RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 TONSLQ96HA7 1378 aa15.29■□□□□ 0.04
CD44-227ENST00000528086 FAM83GA6ND36 823 aa15.29■□□□□ 0.04
CD44-227ENST00000528086 NRAPQ86VF7 1730 aa15.29■□□□□ 0.04
CD44-227ENST00000528086 PHRF1Q9P1Y6 1649 aaKnown RBP15.28■□□□□ 0.04
CD44-227ENST00000528086 SSH2Q76I76 1423 aa15.28■□□□□ 0.04
CD44-227ENST00000528086 RBM6P78332 1123 aaKnown RBP15.28■□□□□ 0.04
CD44-227ENST00000528086 LMOD2Q6P5Q4 547 aa15.28■□□□□ 0.04
CD44-227ENST00000528086 PCGF6Q9BYE7 350 aa15.28■□□□□ 0.04
CD44-227ENST00000528086 NWD2Q9ULI1 1742 aa15.28■□□□□ 0.04
CD44-227ENST00000528086 SRPK2P78362 688 aaKnown RBP15.26■□□□□ 0.03
CD44-227ENST00000528086 CABP1Q9NZU7 370 aa15.26■□□□□ 0.03
CD44-227ENST00000528086 AKAP12Q02952 1782 aa15.26■□□□□ 0.03
CD44-227ENST00000528086 SBNO2Q9Y2G9 1366 aa15.25■□□□□ 0.03
CD44-227ENST00000528086 EP400Q96L91 3159 aa15.25■□□□□ 0.03
CD44-227ENST00000528086 UNC5CLQ8IV45 518 aa15.25■□□□□ 0.03
CD44-227ENST00000528086 CARD11Q9BXL7 1154 aa15.25■□□□□ 0.03
CD44-227ENST00000528086 TRPC5Q9UL62 973 aaPredicted RBP15.25■□□□□ 0.03
CD44-227ENST00000528086 PAK3O75914 559 aaPredicted RBP15.24■□□□□ 0.03
CD44-227ENST00000528086 NUTM2GQ5VZR2 741 aa15.24■□□□□ 0.03
CD44-227ENST00000528086 USP6P35125 1406 aa15.24■□□□□ 0.03
CD44-227ENST00000528086 BRWD3Q6RI45 1802 aa15.24■□□□□ 0.03
CD44-227ENST00000528086 PIK3C2AO00443 1686 aa15.23■□□□□ 0.03
CD44-227ENST00000528086 CD163L1Q9NR16 1453 aa15.23■□□□□ 0.03
CD44-227ENST00000528086 UPF1Q92900 1129 aaKnown RBP eCLIP15.23■□□□□ 0.03
CD44-227ENST00000528086 TESK2Q96S53 571 aa15.23■□□□□ 0.03
CD44-227ENST00000528086 COL14A1Q05707 1796 aaKnown RBP15.23■□□□□ 0.03
CD44-227ENST00000528086 NRKQ7Z2Y5 1582 aa15.23■□□□□ 0.03
CD44-227ENST00000528086 EVC2Q86UK5 1308 aa15.22■□□□□ 0.03
CD44-227ENST00000528086 GJD4Q96KN9 370 aaPredicted RBP15.22■□□□□ 0.03
CD44-227ENST00000528086 USP19O94966 1318 aa15.21■□□□□ 0.03
CD44-227ENST00000528086 CPSF1Q10570 1443 aaKnown RBP15.21■□□□□ 0.03
CD44-227ENST00000528086 KIAA0232Q92628 1395 aa15.2■□□□□ 0.02
CD44-227ENST00000528086 MON2Q7Z3U7 1717 aa15.2■□□□□ 0.02
CD44-227ENST00000528086 LMO7Q8WWI1 1683 aa15.19■□□□□ 0.02
CD44-227ENST00000528086 VPS72Q15906 364 aa15.19■□□□□ 0.02
CD44-227ENST00000528086 ST20-MTHFSA0A0A6YYL1 179 aa15.18■□□□□ 0.02
CD44-227ENST00000528086 HAP1P54257 671 aaPredicted RBP15.18■□□□□ 0.02
CD44-227ENST00000528086 CHRNA2Q15822 529 aa15.18■□□□□ 0.02
CD44-227ENST00000528086 CAMTA1Q9Y6Y1 1673 aa15.18■□□□□ 0.02
CD44-227ENST00000528086 SLIT3O75094 1523 aa15.17■□□□□ 0.02
CD44-227ENST00000528086 COL18A1P39060 1754 aa15.17■□□□□ 0.02
CD44-227ENST00000528086 ONECUT3O60422 494 aaPredicted RBP15.17■□□□□ 0.02
CD44-227ENST00000528086 ABTB2Q8N961 1025 aa15.17■□□□□ 0.02
CD44-227ENST00000528086 BTG4Q9NY30 223 aa15.17■□□□□ 0.02
CD44-227ENST00000528086 CLSPNQ9HAW4 1339 aa15.17■□□□□ 0.02
CD44-227ENST00000528086 BRD4O60885 1362 aaPredicted RBP15.16■□□□□ 0.02
CD44-227ENST00000528086 ZC3H6P61129 1189 aaKnown RBP15.16■□□□□ 0.02
CD44-227ENST00000528086 TTC21BQ7Z4L5 1316 aa15.16■□□□□ 0.02
CD44-227ENST00000528086 CPDO75976 1380 aa15.15■□□□□ 0.02
CD44-227ENST00000528086 ATAD2Q6PL18 1390 aa15.15■□□□□ 0.02
CD44-227ENST00000528086 SLC12A5Q9H2X9 1139 aa15.15■□□□□ 0.02
CD44-227ENST00000528086 ZRANB1Q9UGI0 708 aa15.15■□□□□ 0.02
CD44-227ENST00000528086 GCP02774 474 aa15.14■□□□□ 0.01
CD44-227ENST00000528086 PRDM11Q9NQV5 511 aa15.14■□□□□ 0.01
CD44-227ENST00000528086 SPATA31A5Q5VU36 1347 aa15.13■□□□□ 0.01
CD44-227ENST00000528086 SPATA31A7Q8IWB4 1347 aa15.13■□□□□ 0.01
CD44-227ENST00000528086 USP54Q70EL1 1684 aa15.12■□□□□ 0.01
CD44-227ENST00000528086 THSD7AQ9UPZ6 1657 aa15.12■□□□□ 0.01
CD44-227ENST00000528086 USP47Q96K76 1375 aa15.12■□□□□ 0.01
CD44-227ENST00000528086 RGPD5Q99666 1765 aa15.12■□□□□ 0.01
CD44-227ENST00000528086 SEPT12Q8IYM1 358 aa15.12■□□□□ 0.01
CD44-227ENST00000528086 NFAT5O94916 1531 aa15.12■□□□□ 0.01
CD44-227ENST00000528086 NLRP6P59044 892 aa15.11■□□□□ 0.01
CD44-227ENST00000528086 NLRP13Q86W25 1043 aa15.11■□□□□ 0.01
CD44-227ENST00000528086 ZNF692Q9BU19 519 aaPredicted RBP15.11■□□□□ 0.01
CD44-227ENST00000528086 KTN1Q86UP2 1357 aaKnown RBP15.11■□□□□ 0.01
CD44-227ENST00000528086 PUS7Q96PZ0 661 aaKnown RBP15.1■□□□□ 0.01
CD44-227ENST00000528086 TIMELESSQ9UNS1 1208 aa15.1■□□□□ 0.01
CD44-227ENST00000528086 A0A1W2PP64 1363 aa15.1■□□□□ 0.01
CD44-227ENST00000528086 FAM98CQ17RN3 349 aaKnown RBP15.09■□□□□ 0.01
CD44-227ENST00000528086 AXIN2Q9Y2T1 843 aa15.09■□□□□ 0.01
CD44-227ENST00000528086 SPATA31A1Q5TZJ5 1347 aa15.09■□□□□ 0.01
CD44-227ENST00000528086 COL5A2P05997 1499 aaPredicted RBP15.08■□□□□ 0.01
CD44-227ENST00000528086 NME9Q86XW9 330 aa15.08■□□□□ 0
CD44-227ENST00000528086 TTC21AQ8NDW8 1320 aa15.08■□□□□ 0
CD44-227ENST00000528086 USP31Q70CQ4 1352 aa15.08■□□□□ 0
CD44-227ENST00000528086 LARP1Q6PKG0 1096 aaKnown RBP15.07■□□□□ 0
CD44-227ENST00000528086 CCDC9Q9Y3X0 531 aaKnown RBP15.07■□□□□ 0
CD44-227ENST00000528086 MYOM1P52179 1685 aa15.06■□□□□ 0
CD44-227ENST00000528086 ARHGEF25Q86VW2 580 aa15.06■□□□□ 0
CD44-227ENST00000528086 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.06■□□□□ 0
CD44-227ENST00000528086 TMC1Q8TDI8 760 aa15.06■□□□□ 0
CD44-227ENST00000528086 STRN4Q9NRL3 753 aa15.06■□□□□ 0
CD44-227ENST00000528086 AATKQ6ZMQ8 1374 aa15.06■□□□□ 0
CD44-227ENST00000528086 EDC4Q6P2E9 1401 aaKnown RBP15.05■□□□□ -0
CD44-227ENST00000528086 OVOS2A0A0J9YW53 1432 aa15.04■□□□□ -0
CD44-227ENST00000528086 OVOS2Q6IE36 1432 aa15.04■□□□□ -0
CD44-227ENST00000528086 FAM182BQ5T319 152 aa15.04■□□□□ -0
CD44-227ENST00000528086 CCER1Q8TC90 406 aaPredicted RBP15.04■□□□□ -0
CD44-227ENST00000528086 LTN1O94822 1766 aa15.03■□□□□ -0
CD44-227ENST00000528086 SOX12O15370 315 aa15.02■□□□□ -0
CD44-227ENST00000528086 KRT27Q7Z3Y8 459 aa15.02■□□□□ -0
CD44-227ENST00000528086 WNK3Q9BYP7 1800 aa15.01□□□□□ -0.01
CD44-227ENST00000528086 NINLQ9Y2I6 1382 aa15□□□□□ -0.01
CD44-227ENST00000528086 FBLN1P23142 703 aa15□□□□□ -0.01
CD44-227ENST00000528086 BARGINQ6ZT62 677 aa15□□□□□ -0.01
CD44-227ENST00000528086 USP35Q9P2H5 1018 aa15□□□□□ -0.01
CD44-227ENST00000528086 PARP4Q9UKK3 1724 aaKnown RBP15□□□□□ -0.01
CD44-227ENST00000528086 ANKRD36BQ8N2N9 1353 aa14.99□□□□□ -0.01
CD44-227ENST00000528086 ZBTB7CA1YPR0 619 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms