RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 RAD21O60216 631 aa11.91□□□□□ -0.5
PCF11-202ENST00000528336 ABL2P42684 1182 aa11.91□□□□□ -0.5
PCF11-202ENST00000528336 TRIM32Q13049 653 aa11.91□□□□□ -0.5
PCF11-202ENST00000528336 C14orf37Q86TY3 774 aa11.91□□□□□ -0.5
PCF11-202ENST00000528336 PNMA1Q8ND90 353 aa11.91□□□□□ -0.5
PCF11-202ENST00000528336 ARMC2Q8NEN0 867 aa11.91□□□□□ -0.5
PCF11-202ENST00000528336 CLUAP1Q96AJ1 413 aa11.91□□□□□ -0.5
PCF11-202ENST00000528336 COG6Q9Y2V7 657 aa11.91□□□□□ -0.5
PCF11-202ENST00000528336 CD2BP2O95400 341 aaKnown RBP11.9□□□□□ -0.5
PCF11-202ENST00000528336 RPIAP49247 311 aa11.9□□□□□ -0.5
PCF11-202ENST00000528336 PRKD2Q9BZL6 878 aa11.9□□□□□ -0.5
PCF11-202ENST00000528336 NBPF14Q5TI25 921 aa11.86□□□□□ -0.51
PCF11-202ENST00000528336 SH3BP2P78314 561 aa11.85□□□□□ -0.51
PCF11-202ENST00000528336 AGERQ15109 404 aa11.85□□□□□ -0.51
PCF11-202ENST00000528336 ZNF511Q8NB15 262 aa11.85□□□□□ -0.51
PCF11-202ENST00000528336 GPR37L1O60883 481 aa11.84□□□□□ -0.51
PCF11-202ENST00000528336 SPRYD7Q5W111 196 aa11.84□□□□□ -0.51
PCF11-202ENST00000528336 FOXJ1Q92949 421 aa11.84□□□□□ -0.51
PCF11-202ENST00000528336 SKOR1P84550 965 aa11.83□□□□□ -0.52
PCF11-202ENST00000528336 ZC3H4Q9UPT8 1303 aaKnown RBP11.83□□□□□ -0.52
PCF11-202ENST00000528336 PDXDC2PQ6P474 469 aa11.82□□□□□ -0.52
PCF11-202ENST00000528336 GPKOWQ92917 476 aaPredicted RBP eCLIP11.82□□□□□ -0.52
PCF11-202ENST00000528336 TIMELESSQ9UNS1 1208 aa11.82□□□□□ -0.52
PCF11-202ENST00000528336 V9GY48 417 aaPredicted RBP11.82□□□□□ -0.52
PCF11-202ENST00000528336 PTK2Q05397 1052 aa11.81□□□□□ -0.52
PCF11-202ENST00000528336 IRF5Q13568 498 aa11.81□□□□□ -0.52
PCF11-202ENST00000528336 ZMYND15Q9H091 742 aa11.81□□□□□ -0.52
PCF11-202ENST00000528336 MAGEB6P1A0A0J9YX57 407 aa11.8□□□□□ -0.52
PCF11-202ENST00000528336 WNT7BP56706 349 aa11.8□□□□□ -0.52
PCF11-202ENST00000528336 ZNF697Q5TEC3 545 aa11.8□□□□□ -0.52
PCF11-202ENST00000528336 ZNF598Q86UK7 904 aaKnown RBP11.8□□□□□ -0.52
PCF11-202ENST00000528336 ARHGAP9Q9BRR9 750 aa11.8□□□□□ -0.52
PCF11-202ENST00000528336 CARD14Q9BXL6 1004 aa11.8□□□□□ -0.52
PCF11-202ENST00000528336 FOXC1Q12948 553 aa11.79□□□□□ -0.52
PCF11-202ENST00000528336 RC3H1Q5TC82 1133 aaKnown RBP11.79□□□□□ -0.52
PCF11-202ENST00000528336 BPHLQ86WA6 291 aaPredicted RBP11.79□□□□□ -0.52
PCF11-202ENST00000528336 A6NJR5 290 aa11.78□□□□□ -0.52
PCF11-202ENST00000528336 ZBBXA8MT70 800 aa11.78□□□□□ -0.52
PCF11-202ENST00000528336 SH3BP5LQ7L8J4 393 aa11.78□□□□□ -0.52
PCF11-202ENST00000528336 PROSER2Q86WR7 435 aaPredicted RBP11.78□□□□□ -0.52
PCF11-202ENST00000528336 WWC1Q8IX03 1113 aa11.78□□□□□ -0.52
PCF11-202ENST00000528336 FBXO45P0C2W1 286 aa11.77□□□□□ -0.53
PCF11-202ENST00000528336 VAC14Q08AM6 782 aa11.77□□□□□ -0.53
PCF11-202ENST00000528336 C4orf48Q5BLP8 95 aa11.77□□□□□ -0.53
PCF11-202ENST00000528336 ERICH6Q7L0X2 663 aa11.77□□□□□ -0.53
PCF11-202ENST00000528336 ZBTB33Q86T24 672 aa11.77□□□□□ -0.53
PCF11-202ENST00000528336 EHBP1Q8NDI1 1231 aa11.77□□□□□ -0.53
PCF11-202ENST00000528336 OCSTAMPQ9BR26 566 aa11.76□□□□□ -0.53
PCF11-202ENST00000528336 GPSM3Q9Y4H4 160 aa11.76□□□□□ -0.53
PCF11-202ENST00000528336 NR1H3Q13133 447 aa11.75□□□□□ -0.53
PCF11-202ENST00000528336 ZNF330Q9Y3S2 320 aaPredicted RBP11.75□□□□□ -0.53
PCF11-202ENST00000528336 RGS20O76081 388 aa11.74□□□□□ -0.53
PCF11-202ENST00000528336 SH3RF1Q7Z6J0 888 aa11.74□□□□□ -0.53
PCF11-202ENST00000528336 ADAM32Q8TC27 787 aa11.74□□□□□ -0.53
PCF11-202ENST00000528336 WNT7AO00755 349 aa11.73□□□□□ -0.53
PCF11-202ENST00000528336 VARSP26640 1264 aaKnown RBP11.73□□□□□ -0.53
PCF11-202ENST00000528336 WASHC4Q2M389 1173 aa11.73□□□□□ -0.53
PCF11-202ENST00000528336 FNBP4Q8N3X1 1017 aaPredicted RBP11.73□□□□□ -0.53
PCF11-202ENST00000528336 MRGPRX2Q96LB1 330 aa11.73□□□□□ -0.53
PCF11-202ENST00000528336 PKD2L1Q9P0L9 805 aa11.72□□□□□ -0.53
PCF11-202ENST00000528336 TNFRSF10AO00220 468 aa11.71□□□□□ -0.53
PCF11-202ENST00000528336 TRAK2O60296 914 aa11.71□□□□□ -0.53
PCF11-202ENST00000528336 ERFEQ4G0M1 354 aa11.71□□□□□ -0.53
PCF11-202ENST00000528336 FAM174AQ8TBP5 190 aa11.71□□□□□ -0.53
PCF11-202ENST00000528336 PCDHB9Q9Y5E1 797 aa11.71□□□□□ -0.53
PCF11-202ENST00000528336 POM121CA8CG34 1229 aa11.7□□□□□ -0.54
PCF11-202ENST00000528336 ARID5BQ14865 1188 aa11.69□□□□□ -0.54
PCF11-202ENST00000528336 DZIP3Q86Y13 1208 aaKnown RBP11.69□□□□□ -0.54
PCF11-202ENST00000528336 ZNF777Q9ULD5 760 aaPredicted RBP11.69□□□□□ -0.54
PCF11-202ENST00000528336 C1QTNF2Q9BXJ5 285 aa11.68□□□□□ -0.54
PCF11-202ENST00000528336 GDF9O60383 454 aa11.67□□□□□ -0.54
PCF11-202ENST00000528336 EIF4G2P78344 907 aaKnown RBP eCLIP11.67□□□□□ -0.54
PCF11-202ENST00000528336 TLL2Q9Y6L7 1015 aa11.67□□□□□ -0.54
PCF11-202ENST00000528336 SIAH2O43255 324 aa11.66□□□□□ -0.54
PCF11-202ENST00000528336 TRIM67Q6ZTA4 783 aa11.66□□□□□ -0.54
PCF11-202ENST00000528336 SLC10A4Q96EP9 437 aa11.66□□□□□ -0.54
PCF11-202ENST00000528336 CYP4X1Q8N118 509 aa11.65□□□□□ -0.54
PCF11-202ENST00000528336 TTC24A2A3L6 582 aaPredicted RBP11.64□□□□□ -0.55
PCF11-202ENST00000528336 SEMA3FQ13275 785 aa11.64□□□□□ -0.55
PCF11-202ENST00000528336 TRMT44Q8IYL2 757 aaKnown RBP11.64□□□□□ -0.55
PCF11-202ENST00000528336 PDZRN3Q9UPQ7 1066 aa11.64□□□□□ -0.55
PCF11-202ENST00000528336 ALDH1A1P00352 501 aa11.63□□□□□ -0.55
PCF11-202ENST00000528336 HDGFL1Q5TGJ6 251 aa11.63□□□□□ -0.55
PCF11-202ENST00000528336 VASH1Q7L8A9 365 aaPredicted RBP11.63□□□□□ -0.55
PCF11-202ENST00000528336 SNIP1Q8TAD8 396 aaKnown RBP11.63□□□□□ -0.55
PCF11-202ENST00000528336 SUPT5HO00267 1087 aaKnown RBP11.62□□□□□ -0.55
PCF11-202ENST00000528336 ARID3CA6NKF2 412 aa11.61□□□□□ -0.55
PCF11-202ENST00000528336 SOX11P35716 441 aa11.6□□□□□ -0.55
PCF11-202ENST00000528336 PRR20EP86478 221 aa11.6□□□□□ -0.55
PCF11-202ENST00000528336 PRR20CP86479 221 aa11.6□□□□□ -0.55
PCF11-202ENST00000528336 PRR20DP86480 221 aa11.6□□□□□ -0.55
PCF11-202ENST00000528336 PRR20BP86481 221 aa11.6□□□□□ -0.55
PCF11-202ENST00000528336 PRR20AP86496 221 aa11.6□□□□□ -0.55
PCF11-202ENST00000528336 CDK15Q96Q40 435 aa11.6□□□□□ -0.55
PCF11-202ENST00000528336 ALG2Q9H553 416 aa11.6□□□□□ -0.55
PCF11-202ENST00000528336 J3QL48 77 aa11.59□□□□□ -0.55
PCF11-202ENST00000528336 RAB15P59190 212 aa11.59□□□□□ -0.55
PCF11-202ENST00000528336 MCCD1P59942 119 aaPredicted RBP11.59□□□□□ -0.55
PCF11-202ENST00000528336 ADAMTS19Q8TE59 1207 aa11.59□□□□□ -0.55
PCF11-202ENST00000528336 ZNF592Q92610 1267 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms