RNA–Protein interactions for RNA: ENST00000532285.1

CAPN1-222, Transcript of calpain 1, human

TSL 4

Gene CAPN1, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-222	ENST00000532285	SBNO2	Q9Y2G9	1366 aa		32.58	■■■□□ 2.81
CAPN1-222	ENST00000532285	PLEKHG5	O94827	1062 aa		32.58	■■■□□ 2.81
CAPN1-222	ENST00000532285	CDK12	Q9NYV4	1490 aa	Predicted RBP	32.55	■■■□□ 2.8
CAPN1-222	ENST00000532285	RBM6	P78332	1123 aa	Known RBP	32.55	■■■□□ 2.8
CAPN1-222	ENST00000532285	CABP1	Q9NZU7	370 aa		32.55	■■■□□ 2.8
CAPN1-222	ENST00000532285	TRPC5	Q9UL62	973 aa	Predicted RBP	32.55	■■■□□ 2.8
CAPN1-222	ENST00000532285	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	32.54	■■■□□ 2.8
CAPN1-222	ENST00000532285	CRYBG1	Q9Y4K1	1723 aa		32.54	■■■□□ 2.8
CAPN1-222	ENST00000532285	BCL9L	Q86UU0	1499 aa		32.54	■■■□□ 2.8
CAPN1-222	ENST00000532285	SLIT2	O94813	1529 aa		32.51	■■■□□ 2.8
CAPN1-222	ENST00000532285	ATRN	O75882	1429 aa		32.51	■■■□□ 2.79
CAPN1-222	ENST00000532285	BRD4	O60885	1362 aa	Predicted RBP	32.5	■■■□□ 2.79
CAPN1-222	ENST00000532285	CCER1	Q8TC90	406 aa	Predicted RBP	32.5	■■■□□ 2.79
CAPN1-222	ENST00000532285	NWD2	Q9ULI1	1742 aa		32.5	■■■□□ 2.79
CAPN1-222	ENST00000532285	PLCH1	Q4KWH8	1693 aa		32.5	■■■□□ 2.79
CAPN1-222	ENST00000532285	ATAD2	Q6PL18	1390 aa		32.49	■■■□□ 2.79
CAPN1-222	ENST00000532285	UNC5CL	Q8IV45	518 aa		32.47	■■■□□ 2.79
CAPN1-222	ENST00000532285	AKAP12	Q02952	1782 aa		32.46	■■■□□ 2.79
CAPN1-222	ENST00000532285	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.45	■■■□□ 2.79
CAPN1-222	ENST00000532285	ABTB2	Q8N961	1025 aa		32.45	■■■□□ 2.79
CAPN1-222	ENST00000532285	USP6	P35125	1406 aa		32.44	■■■□□ 2.78
CAPN1-222	ENST00000532285	FAM83G	A6ND36	823 aa		32.44	■■■□□ 2.78
CAPN1-222	ENST00000532285	COL14A1	Q05707	1796 aa	Known RBP	32.43	■■■□□ 2.78
CAPN1-222	ENST00000532285	NUTM2G	Q5VZR2	741 aa		32.43	■■■□□ 2.78
CAPN1-222	ENST00000532285	ST20-MTHFS	A0A0A6YYL1	179 aa		32.42	■■■□□ 2.78
CAPN1-222	ENST00000532285	ZNF692	Q9BU19	519 aa	Predicted RBP	32.42	■■■□□ 2.78
CAPN1-222	ENST00000532285	SLC24A1	O60721	1099 aa		32.41	■■■□□ 2.78
CAPN1-222	ENST00000532285	RGS12	O14924	1447 aa		32.41	■■■□□ 2.78
CAPN1-222	ENST00000532285	GJD4	Q96KN9	370 aa	Predicted RBP	32.39	■■■□□ 2.78
CAPN1-222	ENST00000532285	NLRP13	Q86W25	1043 aa		32.38	■■■□□ 2.77
CAPN1-222	ENST00000532285	PUS7	Q96PZ0	661 aa	Known RBP	32.38	■■■□□ 2.77
CAPN1-222	ENST00000532285	TESK2	Q96S53	571 aa		32.38	■■■□□ 2.77
CAPN1-222	ENST00000532285	SSH2	Q76I76	1423 aa		32.36	■■■□□ 2.77
CAPN1-222	ENST00000532285	NRAP	Q86VF7	1730 aa		32.36	■■■□□ 2.77
CAPN1-222	ENST00000532285	CPSF1	Q10570	1443 aa	Known RBP	32.35	■■■□□ 2.77
CAPN1-222	ENST00000532285	USP47	Q96K76	1375 aa		32.35	■■■□□ 2.77
CAPN1-222	ENST00000532285	PRDM11	Q9NQV5	511 aa		32.35	■■■□□ 2.77
CAPN1-222	ENST00000532285	USP19	O94966	1318 aa		32.34	■■■□□ 2.77
CAPN1-222	ENST00000532285	VPS72	Q15906	364 aa		32.34	■■■□□ 2.77
CAPN1-222	ENST00000532285	BTG4	Q9NY30	223 aa		32.34	■■■□□ 2.77
CAPN1-222	ENST00000532285	MON2	Q7Z3U7	1717 aa		32.34	■■■□□ 2.77
CAPN1-222	ENST00000532285	KIAA0232	Q92628	1395 aa		32.32	■■■□□ 2.77
CAPN1-222	ENST00000532285	GLI3	P10071	1580 aa		32.32	■■■□□ 2.77
CAPN1-222	ENST00000532285	NRK	Q7Z2Y5	1582 aa		32.32	■■■□□ 2.77
CAPN1-222	ENST00000532285	PIK3C2A	O00443	1686 aa		32.32	■■■□□ 2.76
CAPN1-222	ENST00000532285	KTN1	Q86UP2	1357 aa	Known RBP	32.32	■■■□□ 2.76
CAPN1-222	ENST00000532285	ZC3H6	P61129	1189 aa	Known RBP	32.31	■■■□□ 2.76
CAPN1-222	ENST00000532285	TTC21B	Q7Z4L5	1316 aa		32.3	■■■□□ 2.76
CAPN1-222	ENST00000532285	NLRP6	P59044	892 aa		32.3	■■■□□ 2.76
CAPN1-222	ENST00000532285	TMC1	Q8TDI8	760 aa		32.3	■■■□□ 2.76
CAPN1-222	ENST00000532285	TTC21A	Q8NDW8	1320 aa		32.28	■■■□□ 2.76
CAPN1-222	ENST00000532285	GC	P02774	474 aa		32.28	■■■□□ 2.76
CAPN1-222	ENST00000532285	CCDC9	Q9Y3X0	531 aa	Known RBP	32.28	■■■□□ 2.76
CAPN1-222	ENST00000532285	SLC12A5	Q9H2X9	1139 aa		32.26	■■■□□ 2.75
CAPN1-222	ENST00000532285	CD163L1	Q9NR16	1453 aa		32.26	■■■□□ 2.75
CAPN1-222	ENST00000532285	CPD	O75976	1380 aa		32.25	■■■□□ 2.75
CAPN1-222	ENST00000532285	CHRNA2	Q15822	529 aa		32.25	■■■□□ 2.75
CAPN1-222	ENST00000532285	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	32.25	■■■□□ 2.75
CAPN1-222	ENST00000532285	TMF1	P82094	1093 aa		32.24	■■■□□ 2.75
CAPN1-222	ENST00000532285	TERF2IP	Q9NYB0	399 aa		32.24	■■■□□ 2.75
CAPN1-222	ENST00000532285	SLIT3	O75094	1523 aa		32.24	■■■□□ 2.75
CAPN1-222	ENST00000532285	NINL	Q9Y2I6	1382 aa		32.23	■■■□□ 2.75
CAPN1-222	ENST00000532285	UPF1	Q92900	1129 aa	Known RBP eCLIP	32.22	■■■□□ 2.75
CAPN1-222	ENST00000532285	BRWD3	Q6RI45	1802 aa		32.19	■■■□□ 2.74
CAPN1-222	ENST00000532285	LMO7	Q8WWI1	1683 aa		32.19	■■■□□ 2.74
CAPN1-222	ENST00000532285	ONECUT3	O60422	494 aa	Predicted RBP	32.18	■■■□□ 2.74
CAPN1-222	ENST00000532285	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	32.17	■■■□□ 2.74
CAPN1-222	ENST00000532285		A0A1W2PP64	1363 aa		32.17	■■■□□ 2.74
CAPN1-222	ENST00000532285	EDC4	Q6P2E9	1401 aa	Known RBP	32.17	■■■□□ 2.74
CAPN1-222	ENST00000532285	CDCA8	Q53HL2	280 aa		32.16	■■■□□ 2.74
CAPN1-222	ENST00000532285	SPATA31A5	Q5VU36	1347 aa		32.16	■■■□□ 2.74
CAPN1-222	ENST00000532285	SPATA31A7	Q8IWB4	1347 aa		32.16	■■■□□ 2.74
CAPN1-222	ENST00000532285	USP54	Q70EL1	1684 aa		32.15	■■■□□ 2.74
CAPN1-222	ENST00000532285	CAMTA1	Q9Y6Y1	1673 aa		32.15	■■■□□ 2.74
CAPN1-222	ENST00000532285	SEPT12	Q8IYM1	358 aa		32.15	■■■□□ 2.74
CAPN1-222	ENST00000532285	KCNH5	Q8NCM2	988 aa		32.15	■■■□□ 2.74
CAPN1-222	ENST00000532285	EVA1C	P58658	441 aa		32.14	■■■□□ 2.74
CAPN1-222	ENST00000532285	STRN4	Q9NRL3	753 aa		32.14	■■■□□ 2.74
CAPN1-222	ENST00000532285	USP31	Q70CQ4	1352 aa		32.12	■■■□□ 2.73
CAPN1-222	ENST00000532285	FAM98C	Q17RN3	349 aa	Known RBP	32.11	■■■□□ 2.73
CAPN1-222	ENST00000532285	AATK	Q6ZMQ8	1374 aa		32.1	■■■□□ 2.73
CAPN1-222	ENST00000532285	COL18A1	P39060	1754 aa		32.09	■■■□□ 2.73
CAPN1-222	ENST00000532285	ZBTB7C	A1YPR0	619 aa		32.09	■■■□□ 2.73
CAPN1-222	ENST00000532285	NME9	Q86XW9	330 aa		32.09	■■■□□ 2.73
CAPN1-222	ENST00000532285	EP400	Q96L91	3159 aa		32.09	■■■□□ 2.73
CAPN1-222	ENST00000532285	SPATA31A1	Q5TZJ5	1347 aa		32.08	■■■□□ 2.73
CAPN1-222	ENST00000532285	ZRANB1	Q9UGI0	708 aa		32.08	■■■□□ 2.73
CAPN1-222	ENST00000532285	NFAT5	O94916	1531 aa		32.07	■■■□□ 2.72
CAPN1-222	ENST00000532285	ANKRD36B	Q8N2N9	1353 aa		32.07	■■■□□ 2.72
CAPN1-222	ENST00000532285		A0A0G2JS52	829 aa		32.06	■■■□□ 2.72
CAPN1-222	ENST00000532285	EIF4G2	P78344	907 aa	Known RBP eCLIP	32.06	■■■□□ 2.72
CAPN1-222	ENST00000532285	MYT1	Q01538	1121 aa		32.06	■■■□□ 2.72
CAPN1-222	ENST00000532285	ARHGEF25	Q86VW2	580 aa		32.06	■■■□□ 2.72
CAPN1-222	ENST00000532285	COL5A2	P05997	1499 aa	Predicted RBP	32.05	■■■□□ 2.72
CAPN1-222	ENST00000532285	SOX12	O15370	315 aa		32.05	■■■□□ 2.72
CAPN1-222	ENST00000532285	RGPD5	Q99666	1765 aa		32.04	■■■□□ 2.72
CAPN1-222	ENST00000532285	LARP1	Q6PKG0	1096 aa	Known RBP	32.04	■■■□□ 2.72
CAPN1-222	ENST00000532285	THSD7A	Q9UPZ6	1657 aa		32.03	■■■□□ 2.72
CAPN1-222	ENST00000532285	KRT27	Q7Z3Y8	459 aa		32.03	■■■□□ 2.72
CAPN1-222	ENST00000532285	MYOM1	P52179	1685 aa		32.01	■■■□□ 2.71

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms