RNA–Protein interactions for RNA: ENST00000523555.5

PABPC1-222, Transcript of poly(A) binding protein cytoplasmic 1, human

TSL 3

Gene PABPC1, Length 522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PABPC1-222	ENST00000523555	SLIT2	O94813	1529 aa		13.57	□□□□□ -0.24
PABPC1-222	ENST00000523555	NWD2	Q9ULI1	1742 aa		13.56	□□□□□ -0.24
PABPC1-222	ENST00000523555	PAK3	O75914	559 aa	Predicted RBP	13.56	□□□□□ -0.24
PABPC1-222	ENST00000523555	QTRT2	Q9H974	415 aa	Known RBP	13.56	□□□□□ -0.24
PABPC1-222	ENST00000523555	USP21	Q9UK80	565 aa		13.56	□□□□□ -0.24
PABPC1-222	ENST00000523555	EVC2	Q86UK5	1308 aa		13.56	□□□□□ -0.24
PABPC1-222	ENST00000523555	RGS12	O14924	1447 aa		13.56	□□□□□ -0.24
PABPC1-222	ENST00000523555	ATRN	O75882	1429 aa		13.56	□□□□□ -0.24
PABPC1-222	ENST00000523555	NRK	Q7Z2Y5	1582 aa		13.55	□□□□□ -0.24
PABPC1-222	ENST00000523555	NUTM2G	Q5VZR2	741 aa		13.55	□□□□□ -0.24
PABPC1-222	ENST00000523555	CABP1	Q9NZU7	370 aa		13.55	□□□□□ -0.24
PABPC1-222	ENST00000523555	PIK3C2A	O00443	1686 aa		13.55	□□□□□ -0.24
PABPC1-222	ENST00000523555	SBNO2	Q9Y2G9	1366 aa		13.55	□□□□□ -0.24
PABPC1-222	ENST00000523555	GLI3	P10071	1580 aa		13.54	□□□□□ -0.24
PABPC1-222	ENST00000523555	MON2	Q7Z3U7	1717 aa		13.54	□□□□□ -0.24
PABPC1-222	ENST00000523555	RXRB	P28702	533 aa		13.54	□□□□□ -0.24
PABPC1-222	ENST00000523555	COL14A1	Q05707	1796 aa	Known RBP	13.53	□□□□□ -0.24
PABPC1-222	ENST00000523555	CLSPN	Q9HAW4	1339 aa		13.53	□□□□□ -0.24
PABPC1-222	ENST00000523555	USP6	P35125	1406 aa		13.53	□□□□□ -0.24
PABPC1-222	ENST00000523555	HAP1	P54257	671 aa	Predicted RBP	13.52	□□□□□ -0.25
PABPC1-222	ENST00000523555	SSH2	Q76I76	1423 aa		13.52	□□□□□ -0.25
PABPC1-222	ENST00000523555	CDK12	Q9NYV4	1490 aa	Predicted RBP	13.52	□□□□□ -0.25
PABPC1-222	ENST00000523555	BRWD3	Q6RI45	1802 aa		13.52	□□□□□ -0.25
PABPC1-222	ENST00000523555	CD163L1	Q9NR16	1453 aa		13.51	□□□□□ -0.25
PABPC1-222	ENST00000523555	ST20-MTHFS	A0A0A6YYL1	179 aa		13.51	□□□□□ -0.25
PABPC1-222	ENST00000523555	FAM83G	A6ND36	823 aa		13.51	□□□□□ -0.25
PABPC1-222	ENST00000523555	RBM6	P78332	1123 aa	Known RBP	13.51	□□□□□ -0.25
PABPC1-222	ENST00000523555	CCER1	Q8TC90	406 aa	Predicted RBP	13.51	□□□□□ -0.25
PABPC1-222	ENST00000523555	TESK2	Q96S53	571 aa		13.51	□□□□□ -0.25
PABPC1-222	ENST00000523555	TRPC5	Q9UL62	973 aa	Predicted RBP	13.5	□□□□□ -0.25
PABPC1-222	ENST00000523555	CPSF1	Q10570	1443 aa	Known RBP	13.49	□□□□□ -0.25
PABPC1-222	ENST00000523555	UNC5CL	Q8IV45	518 aa		13.49	□□□□□ -0.25
PABPC1-222	ENST00000523555	ATAD2	Q6PL18	1390 aa		13.48	□□□□□ -0.25
PABPC1-222	ENST00000523555	USP47	Q96K76	1375 aa		13.48	□□□□□ -0.25
PABPC1-222	ENST00000523555	EP400	Q96L91	3159 aa		13.48	□□□□□ -0.25
PABPC1-222	ENST00000523555	LMO7	Q8WWI1	1683 aa		13.48	□□□□□ -0.25
PABPC1-222	ENST00000523555	ABTB2	Q8N961	1025 aa		13.48	□□□□□ -0.25
PABPC1-222	ENST00000523555	KIAA0232	Q92628	1395 aa		13.47	□□□□□ -0.25
PABPC1-222	ENST00000523555	USP19	O94966	1318 aa		13.47	□□□□□ -0.25
PABPC1-222	ENST00000523555	SLIT3	O75094	1523 aa		13.47	□□□□□ -0.25
PABPC1-222	ENST00000523555	RGPD5	Q99666	1765 aa		13.47	□□□□□ -0.25
PABPC1-222	ENST00000523555	ZC3H6	P61129	1189 aa	Known RBP	13.46	□□□□□ -0.25
PABPC1-222	ENST00000523555	CHRNA2	Q15822	529 aa		13.46	□□□□□ -0.25
PABPC1-222	ENST00000523555	GJD4	Q96KN9	370 aa	Predicted RBP	13.46	□□□□□ -0.25
PABPC1-222	ENST00000523555	BTG4	Q9NY30	223 aa		13.46	□□□□□ -0.25
PABPC1-222	ENST00000523555	TIMELESS	Q9UNS1	1208 aa		13.46	□□□□□ -0.25
PABPC1-222	ENST00000523555	COL18A1	P39060	1754 aa		13.45	□□□□□ -0.26
PABPC1-222	ENST00000523555	TTC21B	Q7Z4L5	1316 aa		13.45	□□□□□ -0.26
PABPC1-222	ENST00000523555	MYOM1	P52179	1685 aa		13.45	□□□□□ -0.26
PABPC1-222	ENST00000523555	USP54	Q70EL1	1684 aa		13.45	□□□□□ -0.26
PABPC1-222	ENST00000523555	SLC12A5	Q9H2X9	1139 aa		13.45	□□□□□ -0.26
PABPC1-222	ENST00000523555	KTN1	Q86UP2	1357 aa	Known RBP	13.45	□□□□□ -0.26
PABPC1-222	ENST00000523555	CAMTA1	Q9Y6Y1	1673 aa		13.44	□□□□□ -0.26
PABPC1-222	ENST00000523555	TMC1	Q8TDI8	760 aa		13.44	□□□□□ -0.26
PABPC1-222	ENST00000523555	PRDM11	Q9NQV5	511 aa		13.44	□□□□□ -0.26
PABPC1-222	ENST00000523555	ZRANB1	Q9UGI0	708 aa		13.44	□□□□□ -0.26
PABPC1-222	ENST00000523555		A0A1W2PP64	1363 aa		13.44	□□□□□ -0.26
PABPC1-222	ENST00000523555	BRD4	O60885	1362 aa	Predicted RBP	13.44	□□□□□ -0.26
PABPC1-222	ENST00000523555	NLRP6	P59044	892 aa		13.43	□□□□□ -0.26
PABPC1-222	ENST00000523555	VPS72	Q15906	364 aa		13.43	□□□□□ -0.26
PABPC1-222	ENST00000523555	GC	P02774	474 aa		13.42	□□□□□ -0.26
PABPC1-222	ENST00000523555	NLRP13	Q86W25	1043 aa		13.42	□□□□□ -0.26
PABPC1-222	ENST00000523555	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.42	□□□□□ -0.26
PABPC1-222	ENST00000523555	ZNF692	Q9BU19	519 aa	Predicted RBP	13.42	□□□□□ -0.26
PABPC1-222	ENST00000523555	LTN1	O94822	1766 aa		13.41	□□□□□ -0.26
PABPC1-222	ENST00000523555	NFAT5	O94916	1531 aa		13.41	□□□□□ -0.26
PABPC1-222	ENST00000523555	CCDC9	Q9Y3X0	531 aa	Known RBP	13.41	□□□□□ -0.26
PABPC1-222	ENST00000523555	CPD	O75976	1380 aa		13.41	□□□□□ -0.26
PABPC1-222	ENST00000523555	THSD7A	Q9UPZ6	1657 aa		13.4	□□□□□ -0.26
PABPC1-222	ENST00000523555	NME9	Q86XW9	330 aa		13.4	□□□□□ -0.26
PABPC1-222	ENST00000523555	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.4	□□□□□ -0.26
PABPC1-222	ENST00000523555	TTC21A	Q8NDW8	1320 aa		13.39	□□□□□ -0.27
PABPC1-222	ENST00000523555	PUS7	Q96PZ0	661 aa	Known RBP	13.39	□□□□□ -0.27
PABPC1-222	ENST00000523555	STRN4	Q9NRL3	753 aa		13.39	□□□□□ -0.27
PABPC1-222	ENST00000523555	COL5A2	P05997	1499 aa	Predicted RBP	13.38	□□□□□ -0.27
PABPC1-222	ENST00000523555	ZBTB7C	A1YPR0	619 aa		13.38	□□□□□ -0.27
PABPC1-222	ENST00000523555	SOX12	O15370	315 aa		13.38	□□□□□ -0.27
PABPC1-222	ENST00000523555	WNK3	Q9BYP7	1800 aa		13.38	□□□□□ -0.27
PABPC1-222	ENST00000523555	EDC4	Q6P2E9	1401 aa	Known RBP	13.38	□□□□□ -0.27
PABPC1-222	ENST00000523555	SPATA31A5	Q5VU36	1347 aa		13.38	□□□□□ -0.27
PABPC1-222	ENST00000523555	SPATA31A7	Q8IWB4	1347 aa		13.38	□□□□□ -0.27
PABPC1-222	ENST00000523555	KIF20B	Q96Q89	1820 aa		13.37	□□□□□ -0.27
PABPC1-222	ENST00000523555	TMF1	P82094	1093 aa		13.37	□□□□□ -0.27
PABPC1-222	ENST00000523555	FAM98C	Q17RN3	349 aa	Known RBP	13.37	□□□□□ -0.27
PABPC1-222	ENST00000523555	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.37	□□□□□ -0.27
PABPC1-222	ENST00000523555	SEPT12	Q8IYM1	358 aa		13.37	□□□□□ -0.27
PABPC1-222	ENST00000523555	USP31	Q70CQ4	1352 aa		13.36	□□□□□ -0.27
PABPC1-222	ENST00000523555	ONECUT3	O60422	494 aa	Predicted RBP	13.36	□□□□□ -0.27
PABPC1-222	ENST00000523555	LARP1	Q6PKG0	1096 aa	Known RBP	13.36	□□□□□ -0.27
PABPC1-222	ENST00000523555	AXIN2	Q9Y2T1	843 aa		13.36	□□□□□ -0.27
PABPC1-222	ENST00000523555	OVOS2	A0A0J9YW53	1432 aa		13.36	□□□□□ -0.27
PABPC1-222	ENST00000523555	OVOS2	Q6IE36	1432 aa		13.36	□□□□□ -0.27
PABPC1-222	ENST00000523555	SPATA31A1	Q5TZJ5	1347 aa		13.36	□□□□□ -0.27
PABPC1-222	ENST00000523555	HSPA5	P11021	654 aa	Known RBP	13.35	□□□□□ -0.27
PABPC1-222	ENST00000523555	AATK	Q6ZMQ8	1374 aa		13.34	□□□□□ -0.27
PABPC1-222	ENST00000523555	ANKRD36B	Q8N2N9	1353 aa		13.34	□□□□□ -0.27
PABPC1-222	ENST00000523555	NINL	Q9Y2I6	1382 aa		13.34	□□□□□ -0.27
PABPC1-222	ENST00000523555	ARHGEF25	Q86VW2	580 aa		13.34	□□□□□ -0.27
PABPC1-222	ENST00000523555	TERF2IP	Q9NYB0	399 aa		13.34	□□□□□ -0.27
PABPC1-222	ENST00000523555	USP35	Q9P2H5	1018 aa		13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms