RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 PRM3Q9NNZ6 103 aa13.13□□□□□ -0.31
SDCBP-208ENST00000520228 CTHP32929 405 aa13.12□□□□□ -0.31
SDCBP-208ENST00000520228 ANKLE1Q8NAG6 615 aa13.12□□□□□ -0.31
SDCBP-208ENST00000520228 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.12□□□□□ -0.31
SDCBP-208ENST00000520228 GGCXP38435 758 aa13.11□□□□□ -0.31
SDCBP-208ENST00000520228 IRF5Q13568 498 aa13.11□□□□□ -0.31
SDCBP-208ENST00000520228 PROSER2Q86WR7 435 aaPredicted RBP13.1□□□□□ -0.31
SDCBP-208ENST00000520228 CCDC24Q8N4L8 307 aa13.1□□□□□ -0.31
SDCBP-208ENST00000520228 FKBPLQ9UIM3 349 aa13.1□□□□□ -0.31
SDCBP-208ENST00000520228 UNC93B1Q9H1C4 597 aa13.09□□□□□ -0.31
SDCBP-208ENST00000520228 PLA2G2EQ9NZK7 142 aa13.09□□□□□ -0.31
SDCBP-208ENST00000520228 PLA2G2CQ5R387 149 aa13.08□□□□□ -0.32
SDCBP-208ENST00000520228 TRAK2O60296 914 aa13.07□□□□□ -0.32
SDCBP-208ENST00000520228 ABL2P42684 1182 aa13.07□□□□□ -0.32
SDCBP-208ENST00000520228 ZC3H4Q9UPT8 1303 aaKnown RBP13.07□□□□□ -0.32
SDCBP-208ENST00000520228 PNMA1Q8ND90 353 aa13.05□□□□□ -0.32
SDCBP-208ENST00000520228 ARMC2Q8NEN0 867 aa13.05□□□□□ -0.32
SDCBP-208ENST00000520228 GPKOWQ92917 476 aaPredicted RBP eCLIP13.03□□□□□ -0.321e-6■□□□□ 11.3
SDCBP-208ENST00000520228 A0A0G2JS52 829 aa13.02□□□□□ -0.33
SDCBP-208ENST00000520228 EMID1Q96A84 441 aaPredicted RBP13.02□□□□□ -0.33
SDCBP-208ENST00000520228 NBPF14Q5TI25 921 aa13□□□□□ -0.33
SDCBP-208ENST00000520228 PDXDC2PQ6P474 469 aa13□□□□□ -0.33
SDCBP-208ENST00000520228 RPIAP49247 311 aa12.99□□□□□ -0.33
SDCBP-208ENST00000520228 WASHC4Q2M389 1173 aa12.99□□□□□ -0.33
SDCBP-208ENST00000520228 BAP1Q92560 729 aa12.99□□□□□ -0.33
SDCBP-208ENST00000520228 OCSTAMPQ9BR26 566 aa12.99□□□□□ -0.33
SDCBP-208ENST00000520228 ZNF330Q9Y3S2 320 aaPredicted RBP12.99□□□□□ -0.33
SDCBP-208ENST00000520228 WWC1Q8IX03 1113 aa12.98□□□□□ -0.33
SDCBP-208ENST00000520228 GPSM3Q9Y4H4 160 aa12.98□□□□□ -0.33
SDCBP-208ENST00000520228 TRIM32Q13049 653 aa12.97□□□□□ -0.33
SDCBP-208ENST00000520228 LIAT1Q6ZQX7 453 aa12.97□□□□□ -0.33
SDCBP-208ENST00000520228 SH3BP5LQ7L8J4 393 aa12.97□□□□□ -0.33
SDCBP-208ENST00000520228 SCRIBQ14160 1630 aa12.97□□□□□ -0.33
SDCBP-208ENST00000520228 BICRAQ9NZM4 1560 aa12.96□□□□□ -0.33
SDCBP-208ENST00000520228 ZBBXA8MT70 800 aa12.96□□□□□ -0.33
SDCBP-208ENST00000520228 ZBTB24O43167 697 aaPredicted RBP12.96□□□□□ -0.33
SDCBP-208ENST00000520228 FBXO45P0C2W1 286 aa12.96□□□□□ -0.33
SDCBP-208ENST00000520228 NR1H3Q13133 447 aa12.96□□□□□ -0.33
SDCBP-208ENST00000520228 SH3RF1Q7Z6J0 888 aa12.96□□□□□ -0.33
SDCBP-208ENST00000520228 ZNF511Q8NB15 262 aa12.96□□□□□ -0.33
SDCBP-208ENST00000520228 POM121CA8CG34 1229 aa12.95□□□□□ -0.34
SDCBP-208ENST00000520228 SH3BP2P78314 561 aa12.95□□□□□ -0.34
SDCBP-208ENST00000520228 VAC14Q08AM6 782 aa12.95□□□□□ -0.34
SDCBP-208ENST00000520228 PLSCR2Q9NRY7 297 aa12.95□□□□□ -0.34
SDCBP-208ENST00000520228 SUPT5HO00267 1087 aaKnown RBP12.94□□□□□ -0.34
SDCBP-208ENST00000520228 PTK2Q05397 1052 aa12.94□□□□□ -0.34
SDCBP-208ENST00000520228 LINC01559Q495D7 138 aa12.94□□□□□ -0.34
SDCBP-208ENST00000520228 SKOR1P84550 965 aa12.92□□□□□ -0.34
SDCBP-208ENST00000520228 C4orf48Q5BLP8 95 aa12.92□□□□□ -0.34
SDCBP-208ENST00000520228 FOXJ1Q92949 421 aa12.92□□□□□ -0.34
SDCBP-208ENST00000520228 C1orf115Q9H7X2 142 aa12.92□□□□□ -0.34
SDCBP-208ENST00000520228 ZNF777Q9ULD5 760 aaPredicted RBP12.92□□□□□ -0.34
SDCBP-208ENST00000520228 UNC13AQ9UPW8 1703 aa12.92□□□□□ -0.34
SDCBP-208ENST00000520228 WNT7BP56706 349 aa12.91□□□□□ -0.34
SDCBP-208ENST00000520228 SLC19A1P41440 591 aa12.9□□□□□ -0.34
SDCBP-208ENST00000520228 ARHGAP9Q9BRR9 750 aa12.9□□□□□ -0.34
SDCBP-208ENST00000520228 ARID3CA6NKF2 412 aa12.89□□□□□ -0.35
SDCBP-208ENST00000520228 CD2BP2O95400 341 aaKnown RBP12.89□□□□□ -0.35
SDCBP-208ENST00000520228 BPHLQ86WA6 291 aaPredicted RBP12.89□□□□□ -0.35
SDCBP-208ENST00000520228 ADAMTS19Q8TE59 1207 aa12.89□□□□□ -0.35
SDCBP-208ENST00000520228 ALG2Q9H553 416 aa12.89□□□□□ -0.35
SDCBP-208ENST00000520228 ADAM32Q8TC27 787 aa12.88□□□□□ -0.35
SDCBP-208ENST00000520228 C1QTNF2Q9BXJ5 285 aa12.88□□□□□ -0.35
SDCBP-208ENST00000520228 SOX11P35716 441 aa12.86□□□□□ -0.35
SDCBP-208ENST00000520228 SPRYD7Q5W111 196 aa12.86□□□□□ -0.35
SDCBP-208ENST00000520228 SHROOM4Q9ULL8 1493 aa12.85□□□□□ -0.35
SDCBP-208ENST00000520228 EIF4G2P78344 907 aaKnown RBP eCLIP12.85□□□□□ -0.35
SDCBP-208ENST00000520228 ERFEQ4G0M1 354 aa12.85□□□□□ -0.35
SDCBP-208ENST00000520228 V9GY48 417 aaPredicted RBP12.85□□□□□ -0.35
SDCBP-208ENST00000520228 ZBTB33Q86T24 672 aa12.84□□□□□ -0.35
SDCBP-208ENST00000520228 GLMNQ92990 594 aa12.84□□□□□ -0.35
SDCBP-208ENST00000520228 MAGEB6P1A0A0J9YX57 407 aa12.83□□□□□ -0.36
SDCBP-208ENST00000520228 AGERQ15109 404 aa12.83□□□□□ -0.36
SDCBP-208ENST00000520228 HDGFL1Q5TGJ6 251 aa12.83□□□□□ -0.36
SDCBP-208ENST00000520228 CARD14Q9BXL6 1004 aa12.83□□□□□ -0.36
SDCBP-208ENST00000520228 PRKD2Q9BZL6 878 aa12.83□□□□□ -0.36
SDCBP-208ENST00000520228 VARSP26640 1264 aaKnown RBP12.82□□□□□ -0.36
SDCBP-208ENST00000520228 RC3H1Q5TC82 1133 aaKnown RBP12.82□□□□□ -0.36
SDCBP-208ENST00000520228 TRMT44Q8IYL2 757 aaKnown RBP12.82□□□□□ -0.36
SDCBP-208ENST00000520228 ZNF598Q86UK7 904 aaKnown RBP12.81□□□□□ -0.36
SDCBP-208ENST00000520228 MCCD1P59942 119 aaPredicted RBP12.8□□□□□ -0.36
SDCBP-208ENST00000520228 WNT7AO00755 349 aa12.79□□□□□ -0.36
SDCBP-208ENST00000520228 SEMA3FQ13275 785 aa12.79□□□□□ -0.36
SDCBP-208ENST00000520228 CALR3Q96L12 384 aaKnown RBP12.79□□□□□ -0.36
SDCBP-208ENST00000520228 SIAH2O43255 324 aa12.78□□□□□ -0.36
SDCBP-208ENST00000520228 ZNF697Q5TEC3 545 aa12.78□□□□□ -0.36
SDCBP-208ENST00000520228 ZNF592Q92610 1267 aa12.78□□□□□ -0.36
SDCBP-208ENST00000520228 PCDHB9Q9Y5E1 797 aa12.78□□□□□ -0.36
SDCBP-208ENST00000520228 EHBP1Q8NDI1 1231 aa12.77□□□□□ -0.37
SDCBP-208ENST00000520228 DZIP3Q86Y13 1208 aaKnown RBP12.76□□□□□ -0.37
SDCBP-208ENST00000520228 MPNDQ8N594 471 aa12.76□□□□□ -0.37
SDCBP-208ENST00000520228 FAM174AQ8TBP5 190 aa12.76□□□□□ -0.37
SDCBP-208ENST00000520228 PKD2L1Q9P0L9 805 aa12.76□□□□□ -0.37
SDCBP-208ENST00000520228 CEP126Q9P2H0 1117 aa12.76□□□□□ -0.37
SDCBP-208ENST00000520228 CCDC82Q8N4S0 544 aa12.75□□□□□ -0.37
SDCBP-208ENST00000520228 MRGPRX2Q96LB1 330 aa12.75□□□□□ -0.37
SDCBP-208ENST00000520228 UCN2Q96RP3 112 aa12.75□□□□□ -0.37
SDCBP-208ENST00000520228 RGS20O76081 388 aa12.74□□□□□ -0.37
SDCBP-208ENST00000520228 CDK15Q96Q40 435 aa12.74□□□□□ -0.37
SDCBP-208ENST00000520228 MAP4K5Q9Y4K4 846 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms