RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 MTMR14Q8NCE2 650 aa6.25□□□□□ -1.41
CD44-229ENST00000528672 LRRN4Q8WUT4 740 aa6.25□□□□□ -1.41
CD44-229ENST00000528672 TSC1Q92574 1164 aa6.25□□□□□ -1.41
CD44-229ENST00000528672 ST8SIA5O15466 376 aa6.24□□□□□ -1.41
CD44-229ENST00000528672 PPP2R2DQ66LE6 453 aa6.24□□□□□ -1.41
CD44-229ENST00000528672 PRDM9Q9NQV7 894 aa6.24□□□□□ -1.41
CD44-229ENST00000528672 NUTM2BA6NNL0 878 aaPredicted RBP6.23□□□□□ -1.41
CD44-229ENST00000528672 NUTM2EB1AL46 878 aaPredicted RBP6.23□□□□□ -1.41
CD44-229ENST00000528672 NUTM2DQ5VT03 806 aaPredicted RBP6.23□□□□□ -1.41
CD44-229ENST00000528672 NUTM2AQ8IVF1 878 aaPredicted RBP6.23□□□□□ -1.41
CD44-229ENST00000528672 PRR7Q8TB68 274 aa6.23□□□□□ -1.41
CD44-229ENST00000528672 FCF1Q9Y324 198 aaKnown RBP6.23□□□□□ -1.41
CD44-229ENST00000528672 GPR37L1O60883 481 aa6.22□□□□□ -1.41
CD44-229ENST00000528672 PLA2G2CQ5R387 149 aa6.22□□□□□ -1.41
CD44-229ENST00000528672 CCNYL3P0C7X3 344 aa6.21□□□□□ -1.42
CD44-229ENST00000528672 CRIPAKQ8N1N5 446 aa6.21□□□□□ -1.42
CD44-229ENST00000528672 HELBQ8NG08 1087 aaPredicted RBP6.21□□□□□ -1.42
CD44-229ENST00000528672 ZMYND15Q9H091 742 aa6.21□□□□□ -1.42
CD44-229ENST00000528672 PKD2L1Q9P0L9 805 aa6.21□□□□□ -1.42
CD44-229ENST00000528672 SOCS7O14512 581 aa6.2□□□□□ -1.42
CD44-229ENST00000528672 CD2BP2O95400 341 aaKnown RBP6.2□□□□□ -1.42
CD44-229ENST00000528672 USP17L8P0C7I0 530 aa6.2□□□□□ -1.42
CD44-229ENST00000528672 LYPD8Q6UX82 237 aa6.2□□□□□ -1.42
CD44-229ENST00000528672 NUDT12Q9BQG2 462 aa6.2□□□□□ -1.42
CD44-229ENST00000528672 GDPD2Q9HCC8 539 aa6.2□□□□□ -1.42
CD44-229ENST00000528672 TBC1D2BQ9UPU7 963 aa6.2□□□□□ -1.42
CD44-229ENST00000528672 COG6Q9Y2V7 657 aa6.2□□□□□ -1.42
CD44-229ENST00000528672 ZBTB24O43167 697 aaPredicted RBP6.19□□□□□ -1.42
CD44-229ENST00000528672 WFS1O76024 890 aa6.19□□□□□ -1.42
CD44-229ENST00000528672 GJD4Q96KN9 370 aaPredicted RBP6.19□□□□□ -1.42
CD44-229ENST00000528672 ARID3AQ99856 593 aa6.19□□□□□ -1.42
CD44-229ENST00000528672 TRIM34Q9BYJ4 488 aa6.19□□□□□ -1.42
CD44-229ENST00000528672 EVA1BQ9NVM1 165 aa6.19□□□□□ -1.42
CD44-229ENST00000528672 DACH1Q9UI36 760 aa6.19□□□□□ -1.42
CD44-229ENST00000528672 POM121CA8CG34 1229 aa6.18□□□□□ -1.42
CD44-229ENST00000528672 AVPP01185 164 aa6.18□□□□□ -1.42
CD44-229ENST00000528672 WNT7BP56706 349 aa6.18□□□□□ -1.42
CD44-229ENST00000528672 FOXC1Q12948 553 aa6.18□□□□□ -1.42
CD44-229ENST00000528672 NR6A1Q15406 480 aa6.18□□□□□ -1.42
CD44-229ENST00000528672 ZNF777Q9ULD5 760 aaPredicted RBP6.18□□□□□ -1.42
CD44-229ENST00000528672 UBTFP17480 764 aaKnown RBP6.17□□□□□ -1.42
CD44-229ENST00000528672 KCNH2Q12809 1159 aa6.17□□□□□ -1.42
CD44-229ENST00000528672 TRIM32Q13049 653 aa6.17□□□□□ -1.42
CD44-229ENST00000528672 TOR4AQ9NXH8 423 aa6.17□□□□□ -1.42
CD44-229ENST00000528672 STK17AQ9UEE5 414 aa6.17□□□□□ -1.42
CD44-229ENST00000528672 C11orf95C9JLR9 678 aaPredicted RBP6.16□□□□□ -1.42
CD44-229ENST00000528672 F12P00748 615 aaPredicted RBP6.16□□□□□ -1.42
CD44-229ENST00000528672 TMEM259Q4ZIN3 620 aa6.16□□□□□ -1.42
CD44-229ENST00000528672 MAP10Q9P2G4 905 aa6.16□□□□□ -1.42
CD44-229ENST00000528672 GMPR2Q9P2T1 348 aaKnown RBP6.16□□□□□ -1.42
CD44-229ENST00000528672 AXIN1O15169 862 aa6.15□□□□□ -1.42
CD44-229ENST00000528672 WIPF1O43516 503 aa6.15□□□□□ -1.42
CD44-229ENST00000528672 ABL2P42684 1182 aa6.15□□□□□ -1.42
CD44-229ENST00000528672 NFX1Q12986 1120 aaKnown RBP6.15□□□□□ -1.42
CD44-229ENST00000528672 IRF5Q13568 498 aa6.15□□□□□ -1.42
CD44-229ENST00000528672 CTC1Q2NKJ3 1217 aa6.15□□□□□ -1.42
CD44-229ENST00000528672 FNBP4Q8N3X1 1017 aaPredicted RBP6.15□□□□□ -1.42
CD44-229ENST00000528672 ARMC2Q8NEN0 867 aa6.15□□□□□ -1.42
CD44-229ENST00000528672 GPKOWQ92917 476 aaPredicted RBP eCLIP6.15□□□□□ -1.42
CD44-229ENST00000528672 WNT7AO00755 349 aa6.14□□□□□ -1.43
CD44-229ENST00000528672 SMCPP49901 116 aaPredicted RBP6.14□□□□□ -1.43
CD44-229ENST00000528672 ZC3H4Q9UPT8 1303 aaKnown RBP6.14□□□□□ -1.43
CD44-229ENST00000528672 APBB1O00213 710 aa6.13□□□□□ -1.43
CD44-229ENST00000528672 INSM1Q01101 510 aaPredicted RBP6.13□□□□□ -1.43
CD44-229ENST00000528672 PTCRAQ6ISU1 281 aaPredicted RBP6.13□□□□□ -1.43
CD44-229ENST00000528672 CYP4X1Q8N118 509 aa6.13□□□□□ -1.43
CD44-229ENST00000528672 CCDC24Q8N4L8 307 aa6.13□□□□□ -1.43
CD44-229ENST00000528672 BANK1Q8NDB2 785 aa6.13□□□□□ -1.43
CD44-229ENST00000528672 ADAMTS19Q8TE59 1207 aa6.13□□□□□ -1.43
CD44-229ENST00000528672 UNC93B1Q9H1C4 597 aa6.13□□□□□ -1.43
CD44-229ENST00000528672 TRAK2O60296 914 aa6.12□□□□□ -1.43
CD44-229ENST00000528672 FLIIQ13045 1269 aa6.12□□□□□ -1.43
CD44-229ENST00000528672 NBPF14Q5TI25 921 aa6.12□□□□□ -1.43
CD44-229ENST00000528672 PNMA1Q8ND90 353 aa6.12□□□□□ -1.43
CD44-229ENST00000528672 PROSER2Q86WR7 435 aaPredicted RBP6.11□□□□□ -1.43
CD44-229ENST00000528672 MPNDQ8N594 471 aa6.11□□□□□ -1.43
CD44-229ENST00000528672 VAC14Q08AM6 782 aa6.1□□□□□ -1.43
CD44-229ENST00000528672 ZNF511Q8NB15 262 aa6.1□□□□□ -1.43
CD44-229ENST00000528672 CTHP32929 405 aa6.09□□□□□ -1.43
CD44-229ENST00000528672 GPSM3Q9Y4H4 160 aa6.09□□□□□ -1.43
CD44-229ENST00000528672 TTC24A2A3L6 582 aaPredicted RBP6.08□□□□□ -1.44
CD44-229ENST00000528672 A6NJR5 290 aa6.08□□□□□ -1.44
CD44-229ENST00000528672 VARSP26640 1264 aaKnown RBP6.08□□□□□ -1.44
CD44-229ENST00000528672 LCE2CQ5TA81 110 aa6.08□□□□□ -1.44
CD44-229ENST00000528672 CCDC82Q8N4S0 544 aa6.08□□□□□ -1.44
CD44-229ENST00000528672 OCSTAMPQ9BR26 566 aa6.08□□□□□ -1.44
CD44-229ENST00000528672 SNRPBP14678 240 aaKnown RBP6.07□□□□□ -1.44
CD44-229ENST00000528672 SH3BP2P78314 561 aa6.07□□□□□ -1.44
CD44-229ENST00000528672 SKOR1P84550 965 aa6.07□□□□□ -1.44
CD44-229ENST00000528672 RC3H1Q5TC82 1133 aaKnown RBP6.07□□□□□ -1.44
CD44-229ENST00000528672 BPHLQ86WA6 291 aaPredicted RBP6.07□□□□□ -1.44
CD44-229ENST00000528672 SNIP1Q8TAD8 396 aaKnown RBP6.07□□□□□ -1.44
CD44-229ENST00000528672 ATP13A2Q9NQ11 1180 aa6.07□□□□□ -1.44
CD44-229ENST00000528672 FKBPLQ9UIM3 349 aa6.07□□□□□ -1.44
CD44-229ENST00000528672 TERTO14746 1132 aaKnown RBP6.06□□□□□ -1.44
CD44-229ENST00000528672 LINC01559Q495D7 138 aa6.06□□□□□ -1.44
CD44-229ENST00000528672 PDXDC2PQ6P474 469 aa6.06□□□□□ -1.44
CD44-229ENST00000528672 SH3RF1Q7Z6J0 888 aa6.06□□□□□ -1.44
CD44-229ENST00000528672 MRGPRX2Q96LB1 330 aa6.06□□□□□ -1.44
CD44-229ENST00000528672 ZNF330Q9Y3S2 320 aaPredicted RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms