RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 ST20-MTHFSA0A0A6YYL1 179 aa8.4□□□□□ -1.06
SYNE1-233ENST00000535896 HOXB1P14653 301 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-233ENST00000535896 DOK7Q18PE1 504 aa8.4□□□□□ -1.06
SYNE1-233ENST00000535896 ZNF710Q8N1W2 664 aa8.4□□□□□ -1.06
SYNE1-233ENST00000535896 IPO9Q96P70 1041 aaKnown RBP8.4□□□□□ -1.06
SYNE1-233ENST00000535896 CIZ1Q9ULV3 898 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-233ENST00000535896 NPC1L1Q9UHC9 1359 aa8.4□□□□□ -1.06
SYNE1-233ENST00000535896 KDM5AP29375 1690 aaKnown RBP8.4□□□□□ -1.06
SYNE1-233ENST00000535896 MYOM1P52179 1685 aa8.4□□□□□ -1.06
SYNE1-233ENST00000535896 SETD1BQ9UPS6 1966 aaKnown RBP8.4□□□□□ -1.06
SYNE1-233ENST00000535896 MYO3AQ8NEV4 1616 aa8.39□□□□□ -1.07
SYNE1-233ENST00000535896 SPATA31D1Q6ZQQ2 1576 aa8.38□□□□□ -1.07
SYNE1-233ENST00000535896 SPOCK2Q92563 424 aa8.38□□□□□ -1.07
SYNE1-233ENST00000535896 PIK3C2GO75747 1445 aa8.38□□□□□ -1.07
SYNE1-233ENST00000535896 ERVK-7P63135 1459 aa8.38□□□□□ -1.07
SYNE1-233ENST00000535896 IFT172Q9UG01 1749 aa8.38□□□□□ -1.07
SYNE1-233ENST00000535896 PER1O15534 1290 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-233ENST00000535896 ZNF326Q5BKZ1 582 aaKnown RBP8.37□□□□□ -1.07
SYNE1-233ENST00000535896 DCAF11Q8TEB1 546 aa8.37□□□□□ -1.07
SYNE1-233ENST00000535896 RCAN3Q9UKA8 241 aa8.37□□□□□ -1.07
SYNE1-233ENST00000535896 PREX1Q8TCU6 1659 aa8.37□□□□□ -1.07
SYNE1-233ENST00000535896 ERBB3P21860 1342 aa8.37□□□□□ -1.07
SYNE1-233ENST00000535896 EIF3AQ14152 1382 aaKnown RBP8.37□□□□□ -1.07
SYNE1-233ENST00000535896 CEBPAP49715 358 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-233ENST00000535896 USP35Q9P2H5 1018 aa8.36□□□□□ -1.07
SYNE1-233ENST00000535896 PTPRTO14522 1441 aa8.36□□□□□ -1.07
SYNE1-233ENST00000535896 NLRP1Q9C000 1473 aa8.36□□□□□ -1.07
SYNE1-233ENST00000535896 TNRQ92752 1358 aa8.36□□□□□ -1.07
SYNE1-233ENST00000535896 ASXL1Q8IXJ9 1541 aa8.36□□□□□ -1.07
SYNE1-233ENST00000535896 RIMBP2O15034 1052 aa8.35□□□□□ -1.07
SYNE1-233ENST00000535896 NOS1P29475 1434 aa8.35□□□□□ -1.07
SYNE1-233ENST00000535896 TMF1P82094 1093 aa8.35□□□□□ -1.07
SYNE1-233ENST00000535896 CDCA8Q53HL2 280 aa8.35□□□□□ -1.07
SYNE1-233ENST00000535896 NGEFQ8N5V2 710 aa8.35□□□□□ -1.07
SYNE1-233ENST00000535896 MYOM2P54296 1465 aa8.35□□□□□ -1.07
SYNE1-233ENST00000535896 SCAF11Q99590 1463 aaKnown RBP8.35□□□□□ -1.07
SYNE1-233ENST00000535896 KIF1BO60333 1816 aa8.35□□□□□ -1.07
SYNE1-233ENST00000535896 TESK2Q96S53 571 aa8.35□□□□□ -1.07
SYNE1-233ENST00000535896 ZNF142P52746 1687 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-233ENST00000535896 CLTCL1P53675 1640 aa8.34□□□□□ -1.07
SYNE1-233ENST00000535896 USP32Q8NFA0 1604 aa8.34□□□□□ -1.07
SYNE1-233ENST00000535896 FBXO31Q5XUX0 539 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-233ENST00000535896 IFNLR1Q8IU57 520 aaPredicted RBP8.34□□□□□ -1.07
SYNE1-233ENST00000535896 CEP170BQ9Y4F5 1589 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-233ENST00000535896 DISP3Q9P2K9 1392 aa8.33□□□□□ -1.08
SYNE1-233ENST00000535896 CFAP65Q6ZU64 1925 aaKnown RBP8.33□□□□□ -1.08
SYNE1-233ENST00000535896 A2ML1A8K2U0 1454 aa8.33□□□□□ -1.08
SYNE1-233ENST00000535896 RTL5Q5HYW3 569 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-233ENST00000535896 DDRGK1Q96HY6 314 aa8.33□□□□□ -1.08
SYNE1-233ENST00000535896 POLR3GLQ9BT43 218 aa8.33□□□□□ -1.08
SYNE1-233ENST00000535896 SLC52A1Q9NWF4 448 aa8.33□□□□□ -1.08
SYNE1-233ENST00000535896 SETBP1Q9Y6X0 1596 aa8.32□□□□□ -1.08
SYNE1-233ENST00000535896 NINLQ9Y2I6 1382 aa8.32□□□□□ -1.08
SYNE1-233ENST00000535896 LMTK3Q96Q04 1460 aa8.32□□□□□ -1.08
SYNE1-233ENST00000535896 ZSWIM6Q9HCJ5 1215 aa8.32□□□□□ -1.08
SYNE1-233ENST00000535896 PIK3C2BO00750 1634 aa8.32□□□□□ -1.08
SYNE1-233ENST00000535896 SBNO2Q9Y2G9 1366 aa8.31□□□□□ -1.08
SYNE1-233ENST00000535896 DEKP35659 375 aaKnown RBP8.31□□□□□ -1.08
SYNE1-233ENST00000535896 EFCAB3Q8N7B9 438 aa8.31□□□□□ -1.08
SYNE1-233ENST00000535896 RNF166Q96A37 237 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-233ENST00000535896 BACH2Q9BYV9 841 aa8.31□□□□□ -1.08
SYNE1-233ENST00000535896 PPM1GO15355 546 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-233ENST00000535896 VARS2Q5ST30 1063 aaKnown RBP8.3□□□□□ -1.08
SYNE1-233ENST00000535896 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-233ENST00000535896 KDM2AQ9Y2K7 1162 aa8.3□□□□□ -1.08
SYNE1-233ENST00000535896 NRXN1Q9ULB1 1477 aa8.3□□□□□ -1.08
SYNE1-233ENST00000535896 ADGRB3O60242 1522 aa8.3□□□□□ -1.08
SYNE1-233ENST00000535896 UGGT1Q9NYU2 1555 aa8.29□□□□□ -1.08
SYNE1-233ENST00000535896 ZNF521Q96K83 1311 aa8.29□□□□□ -1.08
SYNE1-233ENST00000535896 UBR1Q8IWV7 1749 aa8.29□□□□□ -1.08
SYNE1-233ENST00000535896 PDE4AP27815 886 aa8.28□□□□□ -1.08
SYNE1-233ENST00000535896 IDI1Q13907 227 aa8.28□□□□□ -1.08
SYNE1-233ENST00000535896 CENPQQ7L2Z9 268 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-233ENST00000535896 THEMISQ8N1K5 641 aaPredicted RBP8.28□□□□□ -1.08
SYNE1-233ENST00000535896 EXOC6Q8TAG9 804 aa8.28□□□□□ -1.08
SYNE1-233ENST00000535896 NKTRP30414 1462 aaKnown RBP8.27□□□□□ -1.09
SYNE1-233ENST00000535896 KDM2BQ8NHM5 1336 aa8.27□□□□□ -1.09
SYNE1-233ENST00000535896 PTGER2P43116 358 aa8.27□□□□□ -1.09
SYNE1-233ENST00000535896 PPLO60437 1756 aa8.27□□□□□ -1.09
SYNE1-233ENST00000535896 TMEM131LA2VDJ0 1609 aa8.27□□□□□ -1.09
SYNE1-233ENST00000535896 SLIT1O75093 1534 aa8.26□□□□□ -1.09
SYNE1-233ENST00000535896 AAMPQ13685 434 aa8.26□□□□□ -1.09
SYNE1-233ENST00000535896 NBPF1Q3BBV0 1214 aa8.26□□□□□ -1.09
SYNE1-233ENST00000535896 MICALL2Q8IY33 904 aa8.26□□□□□ -1.09
SYNE1-233ENST00000535896 ZNF687Q8N1G0 1237 aa8.26□□□□□ -1.09
SYNE1-233ENST00000535896 PANK3Q9H999 370 aa8.26□□□□□ -1.09
SYNE1-233ENST00000535896 KNSTRNQ9Y448 316 aa8.26□□□□□ -1.09
SYNE1-233ENST00000535896 ARHGAP23Q9P227 1491 aa8.26□□□□□ -1.09
SYNE1-233ENST00000535896 WDR43Q15061 677 aaKnown RBP eCLIP8.25□□□□□ -1.09
SYNE1-233ENST00000535896 TMEM92Q6UXU6 159 aa8.25□□□□□ -1.09
SYNE1-233ENST00000535896 SHPRHQ149N8 1683 aa8.25□□□□□ -1.09
SYNE1-233ENST00000535896 TMEM2Q9UHN6 1383 aa8.25□□□□□ -1.09
SYNE1-233ENST00000535896 HDGFP51858 240 aaKnown RBP8.24□□□□□ -1.09
SYNE1-233ENST00000535896 POLR3AO14802 1390 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-233ENST00000535896 QRICH2Q9H0J4 1663 aa8.24□□□□□ -1.09
SYNE1-233ENST00000535896 PPP2R1AP30153 589 aa8.23□□□□□ -1.09
SYNE1-233ENST00000535896 HSPA2P54652 639 aa8.23□□□□□ -1.09
SYNE1-233ENST00000535896 DUSP27Q5VZP5 1158 aa8.23□□□□□ -1.09
SYNE1-233ENST00000535896 TRMT2AQ8IZ69 625 aaKnown RBP8.23□□□□□ -1.09
SYNE1-233ENST00000535896 MYO5BQ9ULV0 1848 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms