RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 FNBP4Q8N3X1 1017 aaPredicted RBP9.98□□□□□ -0.81
CPNE3-202ENST00000517391 COG6Q9Y2V7 657 aa9.98□□□□□ -0.81
CPNE3-202ENST00000517391 NDUFV2P19404 249 aa9.97□□□□□ -0.81
CPNE3-202ENST00000517391 ZSCAN1Q8NBB4 408 aa9.97□□□□□ -0.81
CPNE3-202ENST00000517391 TTC24A2A3L6 582 aaPredicted RBP9.96□□□□□ -0.82
CPNE3-202ENST00000517391 NUTM2BA6NNL0 878 aaPredicted RBP9.96□□□□□ -0.82
CPNE3-202ENST00000517391 NUTM2EB1AL46 878 aaPredicted RBP9.96□□□□□ -0.82
CPNE3-202ENST00000517391 FUT2Q10981 343 aa9.96□□□□□ -0.82
CPNE3-202ENST00000517391 NUTM2DQ5VT03 806 aaPredicted RBP9.96□□□□□ -0.82
CPNE3-202ENST00000517391 NUTM2AQ8IVF1 878 aaPredicted RBP9.96□□□□□ -0.82
CPNE3-202ENST00000517391 POM121Q96HA1 1249 aa9.96□□□□□ -0.82
CPNE3-202ENST00000517391 CSPP1Q1MSJ5 1256 aa9.95□□□□□ -0.82
CPNE3-202ENST00000517391 FBXO31Q5XUX0 539 aaPredicted RBP9.95□□□□□ -0.82
CPNE3-202ENST00000517391 WWC1Q8IX03 1113 aa9.95□□□□□ -0.82
CPNE3-202ENST00000517391 KIFC2Q96AC6 838 aa9.95□□□□□ -0.82
CPNE3-202ENST00000517391 ZNF777Q9ULD5 760 aaPredicted RBP9.95□□□□□ -0.82
CPNE3-202ENST00000517391 PCDHB15Q9Y5E8 787 aa9.95□□□□□ -0.82
CPNE3-202ENST00000517391 SCUBE3Q8IX30 993 aa9.94□□□□□ -0.82
CPNE3-202ENST00000517391 HOXA2O43364 376 aa9.93□□□□□ -0.82
CPNE3-202ENST00000517391 ATP6V1AP38606 617 aa9.93□□□□□ -0.82
CPNE3-202ENST00000517391 QPCTQ16769 361 aa9.93□□□□□ -0.82
CPNE3-202ENST00000517391 CCDC82Q8N4S0 544 aa9.93□□□□□ -0.82
CPNE3-202ENST00000517391 SPSB2Q99619 263 aa9.93□□□□□ -0.82
CPNE3-202ENST00000517391 ZBTB3Q9H5J0 574 aa9.93□□□□□ -0.82
CPNE3-202ENST00000517391 AP1G2O75843 785 aa9.92□□□□□ -0.82
CPNE3-202ENST00000517391 FDX1P10109 184 aa9.92□□□□□ -0.82
CPNE3-202ENST00000517391 GRIPAP1Q4V328 841 aa9.92□□□□□ -0.82
CPNE3-202ENST00000517391 RTL5Q5HYW3 569 aaPredicted RBP9.92□□□□□ -0.82
CPNE3-202ENST00000517391 MTMR14Q8NCE2 650 aa9.92□□□□□ -0.82
CPNE3-202ENST00000517391 SERPINA10Q9UK55 444 aa9.92□□□□□ -0.82
CPNE3-202ENST00000517391 ZNF330Q9Y3S2 320 aaPredicted RBP9.92□□□□□ -0.82
CPNE3-202ENST00000517391 MORN1Q5T089 497 aa9.91□□□□□ -0.82
CPNE3-202ENST00000517391 HRCP23327 699 aa9.9□□□□□ -0.82
CPNE3-202ENST00000517391 LORP23490 312 aaPredicted RBP9.9□□□□□ -0.82
CPNE3-202ENST00000517391 CCDC97Q96F63 343 aaPredicted RBP9.9□□□□□ -0.82
CPNE3-202ENST00000517391 SLC27A5Q9Y2P5 690 aa9.89□□□□□ -0.83
CPNE3-202ENST00000517391 SMPD1P17405 629 aa9.88□□□□□ -0.83
CPNE3-202ENST00000517391 GMPRP36959 345 aa9.88□□□□□ -0.83
CPNE3-202ENST00000517391 SNIP1Q8TAD8 396 aaKnown RBP9.88□□□□□ -0.83
CPNE3-202ENST00000517391 CABLES1Q8TDN4 633 aa9.88□□□□□ -0.83
CPNE3-202ENST00000517391 HLA-CQ95604 372 aa9.88□□□□□ -0.83
CPNE3-202ENST00000517391 GDPD2Q9HCC8 539 aa9.88□□□□□ -0.83
CPNE3-202ENST00000517391 FCF1Q9Y324 198 aaKnown RBP9.88□□□□□ -0.83
CPNE3-202ENST00000517391 USP17L8P0C7I0 530 aa9.87□□□□□ -0.83
CPNE3-202ENST00000517391 IRF7Q92985 503 aa9.87□□□□□ -0.83
CPNE3-202ENST00000517391 NXF1Q9UBU9 619 aaKnown RBP9.87□□□□□ -0.83
CPNE3-202ENST00000517391 MTMR2Q13614 643 aa9.86□□□□□ -0.83
CPNE3-202ENST00000517391 NPAS3Q8IXF0 933 aa9.86□□□□□ -0.83
CPNE3-202ENST00000517391 HELBQ8NG08 1087 aaPredicted RBP9.85□□□□□ -0.83
CPNE3-202ENST00000517391 PCDHGC3Q9UN70 934 aa9.85□□□□□ -0.83
CPNE3-202ENST00000517391 WNT7AO00755 349 aa9.84□□□□□ -0.83
CPNE3-202ENST00000517391 ZBTB24O43167 697 aaPredicted RBP9.84□□□□□ -0.83
CPNE3-202ENST00000517391 ABL2P42684 1182 aa9.84□□□□□ -0.83
CPNE3-202ENST00000517391 GUCA2AQ02747 115 aa9.84□□□□□ -0.83
CPNE3-202ENST00000517391 FMNL1O95466 1100 aaPredicted RBP9.82□□□□□ -0.84
CPNE3-202ENST00000517391 RNF19BQ6ZMZ0 732 aa9.82□□□□□ -0.84
CPNE3-202ENST00000517391 THAP11Q96EK4 314 aa9.82□□□□□ -0.84
CPNE3-202ENST00000517391 NDUFB9Q9Y6M9 179 aa9.82□□□□□ -0.84
CPNE3-202ENST00000517391 CTDSPL2Q05D32 466 aa9.81□□□□□ -0.84
CPNE3-202ENST00000517391 BRICD5Q6PL45 260 aa9.81□□□□□ -0.84
CPNE3-202ENST00000517391 TBC1D2BQ9UPU7 963 aa9.81□□□□□ -0.84
CPNE3-202ENST00000517391 C6orf229H3BNL8 230 aa9.8□□□□□ -0.84
CPNE3-202ENST00000517391 PDIA4P13667 645 aaKnown RBP9.8□□□□□ -0.84
CPNE3-202ENST00000517391 GJD4Q96KN9 370 aaPredicted RBP9.8□□□□□ -0.84
CPNE3-202ENST00000517391 WASHC4Q2M389 1173 aa9.79□□□□□ -0.84
CPNE3-202ENST00000517391 Q3C1V9 767 aa9.79□□□□□ -0.84
CPNE3-202ENST00000517391 CALR3Q96L12 384 aaKnown RBP9.79□□□□□ -0.84
CPNE3-202ENST00000517391 SALL2Q9Y467 1007 aaPredicted RBP9.79□□□□□ -0.84
CPNE3-202ENST00000517391 J3QL48 77 aa9.78□□□□□ -0.84
CPNE3-202ENST00000517391 FAM160A2Q8N612 972 aaPredicted RBP9.78□□□□□ -0.84
CPNE3-202ENST00000517391 SYMPKQ92797 1274 aaKnown RBP9.78□□□□□ -0.84
CPNE3-202ENST00000517391 TSC1Q92574 1164 aa9.77□□□□□ -0.85
CPNE3-202ENST00000517391 HPS1Q92902 700 aa9.76□□□□□ -0.85
CPNE3-202ENST00000517391 PRDM9Q9NQV7 894 aa9.76□□□□□ -0.85
CPNE3-202ENST00000517391 CFAP99D6REC4 459 aa9.75□□□□□ -0.85
CPNE3-202ENST00000517391 MRGPRX2Q96LB1 330 aa9.75□□□□□ -0.85
CPNE3-202ENST00000517391 H3BM21 787 aa9.74□□□□□ -0.85
CPNE3-202ENST00000517391 KCNMA1Q12791 1236 aa9.74□□□□□ -0.85
CPNE3-202ENST00000517391 KCTD17Q8N5Z5 321 aa9.74□□□□□ -0.85
CPNE3-202ENST00000517391 PRR7Q8TB68 274 aa9.74□□□□□ -0.85
CPNE3-202ENST00000517391 GLMNQ92990 594 aa9.74□□□□□ -0.85
CPNE3-202ENST00000517391 USB1Q9BQ65 265 aaKnown RBP9.74□□□□□ -0.85
CPNE3-202ENST00000517391 TRIM34Q9BYJ4 488 aa9.74□□□□□ -0.85
CPNE3-202ENST00000517391 PPP1R15AO75807 674 aaPredicted RBP9.73□□□□□ -0.85
CPNE3-202ENST00000517391 IRF5Q13568 498 aa9.73□□□□□ -0.85
CPNE3-202ENST00000517391 DESI1Q6ICB0 168 aa9.73□□□□□ -0.85
CPNE3-202ENST00000517391 RETREG3Q86VR2 466 aa9.73□□□□□ -0.85
CPNE3-202ENST00000517391 LRRN4Q8WUT4 740 aa9.73□□□□□ -0.85
CPNE3-202ENST00000517391 HMX1Q9NP08 348 aaPredicted RBP9.73□□□□□ -0.85
CPNE3-202ENST00000517391 PODXL2Q9NZ53 605 aa9.73□□□□□ -0.85
CPNE3-202ENST00000517391 POM121CA8CG34 1229 aa9.72□□□□□ -0.85
CPNE3-202ENST00000517391 MSS51Q4VC12 460 aa9.72□□□□□ -0.85
CPNE3-202ENST00000517391 TRIM26Q12899 539 aaPredicted RBP9.71□□□□□ -0.86
CPNE3-202ENST00000517391 TRIM32Q13049 653 aa9.71□□□□□ -0.86
CPNE3-202ENST00000517391 PNMA1Q8ND90 353 aa9.71□□□□□ -0.86
CPNE3-202ENST00000517391 ACIN1Q9UKV3 1341 aaKnown RBP9.71□□□□□ -0.86
CPNE3-202ENST00000517391 HDGFL1Q5TGJ6 251 aa9.7□□□□□ -0.86
CPNE3-202ENST00000517391 VEGFBP49765 207 aa9.69□□□□□ -0.86
CPNE3-202ENST00000517391 ERBB4Q15303 1308 aa9.69□□□□□ -0.86
CPNE3-202ENST00000517391 SOX11P35716 441 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms