RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 PAXIP1Q6ZW49 1069 aaPredicted RBP6.35□□□□□ -1.39
CPNE3-204ENST00000517862 ANKLE1Q8NAG6 615 aa6.35□□□□□ -1.39
CPNE3-204ENST00000517862 CFAP44Q96MT7 982 aa6.35□□□□□ -1.39
CPNE3-204ENST00000517862 KDM2AQ9Y2K7 1162 aa6.35□□□□□ -1.39
CPNE3-204ENST00000517862 PLA2R1Q13018 1463 aa6.34□□□□□ -1.39
CPNE3-204ENST00000517862 TCOF1Q13428 1488 aaKnown RBP6.34□□□□□ -1.39
CPNE3-204ENST00000517862 RNF225M0QZC1 329 aaPredicted RBP6.34□□□□□ -1.39
CPNE3-204ENST00000517862 COPS2P61201 443 aa6.34□□□□□ -1.39
CPNE3-204ENST00000517862 GPAT2Q6NUI2 795 aa6.34□□□□□ -1.39
CPNE3-204ENST00000517862 LIAT1Q6ZQX7 453 aa6.34□□□□□ -1.39
CPNE3-204ENST00000517862 FBXW7Q969H0 707 aa6.34□□□□□ -1.39
CPNE3-204ENST00000517862 SAMD7Q7Z3H4 446 aa6.33□□□□□ -1.4
CPNE3-204ENST00000517862 KIFC2Q96AC6 838 aa6.33□□□□□ -1.4
CPNE3-204ENST00000517862 ATP13A2Q9NQ11 1180 aa6.33□□□□□ -1.4
CPNE3-204ENST00000517862 NXF1Q9UBU9 619 aaKnown RBP6.33□□□□□ -1.4
CPNE3-204ENST00000517862 RAPGEF2Q9Y4G8 1499 aa6.33□□□□□ -1.4
CPNE3-204ENST00000517862 LRP6O75581 1613 aa6.32□□□□□ -1.4
CPNE3-204ENST00000517862 JCADQ9P266 1359 aa6.32□□□□□ -1.4
CPNE3-204ENST00000517862 TOP2AP11388 1531 aaKnown RBP6.32□□□□□ -1.4
CPNE3-204ENST00000517862 ZFYVE16Q7Z3T8 1539 aa6.32□□□□□ -1.4
CPNE3-204ENST00000517862 RBM6P78332 1123 aaKnown RBP6.32□□□□□ -1.4
CPNE3-204ENST00000517862 FOXC1Q12948 553 aa6.32□□□□□ -1.4
CPNE3-204ENST00000517862 TPRNQ4KMQ1 711 aa6.32□□□□□ -1.4
CPNE3-204ENST00000517862 FAM135BQ49AJ0 1406 aa6.32□□□□□ -1.4
CPNE3-204ENST00000517862 CHD4Q14839 1912 aa6.31□□□□□ -1.4
CPNE3-204ENST00000517862 RGL2O15211 777 aa6.31□□□□□ -1.4
CPNE3-204ENST00000517862 ZPR1O75312 459 aa6.31□□□□□ -1.4
CPNE3-204ENST00000517862 NPAS3Q8IXF0 933 aa6.31□□□□□ -1.4
CPNE3-204ENST00000517862 BBXQ8WY36 941 aaPredicted RBP6.31□□□□□ -1.4
CPNE3-204ENST00000517862 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.31□□□□□ -1.4
CPNE3-204ENST00000517862 PCDHGA10Q9Y5H3 936 aa6.31□□□□□ -1.4
CPNE3-204ENST00000517862 RICTORQ6R327 1708 aa6.3□□□□□ -1.4
CPNE3-204ENST00000517862 EFCAB5A4FU69 1503 aa6.3□□□□□ -1.4
CPNE3-204ENST00000517862 BCL9LQ86UU0 1499 aa6.3□□□□□ -1.4
CPNE3-204ENST00000517862 NEO1Q92859 1461 aa6.3□□□□□ -1.4
CPNE3-204ENST00000517862 PPP1R37O75864 691 aa6.3□□□□□ -1.4
CPNE3-204ENST00000517862 APLP1P51693 650 aa6.3□□□□□ -1.4
CPNE3-204ENST00000517862 TYW1BQ6NUM6 668 aa6.3□□□□□ -1.4
CPNE3-204ENST00000517862 RNF40O75150 1001 aa6.29□□□□□ -1.4
CPNE3-204ENST00000517862 CARMIL2Q6F5E8 1435 aa6.29□□□□□ -1.4
CPNE3-204ENST00000517862 DEFB132Q7Z7B7 95 aa6.29□□□□□ -1.4
CPNE3-204ENST00000517862 PACS2Q86VP3 889 aa6.29□□□□□ -1.4
CPNE3-204ENST00000517862 VWDEQ8N2E2 1590 aa6.29□□□□□ -1.4
CPNE3-204ENST00000517862 HSPA6P17066 643 aa6.28□□□□□ -1.4
CPNE3-204ENST00000517862 CYP4X1Q8N118 509 aa6.28□□□□□ -1.4
CPNE3-204ENST00000517862 NECTIN2Q92692 538 aa6.28□□□□□ -1.4
CPNE3-204ENST00000517862 ESF1Q9H501 851 aaKnown RBP6.28□□□□□ -1.4
CPNE3-204ENST00000517862 QTRT2Q9H974 415 aaKnown RBP6.28□□□□□ -1.4
CPNE3-204ENST00000517862 PKD2L1Q9P0L9 805 aa6.28□□□□□ -1.4
CPNE3-204ENST00000517862 CAMTA1Q9Y6Y1 1673 aa6.28□□□□□ -1.4
CPNE3-204ENST00000517862 CCDC88BA6NC98 1476 aa6.28□□□□□ -1.4
CPNE3-204ENST00000517862 DENND4BO75064 1496 aaPredicted RBP6.28□□□□□ -1.4
CPNE3-204ENST00000517862 PHLPP1O60346 1717 aa6.28□□□□□ -1.4
CPNE3-204ENST00000517862 AFF2P51816 1311 aa6.27□□□□□ -1.41
CPNE3-204ENST00000517862 SPATA31A6Q5VVP1 1343 aa6.27□□□□□ -1.41
CPNE3-204ENST00000517862 NWD1Q149M9 1564 aa6.27□□□□□ -1.41
CPNE3-204ENST00000517862 ROBO1Q9Y6N7 1651 aa6.27□□□□□ -1.41
CPNE3-204ENST00000517862 CDK13Q14004 1512 aaKnown RBP6.27□□□□□ -1.41
CPNE3-204ENST00000517862 KRTAP4-8A0A0G2JLE6 195 aa6.27□□□□□ -1.41
CPNE3-204ENST00000517862 STK25O00506 426 aa6.27□□□□□ -1.41
CPNE3-204ENST00000517862 NGLY1Q96IV0 654 aa6.27□□□□□ -1.41
CPNE3-204ENST00000517862 WWC3Q9ULE0 1092 aa6.27□□□□□ -1.41
CPNE3-204ENST00000517862 FAM161AQ3B820 660 aa6.26□□□□□ -1.41
CPNE3-204ENST00000517862 TSHZ2Q9NRE2 1034 aa6.26□□□□□ -1.41
CPNE3-204ENST00000517862 TOR4AQ9NXH8 423 aa6.26□□□□□ -1.41
CPNE3-204ENST00000517862 ERICH3Q5RHP9 1530 aa6.25□□□□□ -1.41
CPNE3-204ENST00000517862 POLR1AO95602 1720 aaPredicted RBP6.25□□□□□ -1.41
CPNE3-204ENST00000517862 DNMT3AQ9Y6K1 912 aaPredicted RBP6.25□□□□□ -1.41
CPNE3-204ENST00000517862 STRCP1A6NGW2 1772 aa6.25□□□□□ -1.41
CPNE3-204ENST00000517862 ZMYM4Q5VZL5 1548 aa6.25□□□□□ -1.41
CPNE3-204ENST00000517862 FHOD3Q2V2M9 1422 aa6.25□□□□□ -1.41
CPNE3-204ENST00000517862 TNS2Q63HR2 1409 aa6.25□□□□□ -1.41
CPNE3-204ENST00000517862 ZNF142P52746 1687 aaPredicted RBP6.24□□□□□ -1.41
CPNE3-204ENST00000517862 SYNMO15061 1565 aa6.24□□□□□ -1.41
CPNE3-204ENST00000517862 ABCA8O94911 1581 aa6.24□□□□□ -1.41
CPNE3-204ENST00000517862 PPEF1O14829 653 aaPredicted RBP6.24□□□□□ -1.41
CPNE3-204ENST00000517862 ADAM23O75077 832 aa6.24□□□□□ -1.41
CPNE3-204ENST00000517862 HDGFP51858 240 aaKnown RBP6.24□□□□□ -1.41
CPNE3-204ENST00000517862 FOXK2Q01167 660 aa6.24□□□□□ -1.41
CPNE3-204ENST00000517862 SF3B2Q13435 895 aaKnown RBP6.24□□□□□ -1.41
CPNE3-204ENST00000517862 KRTAP9-9Q9BYP9 154 aa6.24□□□□□ -1.41
CPNE3-204ENST00000517862 KRTAP9-4Q9BYQ2 154 aa6.24□□□□□ -1.41
CPNE3-204ENST00000517862 BLMP54132 1417 aaPredicted RBP6.24□□□□□ -1.41
CPNE3-204ENST00000517862 UTRNP46939 3433 aa6.24□□□□□ -1.41
CPNE3-204ENST00000517862 KDM5CP41229 1560 aa6.23□□□□□ -1.41
CPNE3-204ENST00000517862 MAGI2Q86UL8 1455 aa6.23□□□□□ -1.41
CPNE3-204ENST00000517862 R3HDM1Q15032 1099 aaKnown RBP6.23□□□□□ -1.41
CPNE3-204ENST00000517862 C6orf132Q5T0Z8 1188 aa6.23□□□□□ -1.41
CPNE3-204ENST00000517862 PPP1R1BQ9UD71 204 aaPredicted RBP6.23□□□□□ -1.41
CPNE3-204ENST00000517862 CEP170BQ9Y4F5 1589 aaPredicted RBP6.23□□□□□ -1.41
CPNE3-204ENST00000517862 ATP10AO60312 1499 aa6.22□□□□□ -1.41
CPNE3-204ENST00000517862 H3BM21 787 aa6.22□□□□□ -1.41
CPNE3-204ENST00000517862 PHF14O94880 888 aa6.22□□□□□ -1.41
CPNE3-204ENST00000517862 CHGAP10645 457 aaKnown RBP6.22□□□□□ -1.41
CPNE3-204ENST00000517862 SPRYD3Q8NCJ5 442 aa6.22□□□□□ -1.41
CPNE3-204ENST00000517862 NPATQ14207 1427 aa6.22□□□□□ -1.41
CPNE3-204ENST00000517862 C9orf84Q5VXU9 1444 aa6.22□□□□□ -1.41
CPNE3-204ENST00000517862 NEURL4Q96JN8 1562 aa6.22□□□□□ -1.41
CPNE3-204ENST00000517862 MYO3AQ8NEV4 1616 aa6.21□□□□□ -1.41
CPNE3-204ENST00000517862 ERBB4Q15303 1308 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms