RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, human

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD7-208	ENST00000528280	GLI3	P10071	1580 aa		13.66	□□□□□ -0.22
CHD7-208	ENST00000528280	EVC2	Q86UK5	1308 aa		13.66	□□□□□ -0.22
CHD7-208	ENST00000528280	PSD	A5PKW4	1024 aa	Predicted RBP	13.66	□□□□□ -0.22
CHD7-208	ENST00000528280	SLC24A1	O60721	1099 aa		13.66	□□□□□ -0.22
CHD7-208	ENST00000528280	USP32	Q8NFA0	1604 aa		13.65	□□□□□ -0.22
CHD7-208	ENST00000528280	YY1	P25490	414 aa		13.65	□□□□□ -0.22
CHD7-208	ENST00000528280	CABLES1	Q8TDN4	633 aa		13.65	□□□□□ -0.22
CHD7-208	ENST00000528280	ACE	P12821	1306 aa		13.64	□□□□□ -0.23
CHD7-208	ENST00000528280	BRD4	O60885	1362 aa	Predicted RBP	13.64	□□□□□ -0.23
CHD7-208	ENST00000528280	POLR3A	O14802	1390 aa	Predicted RBP	13.63	□□□□□ -0.23
CHD7-208	ENST00000528280	ZNF692	Q9BU19	519 aa	Predicted RBP	13.63	□□□□□ -0.23
CHD7-208	ENST00000528280	CARD11	Q9BXL7	1154 aa		13.63	□□□□□ -0.23
CHD7-208	ENST00000528280	CABP2	Q9NPB3	220 aa		13.63	□□□□□ -0.23
CHD7-208	ENST00000528280	ATP7B	P35670	1465 aa		13.62	□□□□□ -0.23
CHD7-208	ENST00000528280	RALGAPB	Q86X10	1494 aa		13.62	□□□□□ -0.23
CHD7-208	ENST00000528280	ITSN1	Q15811	1721 aa		13.62	□□□□□ -0.23
CHD7-208	ENST00000528280	FAM83G	A6ND36	823 aa		13.62	□□□□□ -0.23
CHD7-208	ENST00000528280	PLEKHG5	O94827	1062 aa		13.62	□□□□□ -0.23
CHD7-208	ENST00000528280	VPS72	Q15906	364 aa		13.62	□□□□□ -0.23
CHD7-208	ENST00000528280	NLRP13	Q86W25	1043 aa		13.61	□□□□□ -0.23
CHD7-208	ENST00000528280	ABTB2	Q8N961	1025 aa		13.61	□□□□□ -0.23
CHD7-208	ENST00000528280	CABP1	Q9NZU7	370 aa		13.61	□□□□□ -0.23
CHD7-208	ENST00000528280	TIMELESS	Q9UNS1	1208 aa		13.61	□□□□□ -0.23
CHD7-208	ENST00000528280	SLIT2	O94813	1529 aa		13.6	□□□□□ -0.23
CHD7-208	ENST00000528280	TRPM1	Q7Z4N2	1603 aa		13.6	□□□□□ -0.23
CHD7-208	ENST00000528280	PPIP5K1	Q6PFW1	1433 aa		13.59	□□□□□ -0.23
CHD7-208	ENST00000528280	IFFO2	Q5TF58	517 aa		13.59	□□□□□ -0.23
CHD7-208	ENST00000528280	CCDC9	Q9Y3X0	531 aa	Known RBP	13.59	□□□□□ -0.23
CHD7-208	ENST00000528280	ONECUT3	O60422	494 aa	Predicted RBP	13.58	□□□□□ -0.24
CHD7-208	ENST00000528280	BAG6	P46379	1132 aa		13.58	□□□□□ -0.24
CHD7-208	ENST00000528280	SEPT12	Q8IYM1	358 aa		13.58	□□□□□ -0.24
CHD7-208	ENST00000528280	PUS7	Q96PZ0	661 aa	Known RBP	13.58	□□□□□ -0.24
CHD7-208	ENST00000528280	PRDM11	Q9NQV5	511 aa		13.58	□□□□□ -0.24
CHD7-208	ENST00000528280	BTG4	Q9NY30	223 aa		13.58	□□□□□ -0.24
CHD7-208	ENST00000528280	CLSPN	Q9HAW4	1339 aa		13.58	□□□□□ -0.24
CHD7-208	ENST00000528280	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.57	□□□□□ -0.24
CHD7-208	ENST00000528280	SBNO2	Q9Y2G9	1366 aa		13.57	□□□□□ -0.24
CHD7-208	ENST00000528280	RGPD1	P0DJD0	1748 aa		13.56	□□□□□ -0.24
CHD7-208	ENST00000528280	ALS2	Q96Q42	1657 aa		13.56	□□□□□ -0.24
CHD7-208	ENST00000528280	EVA1C	P58658	441 aa		13.55	□□□□□ -0.24
CHD7-208	ENST00000528280	R3HDM1	Q15032	1099 aa	Known RBP	13.55	□□□□□ -0.24
CHD7-208	ENST00000528280	KRT27	Q7Z3Y8	459 aa		13.55	□□□□□ -0.24
CHD7-208	ENST00000528280	QRICH2	Q9H0J4	1663 aa		13.55	□□□□□ -0.24
CHD7-208	ENST00000528280	NWD2	Q9ULI1	1742 aa		13.54	□□□□□ -0.24
CHD7-208	ENST00000528280	NLRP6	P59044	892 aa		13.54	□□□□□ -0.24
CHD7-208	ENST00000528280	NUTM2G	Q5VZR2	741 aa		13.54	□□□□□ -0.24
CHD7-208	ENST00000528280	GC	P02774	474 aa		13.53	□□□□□ -0.24
CHD7-208	ENST00000528280	ZC3H6	P61129	1189 aa	Known RBP	13.53	□□□□□ -0.24
CHD7-208	ENST00000528280	PCGF6	Q9BYE7	350 aa		13.53	□□□□□ -0.24
CHD7-208	ENST00000528280	TOPAZ1	Q8N9V7	1692 aa		13.53	□□□□□ -0.24
CHD7-208	ENST00000528280	EN1	Q05925	392 aa	Predicted RBP	13.52	□□□□□ -0.25
CHD7-208	ENST00000528280	TTC21A	Q8NDW8	1320 aa		13.52	□□□□□ -0.25
CHD7-208	ENST00000528280	KIAA0232	Q92628	1395 aa		13.52	□□□□□ -0.25
CHD7-208	ENST00000528280	COL14A1	Q05707	1796 aa	Known RBP	13.52	□□□□□ -0.25
CHD7-208	ENST00000528280	USP6	P35125	1406 aa		13.51	□□□□□ -0.25
CHD7-208	ENST00000528280	USP19	O94966	1318 aa		13.51	□□□□□ -0.25
CHD7-208	ENST00000528280	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.51	□□□□□ -0.25
CHD7-208	ENST00000528280	KCNH5	Q8NCM2	988 aa		13.51	□□□□□ -0.25
CHD7-208	ENST00000528280	PLCH1	Q4KWH8	1693 aa		13.5	□□□□□ -0.25
CHD7-208	ENST00000528280	CPD	O75976	1380 aa		13.5	□□□□□ -0.25
CHD7-208	ENST00000528280	SPATA31A5	Q5VU36	1347 aa		13.5	□□□□□ -0.25
CHD7-208	ENST00000528280	SPATA31A7	Q8IWB4	1347 aa		13.5	□□□□□ -0.25
CHD7-208	ENST00000528280	TMC1	Q8TDI8	760 aa		13.5	□□□□□ -0.25
CHD7-208	ENST00000528280	TERF2IP	Q9NYB0	399 aa		13.5	□□□□□ -0.25
CHD7-208	ENST00000528280	TNS1	Q9HBL0	1735 aa	Known RBP	13.5	□□□□□ -0.25
CHD7-208	ENST00000528280	TTC21B	Q7Z4L5	1316 aa		13.49	□□□□□ -0.25
CHD7-208	ENST00000528280	ST20-MTHFS	A0A0A6YYL1	179 aa		13.49	□□□□□ -0.25
CHD7-208	ENST00000528280		A0A0G2JS52	829 aa		13.49	□□□□□ -0.25
CHD7-208	ENST00000528280	MYT1	Q01538	1121 aa		13.49	□□□□□ -0.25
CHD7-208	ENST00000528280	CHRNA2	Q15822	529 aa		13.49	□□□□□ -0.25
CHD7-208	ENST00000528280	ABCA3	Q99758	1704 aa		13.49	□□□□□ -0.25
CHD7-208	ENST00000528280	KTN1	Q86UP2	1357 aa	Known RBP	13.48	□□□□□ -0.25
CHD7-208	ENST00000528280	FAM98C	Q17RN3	349 aa	Known RBP	13.48	□□□□□ -0.25
CHD7-208	ENST00000528280	CDCA8	Q53HL2	280 aa		13.48	□□□□□ -0.25
CHD7-208	ENST00000528280	STRN4	Q9NRL3	753 aa		13.48	□□□□□ -0.25
CHD7-208	ENST00000528280	CPSF1	Q10570	1443 aa	Known RBP	13.47	□□□□□ -0.25
CHD7-208	ENST00000528280	SSH2	Q76I76	1423 aa		13.47	□□□□□ -0.25
CHD7-208	ENST00000528280	THRAP3	Q9Y2W1	955 aa	Known RBP	13.47	□□□□□ -0.25
CHD7-208	ENST00000528280	DISP2	A7MBM2	1401 aa		13.47	□□□□□ -0.25
CHD7-208	ENST00000528280	SPATA31A1	Q5TZJ5	1347 aa		13.46	□□□□□ -0.25
CHD7-208	ENST00000528280	TMF1	P82094	1093 aa		13.46	□□□□□ -0.25
CHD7-208	ENST00000528280	BARGIN	Q6ZT62	677 aa		13.46	□□□□□ -0.25
CHD7-208	ENST00000528280	NINL	Q9Y2I6	1382 aa		13.45	□□□□□ -0.26
CHD7-208	ENST00000528280	DCAF8L1	A6NGE4	600 aa		13.45	□□□□□ -0.26
CHD7-208	ENST00000528280	TESK2	Q96S53	571 aa		13.45	□□□□□ -0.26
CHD7-208	ENST00000528280	SLC12A5	Q9H2X9	1139 aa		13.45	□□□□□ -0.26
CHD7-208	ENST00000528280	AATK	Q6ZMQ8	1374 aa		13.45	□□□□□ -0.26
CHD7-208	ENST00000528280	CRYBG1	Q9Y4K1	1723 aa		13.44	□□□□□ -0.26
CHD7-208	ENST00000528280	C11orf95	C9JLR9	678 aa	Predicted RBP	13.44	□□□□□ -0.26
CHD7-208	ENST00000528280	TCP11L2	Q8N4U5	519 aa		13.44	□□□□□ -0.26
CHD7-208	ENST00000528280	CCER1	Q8TC90	406 aa	Predicted RBP	13.44	□□□□□ -0.26
CHD7-208	ENST00000528280	CHD4	Q14839	1912 aa		13.43	□□□□□ -0.26
CHD7-208	ENST00000528280	EZH2	Q15910	746 aa	Known RBP	13.43	□□□□□ -0.26
CHD7-208	ENST00000528280	ARHGEF25	Q86VW2	580 aa		13.43	□□□□□ -0.26
CHD7-208	ENST00000528280	CAMTA1	Q9Y6Y1	1673 aa		13.43	□□□□□ -0.26
CHD7-208	ENST00000528280	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.42	□□□□□ -0.26
CHD7-208	ENST00000528280	SENP3-EIF4A1	A0A087X0R7	540 aa		13.42	□□□□□ -0.26
CHD7-208	ENST00000528280	ZBTB7C	A1YPR0	619 aa		13.42	□□□□□ -0.26
CHD7-208	ENST00000528280	PDE3B	Q13370	1112 aa		13.42	□□□□□ -0.26
CHD7-208	ENST00000528280	LARP1	Q6PKG0	1096 aa	Known RBP	13.42	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms