9W6 998 aa7.7□□□□□ -1.18
VPS33A-203ENST00000536212 RBM33Q96EV2 1170 aaKnown RBP7.7□□□□□ -1.18
VPS33A-203ENST00000536212 KDM4CQ9H3R0 1056 aa7.7□□□□□ -1.18
VPS33A-203ENST00000536212 UNC13BO14795 1591 aa7.7□□□□□ -1.18
VPS33A-203ENST00000536212 LAMC1P11047 1609 aa7.7□□□□□ -1.18
VPS33A-203ENST00000536212 PREX2Q70Z35 1606 aa7.7□□□□□ -1.18
VPS33A-203ENST00000536212 ATP10AO60312 1499 aa7.69□□□□□ -1.18
VPS33A-203ENST00000536212 PLA2R1Q13018 1463 aa7.69□□□□□ -1.18
VPS33A-203ENST00000536212 ST20-MTHFSA0A0A6YYL1 179 aa7.69□□□□□ -1.18
VPS33A-203ENST00000536212 PRIM1P49642 420 aaKnown RBP7.69□□□□□ -1.18
VPS33A-203ENST00000536212 CCDC102AQ96A19 550 aa7.69□□□□□ -1.18
VPS33A-203ENST00000536212 PARD3Q8TEW0 1356 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms