RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 PRKAR2BP31323 418 aa21.76■■□□□ 1.07
SFSWAP-203ENST00000535236 RDXP35241 583 aaKnown RBP21.76■■□□□ 1.07
SFSWAP-203ENST00000535236 TCP11L2Q8N4U5 519 aa21.75■■□□□ 1.07
SFSWAP-203ENST00000535236 FGD5Q6ZNL6 1462 aa21.75■■□□□ 1.07
SFSWAP-203ENST00000535236 ARHGAP5Q13017 1502 aa21.75■■□□□ 1.07
SFSWAP-203ENST00000535236 TXLNAP40222 546 aa21.75■■□□□ 1.07
SFSWAP-203ENST00000535236 CNTLNQ9NXG0 1405 aa21.74■■□□□ 1.07
SFSWAP-203ENST00000535236 CAGE1Q8TC20 777 aa21.74■■□□□ 1.07
SFSWAP-203ENST00000535236 ADAMTS8Q9UP79 889 aa21.74■■□□□ 1.07
SFSWAP-203ENST00000535236 KRT18P05783 430 aaKnown RBP21.73■■□□□ 1.07
SFSWAP-203ENST00000535236 CFAP70Q5T0N1 1121 aa21.73■■□□□ 1.07
SFSWAP-203ENST00000535236 CABP4P57796 275 aa21.73■■□□□ 1.07
SFSWAP-203ENST00000535236 TWISTNBQ3B726 338 aaPredicted RBP21.73■■□□□ 1.07
SFSWAP-203ENST00000535236 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.73■■□□□ 1.075e-11■□□□□ 9.7
SFSWAP-203ENST00000535236 SMARCA4P51532 1647 aa21.72■■□□□ 1.07
SFSWAP-203ENST00000535236 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.72■■□□□ 1.07
SFSWAP-203ENST00000535236 PAF1Q8N7H5 531 aa21.72■■□□□ 1.07
SFSWAP-203ENST00000535236 PRAM1Q96QH2 718 aa21.72■■□□□ 1.07
SFSWAP-203ENST00000535236 GNAI2P04899 355 aa21.72■■□□□ 1.07
SFSWAP-203ENST00000535236 ATP2B2Q01814 1243 aa21.71■■□□□ 1.07
SFSWAP-203ENST00000535236 MAGEC2Q9UBF1 373 aaPredicted RBP21.71■■□□□ 1.07
SFSWAP-203ENST00000535236 HSP90B2PQ58FF3 399 aa21.71■■□□□ 1.07
SFSWAP-203ENST00000535236 TOM1L2Q6ZVM7 507 aa21.71■■□□□ 1.07
SFSWAP-203ENST00000535236 KINO60870 393 aaKnown RBP21.71■■□□□ 1.07
SFSWAP-203ENST00000535236 RAD54L2Q9Y4B4 1467 aa21.71■■□□□ 1.07
SFSWAP-203ENST00000535236 AFAP1Q8N556 730 aa21.7■■□□□ 1.06
SFSWAP-203ENST00000535236 NUTM2BA6NNL0 878 aaPredicted RBP21.7■■□□□ 1.06
SFSWAP-203ENST00000535236 NUTM2EB1AL46 878 aaPredicted RBP21.7■■□□□ 1.06
SFSWAP-203ENST00000535236 NUTM2AQ8IVF1 878 aaPredicted RBP21.7■■□□□ 1.06
SFSWAP-203ENST00000535236 EXOSC9Q06265 439 aaKnown RBP21.7■■□□□ 1.06
SFSWAP-203ENST00000535236 PDCP20941 246 aa21.7■■□□□ 1.06
SFSWAP-203ENST00000535236 BRD4O60885 1362 aaPredicted RBP21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 IGF1RP08069 1367 aa21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 FILIP1LQ4L180 1135 aa21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 HDGFL1Q5TGJ6 251 aa21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 THEMISQ8N1K5 641 aaPredicted RBP21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 TTLL5Q6EMB2 1281 aa21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 DDX54Q8TDD1 881 aaKnown RBP21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 ZNF396Q96N95 335 aaPredicted RBP21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 SYCP1Q15431 976 aa21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 LETM1O95202 739 aaPredicted RBP21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 MYO6Q9UM54 1294 aa21.69■■□□□ 1.06
SFSWAP-203ENST00000535236 PNISRQ8TF01 805 aaKnown RBP21.68■■□□□ 1.06
SFSWAP-203ENST00000535236 FAM13BQ9NYF5 915 aa21.68■■□□□ 1.06
SFSWAP-203ENST00000535236 NEK4P51957 841 aa21.68■■□□□ 1.06
SFSWAP-203ENST00000535236 NACAP1Q9BZK3 213 aa21.68■■□□□ 1.06
SFSWAP-203ENST00000535236 SPG7Q9UQ90 795 aa21.68■■□□□ 1.06
SFSWAP-203ENST00000535236 SMARCE1Q969G3 411 aa21.67■■□□□ 1.06
SFSWAP-203ENST00000535236 MCM2P49736 904 aa21.67■■□□□ 1.06
SFSWAP-203ENST00000535236 SMC2O95347 1197 aa21.66■■□□□ 1.06
SFSWAP-203ENST00000535236 STK38Q15208 465 aa21.66■■□□□ 1.06
SFSWAP-203ENST00000535236 PPP2R1AP30153 589 aa21.66■■□□□ 1.06
SFSWAP-203ENST00000535236 SLC4A2P04920 1241 aa21.66■■□□□ 1.06
SFSWAP-203ENST00000535236 CCDC39Q9UFE4 941 aa21.66■■□□□ 1.06
SFSWAP-203ENST00000535236 PIP4K2AP48426 406 aaPredicted RBP21.66■■□□□ 1.06
SFSWAP-203ENST00000535236 ZNF530Q6P9A1 599 aaPredicted RBP21.65■■□□□ 1.06
SFSWAP-203ENST00000535236 C1orf115Q9H7X2 142 aa21.65■■□□□ 1.06
SFSWAP-203ENST00000535236 FAM43AQ8N2R8 423 aa21.65■■□□□ 1.06
SFSWAP-203ENST00000535236 GCC1Q96CN9 775 aa21.65■■□□□ 1.06
SFSWAP-203ENST00000535236 TRIM5Q9C035 493 aa21.65■■□□□ 1.06
SFSWAP-203ENST00000535236 ZNF692Q9BU19 519 aaPredicted RBP21.65■■□□□ 1.06
SFSWAP-203ENST00000535236 FANCIQ9NVI1 1328 aa21.65■■□□□ 1.06
SFSWAP-203ENST00000535236 SULT6B1Q6IMI4 303 aa21.65■■□□□ 1.06
SFSWAP-203ENST00000535236 RNF214Q8ND24 703 aa21.64■■□□□ 1.05
SFSWAP-203ENST00000535236 AQRO60306 1485 aaKnown RBP eCLIP21.64■■□□□ 1.054e-7■■■■□ 23.4
SFSWAP-203ENST00000535236 MPHOSPH8Q99549 860 aa21.64■■□□□ 1.05
SFSWAP-203ENST00000535236 CCT4P50991 539 aaKnown RBP21.63■■□□□ 1.05
SFSWAP-203ENST00000535236 CDK19Q9BWU1 502 aa21.63■■□□□ 1.05
SFSWAP-203ENST00000535236 RBM5P52756 815 aaKnown RBP eCLIP21.63■■□□□ 1.05
SFSWAP-203ENST00000535236 BRPF1P55201 1214 aaPredicted RBP21.63■■□□□ 1.05
SFSWAP-203ENST00000535236 FMNL2Q96PY5 1086 aa21.63■■□□□ 1.05
SFSWAP-203ENST00000535236 TRIM22Q8IYM9 498 aa21.63■■□□□ 1.05
SFSWAP-203ENST00000535236 SIL1Q9H173 461 aa21.63■■□□□ 1.05
SFSWAP-203ENST00000535236 SCAPERQ9BY12 1400 aa21.63■■□□□ 1.05
SFSWAP-203ENST00000535236 ERCC4Q92889 916 aaPredicted RBP21.63■■□□□ 1.05
SFSWAP-203ENST00000535236 JMYQ8N9B5 988 aa21.62■■□□□ 1.05
SFSWAP-203ENST00000535236 STK11IPQ8N1F8 1099 aa21.62■■□□□ 1.05
SFSWAP-203ENST00000535236 NOB1Q9ULX3 412 aaKnown RBP21.62■■□□□ 1.05
SFSWAP-203ENST00000535236 MBD3O95983 291 aa21.62■■□□□ 1.05
SFSWAP-203ENST00000535236 NASPP49321 788 aaPredicted RBP21.62■■□□□ 1.05
SFSWAP-203ENST00000535236 SRCIN1Q9C0H9 1055 aa21.62■■□□□ 1.05
SFSWAP-203ENST00000535236 RABEP1Q15276 862 aa21.62■■□□□ 1.05
SFSWAP-203ENST00000535236 BCL11BQ9C0K0 894 aaPredicted RBP21.61■■□□□ 1.05
SFSWAP-203ENST00000535236 CCDC69A6NI79 296 aa21.61■■□□□ 1.05
SFSWAP-203ENST00000535236 CCDC57Q2TAC2 916 aa21.61■■□□□ 1.05
SFSWAP-203ENST00000535236 ZSCAN25Q6NSZ9 544 aa21.61■■□□□ 1.05
SFSWAP-203ENST00000535236 CEBPZQ03701 1054 aaKnown RBP21.61■■□□□ 1.05
SFSWAP-203ENST00000535236 PDZRN3Q9UPQ7 1066 aa21.61■■□□□ 1.05
SFSWAP-203ENST00000535236 SOGA3Q5TF21 947 aa21.61■■□□□ 1.05
SFSWAP-203ENST00000535236 MYL6BP14649 208 aa21.6■■□□□ 1.05
SFSWAP-203ENST00000535236 CYP46A1Q9Y6A2 500 aa21.6■■□□□ 1.05
SFSWAP-203ENST00000535236 DCTN1Q14203 1278 aa21.6■■□□□ 1.05
SFSWAP-203ENST00000535236 PDCL3Q9H2J4 239 aa21.6■■□□□ 1.05
SFSWAP-203ENST00000535236 LRRCC1Q9C099 1032 aa21.6■■□□□ 1.05
SFSWAP-203ENST00000535236 CABP1Q9NZU7 370 aa21.59■■□□□ 1.05
SFSWAP-203ENST00000535236 NCOA2Q15596 1464 aa21.59■■□□□ 1.05
SFSWAP-203ENST00000535236 SYNJ2O15056 1496 aa21.59■■□□□ 1.05
SFSWAP-203ENST00000535236 CCP110O43303 1012 aa21.58■■□□□ 1.05
SFSWAP-203ENST00000535236 ANKRD1Q15327 319 aa21.58■■□□□ 1.05
SFSWAP-203ENST00000535236 CAVIN1Q6NZI2 390 aaKnown RBP21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms