RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 TRPM3Q9HCF6 1732 aaPredicted RBP16.96■□□□□ 0.31
CMTM1-216ENST00000533078 PSDA5PKW4 1024 aaPredicted RBP16.96■□□□□ 0.31
CMTM1-216ENST00000533078 ALS2Q96Q42 1657 aa16.95■□□□□ 0.3
CMTM1-216ENST00000533078 WASLO00401 505 aaPredicted RBP16.95■□□□□ 0.3
CMTM1-216ENST00000533078 STAC3Q96MF2 364 aa16.95■□□□□ 0.3
CMTM1-216ENST00000533078 SPATA31A5Q5VU36 1347 aa16.94■□□□□ 0.3
CMTM1-216ENST00000533078 SPATA31A7Q8IWB4 1347 aa16.94■□□□□ 0.3
CMTM1-216ENST00000533078 HRCP23327 699 aa16.93■□□□□ 0.3
CMTM1-216ENST00000533078 EN1Q05925 392 aaPredicted RBP16.93■□□□□ 0.3
CMTM1-216ENST00000533078 KDM2AQ9Y2K7 1162 aa16.93■□□□□ 0.3
CMTM1-216ENST00000533078 ADGRB1O14514 1584 aa16.93■□□□□ 0.3
CMTM1-216ENST00000533078 DCAF11Q8TEB1 546 aa16.92■□□□□ 0.3
CMTM1-216ENST00000533078 ITSN1Q15811 1721 aa16.92■□□□□ 0.3
CMTM1-216ENST00000533078 PRR36Q9H6K5 1346 aa16.91■□□□□ 0.3
CMTM1-216ENST00000533078 STRN4Q9NRL3 753 aa16.9■□□□□ 0.3
CMTM1-216ENST00000533078 RAB3GAP2Q9H2M9 1393 aa16.89■□□□□ 0.3
CMTM1-216ENST00000533078 ATP7BP35670 1465 aa16.89■□□□□ 0.29
CMTM1-216ENST00000533078 R3HDM1Q15032 1099 aaKnown RBP16.89■□□□□ 0.29
CMTM1-216ENST00000533078 FAM182BQ5T319 152 aa16.89■□□□□ 0.29
CMTM1-216ENST00000533078 FAM196AQ6ZSG2 479 aa16.89■□□□□ 0.29
CMTM1-216ENST00000533078 KIAA0232Q92628 1395 aa16.89■□□□□ 0.29
CMTM1-216ENST00000533078 DISP2A7MBM2 1401 aa16.88■□□□□ 0.29
CMTM1-216ENST00000533078 EVA1CP58658 441 aa16.88■□□□□ 0.29
CMTM1-216ENST00000533078 SPATA31A1Q5TZJ5 1347 aa16.88■□□□□ 0.29
CMTM1-216ENST00000533078 THSD7AQ9UPZ6 1657 aa16.88■□□□□ 0.29
CMTM1-216ENST00000533078 PDE3BQ13370 1112 aa16.87■□□□□ 0.29
CMTM1-216ENST00000533078 NUDT16Q96DE0 195 aaKnown RBP16.87■□□□□ 0.29
CMTM1-216ENST00000533078 PARD3Q8TEW0 1356 aa16.87■□□□□ 0.29
CMTM1-216ENST00000533078 CRYBG1Q9Y4K1 1723 aa16.86■□□□□ 0.29
CMTM1-216ENST00000533078 TRIM37O94972 964 aa16.85■□□□□ 0.29
CMTM1-216ENST00000533078 ZC3H6P61129 1189 aaKnown RBP16.85■□□□□ 0.29
CMTM1-216ENST00000533078 CHRNA2Q15822 529 aa16.85■□□□□ 0.29
CMTM1-216ENST00000533078 EZH2Q15910 746 aaKnown RBP16.85■□□□□ 0.29
CMTM1-216ENST00000533078 USP35Q9P2H5 1018 aa16.85■□□□□ 0.29
CMTM1-216ENST00000533078 TNS1Q9HBL0 1735 aaKnown RBP16.84■□□□□ 0.29
CMTM1-216ENST00000533078 APBA3O96018 575 aa16.84■□□□□ 0.29
CMTM1-216ENST00000533078 PHRF1Q9P1Y6 1649 aaKnown RBP16.84■□□□□ 0.29
CMTM1-216ENST00000533078 NBPF8Q3BBV2 869 aa16.83■□□□□ 0.28
CMTM1-216ENST00000533078 NBPF14Q5TI25 921 aa16.83■□□□□ 0.28
CMTM1-216ENST00000533078 ARHGEF28Q8N1W1 1705 aaKnown RBP16.83■□□□□ 0.28
CMTM1-216ENST00000533078 NUTM2GQ5VZR2 741 aa16.82■□□□□ 0.28
CMTM1-216ENST00000533078 CDK19Q9BWU1 502 aa16.82■□□□□ 0.28
CMTM1-216ENST00000533078 CCDC61Q9Y6R9 512 aa16.82■□□□□ 0.28
CMTM1-216ENST00000533078 BARGINQ6ZT62 677 aa16.81■□□□□ 0.28
CMTM1-216ENST00000533078 ABTB2Q8N961 1025 aa16.81■□□□□ 0.28
CMTM1-216ENST00000533078 CAMKK2Q96RR4 588 aa16.81■□□□□ 0.28
CMTM1-216ENST00000533078 SSH2Q76I76 1423 aa16.8■□□□□ 0.28
CMTM1-216ENST00000533078 ACEP12821 1306 aa16.8■□□□□ 0.28
CMTM1-216ENST00000533078 C11orf95C9JLR9 678 aaPredicted RBP16.8■□□□□ 0.28
CMTM1-216ENST00000533078 POLR3AO14802 1390 aaPredicted RBP16.79■□□□□ 0.28
CMTM1-216ENST00000533078 TCP11L2Q8N4U5 519 aa16.79■□□□□ 0.28
CMTM1-216ENST00000533078 THRAP3Q9Y2W1 955 aaKnown RBP16.79■□□□□ 0.28
CMTM1-216ENST00000533078 DCAF8L1A6NGE4 600 aa16.78■□□□□ 0.28
CMTM1-216ENST00000533078 NLRP13Q86W25 1043 aa16.78■□□□□ 0.28
CMTM1-216ENST00000533078 CPDO75976 1380 aa16.77■□□□□ 0.27
CMTM1-216ENST00000533078 PLEKHG3A1L390 1219 aa16.76■□□□□ 0.27
CMTM1-216ENST00000533078 SRPK2P78362 688 aaKnown RBP16.76■□□□□ 0.27
CMTM1-216ENST00000533078 LARP1Q6PKG0 1096 aaKnown RBP16.76■□□□□ 0.27
CMTM1-216ENST00000533078 PPP1R1BQ9UD71 204 aaPredicted RBP16.76■□□□□ 0.27
CMTM1-216ENST00000533078 NRKQ7Z2Y5 1582 aa16.76■□□□□ 0.27
CMTM1-216ENST00000533078 TOPAZ1Q8N9V7 1692 aa16.75■□□□□ 0.27
CMTM1-216ENST00000533078 KIAA1210Q9ULL0 1709 aa16.73■□□□□ 0.27
CMTM1-216ENST00000533078 RREB1Q92766 1687 aa16.73■□□□□ 0.27
CMTM1-216ENST00000533078 CAMTA1Q9Y6Y1 1673 aa16.73■□□□□ 0.27
CMTM1-216ENST00000533078 ZBTB7CA1YPR0 619 aa16.73■□□□□ 0.27
CMTM1-216ENST00000533078 GCP02774 474 aa16.73■□□□□ 0.27
CMTM1-216ENST00000533078 BRD4O60885 1362 aaPredicted RBP16.73■□□□□ 0.27
CMTM1-216ENST00000533078 USP19O94966 1318 aa16.72■□□□□ 0.27
CMTM1-216ENST00000533078 PPIP5K1Q6PFW1 1433 aa16.72■□□□□ 0.27
CMTM1-216ENST00000533078 SPON1Q9HCB6 807 aa16.72■□□□□ 0.27
CMTM1-216ENST00000533078 LMO7Q8WWI1 1683 aa16.71■□□□□ 0.27
CMTM1-216ENST00000533078 CENPJQ9HC77 1338 aaPredicted RBP16.7■□□□□ 0.26
CMTM1-216ENST00000533078 OVOS2A0A0G2JMS6 1433 aa16.7■□□□□ 0.26
CMTM1-216ENST00000533078 OVOS2A0A0J9YW53 1432 aa16.7■□□□□ 0.26
CMTM1-216ENST00000533078 OVOS2Q6IE36 1432 aa16.7■□□□□ 0.26
CMTM1-216ENST00000533078 NUP188Q5SRE5 1749 aa16.7■□□□□ 0.26
CMTM1-216ENST00000533078 COL5A2P05997 1499 aaPredicted RBP16.7■□□□□ 0.26
CMTM1-216ENST00000533078 YY1P25490 414 aa16.7■□□□□ 0.26
CMTM1-216ENST00000533078 CRB1P82279 1406 aa16.7■□□□□ 0.26
CMTM1-216ENST00000533078 PARP4Q9UKK3 1724 aaKnown RBP16.69■□□□□ 0.26
CMTM1-216ENST00000533078 NLRP6P59044 892 aa16.68■□□□□ 0.26
CMTM1-216ENST00000533078 DDB1Q16531 1140 aa16.68■□□□□ 0.26
CMTM1-216ENST00000533078 KCNQ2O43526 872 aa16.67■□□□□ 0.26
CMTM1-216ENST00000533078 TOM1L2Q6ZVM7 507 aa16.67■□□□□ 0.26
CMTM1-216ENST00000533078 CABP2Q9NPB3 220 aa16.67■□□□□ 0.26
CMTM1-216ENST00000533078 AATKQ6ZMQ8 1374 aa16.65■□□□□ 0.26
CMTM1-216ENST00000533078 NINLQ9Y2I6 1382 aa16.65■□□□□ 0.26
CMTM1-216ENST00000533078 NBPF1Q3BBV0 1214 aa16.65■□□□□ 0.26
CMTM1-216ENST00000533078 CDCA7Q9BWT1 371 aaPredicted RBP16.65■□□□□ 0.26
CMTM1-216ENST00000533078 PLSCR1O15162 318 aa16.64■□□□□ 0.25
CMTM1-216ENST00000533078 CABP1Q9NZU7 370 aa16.64■□□□□ 0.25
CMTM1-216ENST00000533078 RGPD3A6NKT7 1758 aaPredicted RBP16.64■□□□□ 0.25
CMTM1-216ENST00000533078 RGPD4Q7Z3J3 1758 aa16.64■□□□□ 0.25
CMTM1-216ENST00000533078 USP6P35125 1406 aa16.63■□□□□ 0.25
CMTM1-216ENST00000533078 QRICH2Q9H0J4 1663 aa16.63■□□□□ 0.25
CMTM1-216ENST00000533078 CSB-PGBD3P0DP91 1061 aa16.62■□□□□ 0.25
CMTM1-216ENST00000533078 KCNH5Q8NCM2 988 aa16.62■□□□□ 0.25
CMTM1-216ENST00000533078 BCL11BQ9C0K0 894 aaPredicted RBP16.62■□□□□ 0.25
CMTM1-216ENST00000533078 EVC2Q86UK5 1308 aa16.62■□□□□ 0.25
CMTM1-216ENST00000533078 LRRC37A3O60309 1634 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms