RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 NR6A1Q15406 480 aa6.53□□□□□ -1.36
CSMD3-210ENST00000534172 CCDC24Q8N4L8 307 aa6.53□□□□□ -1.36
CSMD3-210ENST00000534172 ABL2P42684 1182 aa6.53□□□□□ -1.36
CSMD3-210ENST00000534172 RPIAP49247 311 aa6.53□□□□□ -1.36
CSMD3-210ENST00000534172 PTK2Q05397 1052 aa6.53□□□□□ -1.36
CSMD3-210ENST00000534172 PDXDC2PQ6P474 469 aa6.53□□□□□ -1.36
CSMD3-210ENST00000534172 GDPD2Q9HCC8 539 aa6.53□□□□□ -1.36
CSMD3-210ENST00000534172 NKX2-3Q8TAU0 364 aa6.52□□□□□ -1.37
CSMD3-210ENST00000534172 HMX1Q9NP08 348 aaPredicted RBP6.52□□□□□ -1.37
CSMD3-210ENST00000534172 PRDM9Q9NQV7 894 aa6.52□□□□□ -1.37
CSMD3-210ENST00000534172 CLUAP1Q96AJ1 413 aa6.52□□□□□ -1.37
CSMD3-210ENST00000534172 FNBP4Q8N3X1 1017 aaPredicted RBP6.51□□□□□ -1.37
CSMD3-210ENST00000534172 TBC1D2BQ9UPU7 963 aa6.51□□□□□ -1.37
CSMD3-210ENST00000534172 FCF1Q9Y324 198 aaKnown RBP6.51□□□□□ -1.37
CSMD3-210ENST00000534172 UNC93B1Q9H1C4 597 aa6.51□□□□□ -1.37
CSMD3-210ENST00000534172 EIF4G2P78344 907 aaKnown RBP eCLIP6.5□□□□□ -1.37
CSMD3-210ENST00000534172 NR1H3Q13133 447 aa6.5□□□□□ -1.37
CSMD3-210ENST00000534172 TRIM52Q96A61 297 aa6.5□□□□□ -1.37
CSMD3-210ENST00000534172 POM121Q96HA1 1249 aa6.5□□□□□ -1.37
CSMD3-210ENST00000534172 PLA2G2EQ9NZK7 142 aa6.5□□□□□ -1.37
CSMD3-210ENST00000534172 MAP10Q9P2G4 905 aa6.5□□□□□ -1.37
CSMD3-210ENST00000534172 ZBBXA8MT70 800 aa6.49□□□□□ -1.37
CSMD3-210ENST00000534172 RNF223E7ERA6 249 aa6.49□□□□□ -1.37
CSMD3-210ENST00000534172 CD2BP2O95400 341 aaKnown RBP6.49□□□□□ -1.37
CSMD3-210ENST00000534172 PPP1R18Q6NYC8 613 aa6.49□□□□□ -1.37
CSMD3-210ENST00000534172 WNT7BP56706 349 aa6.48□□□□□ -1.37
CSMD3-210ENST00000534172 BPHLQ86WA6 291 aaPredicted RBP6.48□□□□□ -1.37
CSMD3-210ENST00000534172 CCDC125Q86Z20 511 aa6.48□□□□□ -1.37
CSMD3-210ENST00000534172 CDV3Q9UKY7 258 aaKnown RBP6.47□□□□□ -1.37
CSMD3-210ENST00000534172 A0A0G2JS52 829 aa6.47□□□□□ -1.37
CSMD3-210ENST00000534172 RGS20O76081 388 aa6.47□□□□□ -1.37
CSMD3-210ENST00000534172 IRF5Q13568 498 aa6.47□□□□□ -1.37
CSMD3-210ENST00000534172 EPS8L1Q8TE68 723 aa6.47□□□□□ -1.37
CSMD3-210ENST00000534172 ARHGAP9Q9BRR9 750 aa6.47□□□□□ -1.37
CSMD3-210ENST00000534172 SERPINA10Q9UK55 444 aa6.46□□□□□ -1.38
CSMD3-210ENST00000534172 SEMA3FQ13275 785 aa6.45□□□□□ -1.38
CSMD3-210ENST00000534172 ZBTB33Q86T24 672 aa6.45□□□□□ -1.38
CSMD3-210ENST00000534172 PTCRAQ6ISU1 281 aaPredicted RBP6.45□□□□□ -1.38
CSMD3-210ENST00000534172 ZNF511Q8NB15 262 aa6.45□□□□□ -1.38
CSMD3-210ENST00000534172 SH3BP5LQ7L8J4 393 aa6.44□□□□□ -1.38
CSMD3-210ENST00000534172 BAP1Q92560 729 aa6.44□□□□□ -1.38
CSMD3-210ENST00000534172 PPEF1O14829 653 aaPredicted RBP6.44□□□□□ -1.38
CSMD3-210ENST00000534172 VARSP26640 1264 aaKnown RBP6.44□□□□□ -1.38
CSMD3-210ENST00000534172 TRIM32Q13049 653 aa6.43□□□□□ -1.38
CSMD3-210ENST00000534172 AGERQ15109 404 aa6.43□□□□□ -1.38
CSMD3-210ENST00000534172 CCDC97Q96F63 343 aaPredicted RBP6.43□□□□□ -1.38
CSMD3-210ENST00000534172 V9GY48 417 aaPredicted RBP6.43□□□□□ -1.38
CSMD3-210ENST00000534172 SLC19A1P41440 591 aa6.43□□□□□ -1.38
CSMD3-210ENST00000534172 FAM174AQ8TBP5 190 aa6.43□□□□□ -1.38
CSMD3-210ENST00000534172 CALR3Q96L12 384 aaKnown RBP6.43□□□□□ -1.38
CSMD3-210ENST00000534172 GPR37L1O60883 481 aa6.42□□□□□ -1.38
CSMD3-210ENST00000534172 ZNF777Q9ULD5 760 aaPredicted RBP6.42□□□□□ -1.38
CSMD3-210ENST00000534172 FBXO45P0C2W1 286 aa6.42□□□□□ -1.38
CSMD3-210ENST00000534172 VAC14Q08AM6 782 aa6.42□□□□□ -1.38
CSMD3-210ENST00000534172 RNF20Q5VTR2 975 aa6.41□□□□□ -1.38
CSMD3-210ENST00000534172 SH3RF1Q7Z6J0 888 aa6.41□□□□□ -1.38
CSMD3-210ENST00000534172 DZIP3Q86Y13 1208 aaKnown RBP6.41□□□□□ -1.38
CSMD3-210ENST00000534172 TRMT44Q8IYL2 757 aaKnown RBP6.41□□□□□ -1.38
CSMD3-210ENST00000534172 MPNDQ8N594 471 aa6.41□□□□□ -1.38
CSMD3-210ENST00000534172 ALG2Q9H553 416 aa6.41□□□□□ -1.38
CSMD3-210ENST00000534172 SH3BP2P78314 561 aa6.41□□□□□ -1.38
CSMD3-210ENST00000534172 NFATC2IPQ8NCF5 419 aa6.41□□□□□ -1.38
CSMD3-210ENST00000534172 LZTS3O60299 673 aaPredicted RBP6.4□□□□□ -1.38
CSMD3-210ENST00000534172 HDGFL1Q5TGJ6 251 aa6.4□□□□□ -1.38
CSMD3-210ENST00000534172 C1QTNF2Q9BXJ5 285 aa6.4□□□□□ -1.38
CSMD3-210ENST00000534172 LINC01559Q495D7 138 aa6.4□□□□□ -1.39
CSMD3-210ENST00000534172 ADAM32Q8TC27 787 aa6.4□□□□□ -1.39
CSMD3-210ENST00000534172 GLMNQ92990 594 aa6.4□□□□□ -1.39
CSMD3-210ENST00000534172 SLC10A4Q96EP9 437 aa6.4□□□□□ -1.39
CSMD3-210ENST00000534172 PCDHB9Q9Y5E1 797 aa6.4□□□□□ -1.39
CSMD3-210ENST00000534172 NBPF20Q3BBV1 942 aa6.39□□□□□ -1.39
CSMD3-210ENST00000534172 MAP4K5Q9Y4K4 846 aa6.39□□□□□ -1.39
CSMD3-210ENST00000534172 ZNF598Q86UK7 904 aaKnown RBP6.39□□□□□ -1.39
CSMD3-210ENST00000534172 SEPT12Q8IYM1 358 aa6.39□□□□□ -1.39
CSMD3-210ENST00000534172 WNT7AO00755 349 aa6.38□□□□□ -1.39
CSMD3-210ENST00000534172 PLA2G2CQ5R387 149 aa6.38□□□□□ -1.39
CSMD3-210ENST00000534172 LIAT1Q6ZQX7 453 aa6.38□□□□□ -1.39
CSMD3-210ENST00000534172 EHBP1Q8NDI1 1231 aa6.38□□□□□ -1.39
CSMD3-210ENST00000534172 FOXJ1Q92949 421 aa6.38□□□□□ -1.39
CSMD3-210ENST00000534172 SPRYD7Q5W111 196 aa6.38□□□□□ -1.39
CSMD3-210ENST00000534172 MAGEB6P1A0A0J9YX57 407 aa6.37□□□□□ -1.39
CSMD3-210ENST00000534172 POM121CA8CG34 1229 aa6.37□□□□□ -1.39
CSMD3-210ENST00000534172 SLFNL1Q499Z3 407 aa6.37□□□□□ -1.39
CSMD3-210ENST00000534172 RC3H1Q5TC82 1133 aaKnown RBP6.37□□□□□ -1.39
CSMD3-210ENST00000534172 MAP7D1Q3KQU3 841 aa6.37□□□□□ -1.39
CSMD3-210ENST00000534172 ERFEQ4G0M1 354 aa6.37□□□□□ -1.39
CSMD3-210ENST00000534172 CARD14Q9BXL6 1004 aa6.36□□□□□ -1.39
CSMD3-210ENST00000534172 CEP126Q9P2H0 1117 aa6.36□□□□□ -1.39
CSMD3-210ENST00000534172 OCSTAMPQ9BR26 566 aa6.36□□□□□ -1.39
CSMD3-210ENST00000534172 PRKD2Q9BZL6 878 aa6.36□□□□□ -1.39
CSMD3-210ENST00000534172 SKOR1P84550 965 aa6.35□□□□□ -1.39
CSMD3-210ENST00000534172 DHX9Q08211 1270 aaKnown RBP6.35□□□□□ -1.39
CSMD3-210ENST00000534172 ZNF697Q5TEC3 545 aa6.35□□□□□ -1.39
CSMD3-210ENST00000534172 SIRT1Q96EB6 747 aa6.35□□□□□ -1.39
CSMD3-210ENST00000534172 CDK15Q96Q40 435 aa6.35□□□□□ -1.39
CSMD3-210ENST00000534172 PPP1R15AO75807 674 aaPredicted RBP6.35□□□□□ -1.39
CSMD3-210ENST00000534172 PODXL2Q9NZ53 605 aa6.35□□□□□ -1.39
CSMD3-210ENST00000534172 ARID3CA6NKF2 412 aa6.34□□□□□ -1.39
CSMD3-210ENST00000534172 PDE4CQ08493 712 aa6.34□□□□□ -1.39
CSMD3-210ENST00000534172 CCDC82Q8N4S0 544 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms