RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 LIAT1Q6ZQX7 453 aa9.72□□□□□ -0.85
CD44-230ENST00000528922 A6NJR5 290 aa9.71□□□□□ -0.86
CD44-230ENST00000528922 RAD21O60216 631 aa9.71□□□□□ -0.86
CD44-230ENST00000528922 ABL2P42684 1182 aa9.7□□□□□ -0.86
CD44-230ENST00000528922 IRF5Q13568 498 aa9.7□□□□□ -0.86
CD44-230ENST00000528922 BAP1Q92560 729 aa9.7□□□□□ -0.86
CD44-230ENST00000528922 PRM3Q9NNZ6 103 aa9.7□□□□□ -0.86
CD44-230ENST00000528922 ERICH6Q7L0X2 663 aa9.69□□□□□ -0.86
CD44-230ENST00000528922 ARMC2Q8NEN0 867 aa9.69□□□□□ -0.86
CD44-230ENST00000528922 ZBTB24O43167 697 aaPredicted RBP9.68□□□□□ -0.86
CD44-230ENST00000528922 RPIAP49247 311 aa9.68□□□□□ -0.86
CD44-230ENST00000528922 TRIM32Q13049 653 aa9.68□□□□□ -0.86
CD44-230ENST00000528922 FNBP4Q8N3X1 1017 aaPredicted RBP9.68□□□□□ -0.86
CD44-230ENST00000528922 SLC19A1P41440 591 aa9.67□□□□□ -0.86
CD44-230ENST00000528922 LINC01559Q495D7 138 aa9.67□□□□□ -0.86
CD44-230ENST00000528922 PNMA1Q8ND90 353 aa9.66□□□□□ -0.86
CD44-230ENST00000528922 ZC3H4Q9UPT8 1303 aaKnown RBP9.66□□□□□ -0.86
CD44-230ENST00000528922 SH3BP2P78314 561 aa9.65□□□□□ -0.86
CD44-230ENST00000528922 SKOR1P84550 965 aa9.65□□□□□ -0.86
CD44-230ENST00000528922 NBPF14Q5TI25 921 aa9.65□□□□□ -0.86
CD44-230ENST00000528922 PDXDC2PQ6P474 469 aa9.65□□□□□ -0.86
CD44-230ENST00000528922 PROSER2Q86WR7 435 aaPredicted RBP9.65□□□□□ -0.86
CD44-230ENST00000528922 ZNF511Q8NB15 262 aa9.65□□□□□ -0.86
CD44-230ENST00000528922 OCSTAMPQ9BR26 566 aa9.65□□□□□ -0.86
CD44-230ENST00000528922 GPKOWQ92917 476 aaPredicted RBP eCLIP9.64□□□□□ -0.87
CD44-230ENST00000528922 FOXJ1Q92949 421 aa9.64□□□□□ -0.87
CD44-230ENST00000528922 TRAK2O60296 914 aa9.63□□□□□ -0.87
CD44-230ENST00000528922 CD2BP2O95400 341 aaKnown RBP9.63□□□□□ -0.87
CD44-230ENST00000528922 SH3BP5LQ7L8J4 393 aa9.63□□□□□ -0.87
CD44-230ENST00000528922 PRKD2Q9BZL6 878 aa9.63□□□□□ -0.87
CD44-230ENST00000528922 FBXO45P0C2W1 286 aa9.62□□□□□ -0.87
CD44-230ENST00000528922 C4orf48Q5BLP8 95 aa9.62□□□□□ -0.87
CD44-230ENST00000528922 SPRYD7Q5W111 196 aa9.62□□□□□ -0.87
CD44-230ENST00000528922 ZBBXA8MT70 800 aa9.61□□□□□ -0.87
CD44-230ENST00000528922 WNT7BP56706 349 aa9.61□□□□□ -0.87
CD44-230ENST00000528922 VAC14Q08AM6 782 aa9.61□□□□□ -0.87
CD44-230ENST00000528922 SH3RF1Q7Z6J0 888 aa9.61□□□□□ -0.87
CD44-230ENST00000528922 GPSM3Q9Y4H4 160 aa9.61□□□□□ -0.87
CD44-230ENST00000528922 PTK2Q05397 1052 aa9.6□□□□□ -0.87
CD44-230ENST00000528922 NR1H3Q13133 447 aa9.6□□□□□ -0.87
CD44-230ENST00000528922 ZNF330Q9Y3S2 320 aaPredicted RBP9.6□□□□□ -0.87
CD44-230ENST00000528922 POM121CA8CG34 1229 aa9.59□□□□□ -0.87
CD44-230ENST00000528922 WASHC4Q2M389 1173 aa9.59□□□□□ -0.87
CD44-230ENST00000528922 ARHGAP9Q9BRR9 750 aa9.59□□□□□ -0.87
CD44-230ENST00000528922 V9GY48 417 aaPredicted RBP9.59□□□□□ -0.87
CD44-230ENST00000528922 AGERQ15109 404 aa9.58□□□□□ -0.88
CD44-230ENST00000528922 RC3H1Q5TC82 1133 aaKnown RBP9.58□□□□□ -0.88
CD44-230ENST00000528922 BPHLQ86WA6 291 aaPredicted RBP9.58□□□□□ -0.88
CD44-230ENST00000528922 WWC1Q8IX03 1113 aa9.58□□□□□ -0.88
CD44-230ENST00000528922 MAGEB6P1A0A0J9YX57 407 aa9.57□□□□□ -0.88
CD44-230ENST00000528922 ZNF598Q86UK7 904 aaKnown RBP9.57□□□□□ -0.88
CD44-230ENST00000528922 ADAM32Q8TC27 787 aa9.57□□□□□ -0.88
CD44-230ENST00000528922 CARD14Q9BXL6 1004 aa9.57□□□□□ -0.88
CD44-230ENST00000528922 ZNF777Q9ULD5 760 aaPredicted RBP9.57□□□□□ -0.88
CD44-230ENST00000528922 ZNF697Q5TEC3 545 aa9.56□□□□□ -0.88
CD44-230ENST00000528922 ERFEQ4G0M1 354 aa9.56□□□□□ -0.88
CD44-230ENST00000528922 ZBTB33Q86T24 672 aa9.56□□□□□ -0.88
CD44-230ENST00000528922 C1QTNF2Q9BXJ5 285 aa9.56□□□□□ -0.88
CD44-230ENST00000528922 SUPT5HO00267 1087 aaKnown RBP9.55□□□□□ -0.88
CD44-230ENST00000528922 PKD2L1Q9P0L9 805 aa9.55□□□□□ -0.88
CD44-230ENST00000528922 WNT7AO00755 349 aa9.54□□□□□ -0.88
CD44-230ENST00000528922 VARSP26640 1264 aaKnown RBP9.54□□□□□ -0.88
CD44-230ENST00000528922 EHBP1Q8NDI1 1231 aa9.54□□□□□ -0.88
CD44-230ENST00000528922 ADAMTS19Q8TE59 1207 aa9.54□□□□□ -0.88
CD44-230ENST00000528922 ARID3CA6NKF2 412 aa9.53□□□□□ -0.88
CD44-230ENST00000528922 SIAH2O43255 324 aa9.53□□□□□ -0.88
CD44-230ENST00000528922 RGS20O76081 388 aa9.53□□□□□ -0.88
CD44-230ENST00000528922 FOXC1Q12948 553 aa9.53□□□□□ -0.88
CD44-230ENST00000528922 MRGPRX2Q96LB1 330 aa9.53□□□□□ -0.88
CD44-230ENST00000528922 ALG2Q9H553 416 aa9.53□□□□□ -0.88
CD44-230ENST00000528922 PCDHB9Q9Y5E1 797 aa9.52□□□□□ -0.89
CD44-230ENST00000528922 GDF9O60383 454 aa9.51□□□□□ -0.89
CD44-230ENST00000528922 EIF4G2P78344 907 aaKnown RBP eCLIP9.51□□□□□ -0.89
CD44-230ENST00000528922 HDGFL1Q5TGJ6 251 aa9.51□□□□□ -0.89
CD44-230ENST00000528922 TRIM67Q6ZTA4 783 aa9.51□□□□□ -0.89
CD44-230ENST00000528922 TRMT44Q8IYL2 757 aaKnown RBP9.51□□□□□ -0.89
CD44-230ENST00000528922 FAM174AQ8TBP5 190 aa9.51□□□□□ -0.89
CD44-230ENST00000528922 C1orf115Q9H7X2 142 aa9.51□□□□□ -0.89
CD44-230ENST00000528922 DZIP3Q86Y13 1208 aaKnown RBP9.5□□□□□ -0.89
CD44-230ENST00000528922 SOX11P35716 441 aa9.49□□□□□ -0.89
CD44-230ENST00000528922 GLMNQ92990 594 aa9.49□□□□□ -0.89
CD44-230ENST00000528922 TNFRSF10AO00220 468 aa9.48□□□□□ -0.89
CD44-230ENST00000528922 SEMA3FQ13275 785 aa9.48□□□□□ -0.89
CD44-230ENST00000528922 TLL2Q9Y6L7 1015 aa9.48□□□□□ -0.89
CD44-230ENST00000528922 SLC10A4Q96EP9 437 aa9.47□□□□□ -0.89
CD44-230ENST00000528922 CDK15Q96Q40 435 aa9.47□□□□□ -0.89
CD44-230ENST00000528922 CEP126Q9P2H0 1117 aa9.47□□□□□ -0.89
CD44-230ENST00000528922 MCCD1P59942 119 aaPredicted RBP9.46□□□□□ -0.9
CD44-230ENST00000528922 ARID5BQ14865 1188 aa9.46□□□□□ -0.9
CD44-230ENST00000528922 MPNDQ8N594 471 aa9.46□□□□□ -0.9
CD44-230ENST00000528922 CALR3Q96L12 384 aaKnown RBP9.46□□□□□ -0.9
CD44-230ENST00000528922 GRM5P41594 1212 aa9.45□□□□□ -0.9
CD44-230ENST00000528922 MAP4K5Q9Y4K4 846 aa9.45□□□□□ -0.9
CD44-230ENST00000528922 GIGYF1O75420 1035 aaPredicted RBP9.44□□□□□ -0.9
CD44-230ENST00000528922 PRR20EP86478 221 aa9.44□□□□□ -0.9
CD44-230ENST00000528922 PRR20CP86479 221 aa9.44□□□□□ -0.9
CD44-230ENST00000528922 PRR20DP86480 221 aa9.44□□□□□ -0.9
CD44-230ENST00000528922 PRR20BP86481 221 aa9.44□□□□□ -0.9
CD44-230ENST00000528922 PRR20AP86496 221 aa9.44□□□□□ -0.9
CD44-230ENST00000528922 VASH1Q7L8A9 365 aaPredicted RBP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms