RNA–Protein interactions for RNA: ENST00000517354.5

CPNE3-201, Transcript of copine 3, humanhuman

TSL 4

Gene CPNE3, Length 566 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-201ENST00000517354 CLUAP1Q96AJ1 413 aa11.57□□□□□ -0.56
CPNE3-201ENST00000517354 FKBPLQ9UIM3 349 aa11.57□□□□□ -0.56
CPNE3-201ENST00000517354 TBC1D2BQ9UPU7 963 aa11.57□□□□□ -0.56
CPNE3-201ENST00000517354 COG6Q9Y2V7 657 aa11.57□□□□□ -0.56
CPNE3-201ENST00000517354 NBPF14Q5TI25 921 aa11.55□□□□□ -0.56
CPNE3-201ENST00000517354 POM121Q96HA1 1249 aa11.55□□□□□ -0.56
CPNE3-201ENST00000517354 A0A0G2JS52 829 aa11.54□□□□□ -0.56
CPNE3-201ENST00000517354 A6NJR5 290 aa11.54□□□□□ -0.56
CPNE3-201ENST00000517354 AGERQ15109 404 aa11.54□□□□□ -0.56
CPNE3-201ENST00000517354 BAP1Q92560 729 aa11.53□□□□□ -0.56
CPNE3-201ENST00000517354 SLC19A1P41440 591 aa11.52□□□□□ -0.57
CPNE3-201ENST00000517354 RPIAP49247 311 aa11.52□□□□□ -0.57
CPNE3-201ENST00000517354 PTK2Q05397 1052 aa11.52□□□□□ -0.57
CPNE3-201ENST00000517354 GPKOWQ92917 476 aaPredicted RBP eCLIP11.52□□□□□ -0.57
CPNE3-201ENST00000517354 ZC3H4Q9UPT8 1303 aaKnown RBP11.52□□□□□ -0.57
CPNE3-201ENST00000517354 LINC01559Q495D7 138 aa11.51□□□□□ -0.57
CPNE3-201ENST00000517354 WASHC4Q2M389 1173 aa11.5□□□□□ -0.57
CPNE3-201ENST00000517354 PLA2G2CQ5R387 149 aa11.5□□□□□ -0.57
CPNE3-201ENST00000517354 PROSER2Q86WR7 435 aaPredicted RBP11.5□□□□□ -0.57
CPNE3-201ENST00000517354 ZNF330Q9Y3S2 320 aaPredicted RBP11.5□□□□□ -0.57
CPNE3-201ENST00000517354 TRIM32Q13049 653 aa11.49□□□□□ -0.57
CPNE3-201ENST00000517354 PDXDC2PQ6P474 469 aa11.49□□□□□ -0.57
CPNE3-201ENST00000517354 LIAT1Q6ZQX7 453 aa11.47□□□□□ -0.57
CPNE3-201ENST00000517354 ZBTB33Q86T24 672 aa11.47□□□□□ -0.57
CPNE3-201ENST00000517354 BPHLQ86WA6 291 aaPredicted RBP11.47□□□□□ -0.57
CPNE3-201ENST00000517354 ZBBXA8MT70 800 aa11.46□□□□□ -0.57
CPNE3-201ENST00000517354 ZNF511Q8NB15 262 aa11.46□□□□□ -0.57
CPNE3-201ENST00000517354 ARHGAP9Q9BRR9 750 aa11.46□□□□□ -0.57
CPNE3-201ENST00000517354 PRKD2Q9BZL6 878 aa11.46□□□□□ -0.57
CPNE3-201ENST00000517354 GPSM3Q9Y4H4 160 aa11.46□□□□□ -0.57
CPNE3-201ENST00000517354 MAGEB6P1A0A0J9YX57 407 aa11.45□□□□□ -0.58
CPNE3-201ENST00000517354 TRAK2O60296 914 aa11.45□□□□□ -0.58
CPNE3-201ENST00000517354 WNT7BP56706 349 aa11.44□□□□□ -0.58
CPNE3-201ENST00000517354 SH3BP2P78314 561 aa11.43□□□□□ -0.58
CPNE3-201ENST00000517354 EIF4G2P78344 907 aaKnown RBP eCLIP11.43□□□□□ -0.58
CPNE3-201ENST00000517354 VAC14Q08AM6 782 aa11.43□□□□□ -0.58
CPNE3-201ENST00000517354 NR1H3Q13133 447 aa11.43□□□□□ -0.58
CPNE3-201ENST00000517354 IRF5Q13568 498 aa11.43□□□□□ -0.58
CPNE3-201ENST00000517354 CARD14Q9BXL6 1004 aa11.43□□□□□ -0.58
CPNE3-201ENST00000517354 FOXJ1Q92949 421 aa11.42□□□□□ -0.58
CPNE3-201ENST00000517354 ZNF777Q9ULD5 760 aaPredicted RBP11.42□□□□□ -0.58
CPNE3-201ENST00000517354 FBXO45P0C2W1 286 aa11.41□□□□□ -0.58
CPNE3-201ENST00000517354 SPRYD7Q5W111 196 aa11.41□□□□□ -0.58
CPNE3-201ENST00000517354 ZNF592Q92610 1267 aa11.41□□□□□ -0.58
CPNE3-201ENST00000517354 V9GY48 417 aaPredicted RBP11.41□□□□□ -0.58
CPNE3-201ENST00000517354 SEMA3FQ13275 785 aa11.4□□□□□ -0.58
CPNE3-201ENST00000517354 RC3H1Q5TC82 1133 aaKnown RBP11.4□□□□□ -0.58
CPNE3-201ENST00000517354 FNBP4Q8N3X1 1017 aaPredicted RBP11.4□□□□□ -0.58
CPNE3-201ENST00000517354 EHBP1Q8NDI1 1231 aa11.4□□□□□ -0.58
CPNE3-201ENST00000517354 ARXQ96QS3 562 aa11.4□□□□□ -0.58
CPNE3-201ENST00000517354 SUPT5HO00267 1087 aaKnown RBP11.39□□□□□ -0.59
CPNE3-201ENST00000517354 VARSP26640 1264 aaKnown RBP11.39□□□□□ -0.59
CPNE3-201ENST00000517354 ZNF697Q5TEC3 545 aa11.39□□□□□ -0.59
CPNE3-201ENST00000517354 SH3BP5LQ7L8J4 393 aa11.39□□□□□ -0.59
CPNE3-201ENST00000517354 ZNF598Q86UK7 904 aaKnown RBP11.39□□□□□ -0.59
CPNE3-201ENST00000517354 DZIP3Q86Y13 1208 aaKnown RBP11.39□□□□□ -0.59
CPNE3-201ENST00000517354 MCCD1P59942 119 aaPredicted RBP11.38□□□□□ -0.59
CPNE3-201ENST00000517354 FAM174AQ8TBP5 190 aa11.38□□□□□ -0.59
CPNE3-201ENST00000517354 ADAM32Q8TC27 787 aa11.38□□□□□ -0.59
CPNE3-201ENST00000517354 PCDHB9Q9Y5E1 797 aa11.38□□□□□ -0.59
CPNE3-201ENST00000517354 SOX11P35716 441 aa11.37□□□□□ -0.59
CPNE3-201ENST00000517354 SKOR1P84550 965 aa11.37□□□□□ -0.59
CPNE3-201ENST00000517354 FOXC1Q12948 553 aa11.37□□□□□ -0.59
CPNE3-201ENST00000517354 EMID1Q96A84 441 aaPredicted RBP11.36□□□□□ -0.59
CPNE3-201ENST00000517354 GPR37L1O60883 481 aa11.35□□□□□ -0.59
CPNE3-201ENST00000517354 RGS20O76081 388 aa11.35□□□□□ -0.59
CPNE3-201ENST00000517354 CALR3Q96L12 384 aaKnown RBP11.35□□□□□ -0.59
CPNE3-201ENST00000517354 ARID5BQ14865 1188 aa11.34□□□□□ -0.59
CPNE3-201ENST00000517354 HDGFL1Q5TGJ6 251 aa11.34□□□□□ -0.59
CPNE3-201ENST00000517354 SH3RF1Q7Z6J0 888 aa11.34□□□□□ -0.59
CPNE3-201ENST00000517354 SLC10A4Q96EP9 437 aa11.34□□□□□ -0.59
CPNE3-201ENST00000517354 POM121CA8CG34 1229 aa11.33□□□□□ -0.6
CPNE3-201ENST00000517354 WNT7AO00755 349 aa11.33□□□□□ -0.6
CPNE3-201ENST00000517354 ERFEQ4G0M1 354 aa11.32□□□□□ -0.6
CPNE3-201ENST00000517354 C4orf48Q5BLP8 95 aa11.32□□□□□ -0.6
CPNE3-201ENST00000517354 CDV3Q9UKY7 258 aaKnown RBP11.32□□□□□ -0.6
CPNE3-201ENST00000517354 ARID3CA6NKF2 412 aa11.31□□□□□ -0.6
CPNE3-201ENST00000517354 MRGPRX2Q96LB1 330 aa11.3□□□□□ -0.6
CPNE3-201ENST00000517354 OCSTAMPQ9BR26 566 aa11.3□□□□□ -0.6
CPNE3-201ENST00000517354 TTC24A2A3L6 582 aaPredicted RBP11.29□□□□□ -0.6
CPNE3-201ENST00000517354 VASH1Q7L8A9 365 aaPredicted RBP11.29□□□□□ -0.6
CPNE3-201ENST00000517354 GLMNQ92990 594 aa11.29□□□□□ -0.6
CPNE3-201ENST00000517354 CYP4X1Q8N118 509 aa11.28□□□□□ -0.6
CPNE3-201ENST00000517354 NBPF20Q3BBV1 942 aa11.27□□□□□ -0.61
CPNE3-201ENST00000517354 SLFNL1Q499Z3 407 aa11.27□□□□□ -0.61
CPNE3-201ENST00000517354 TRMT44Q8IYL2 757 aaKnown RBP11.27□□□□□ -0.61
CPNE3-201ENST00000517354 C1QTNF2Q9BXJ5 285 aa11.27□□□□□ -0.61
CPNE3-201ENST00000517354 ALG2Q9H553 416 aa11.27□□□□□ -0.61
CPNE3-201ENST00000517354 CEP126Q9P2H0 1117 aa11.27□□□□□ -0.61
CPNE3-201ENST00000517354 ALDH1A1P00352 501 aa11.26□□□□□ -0.61
CPNE3-201ENST00000517354 SNIP1Q8TAD8 396 aaKnown RBP11.26□□□□□ -0.61
CPNE3-201ENST00000517354 CCDC97Q96F63 343 aaPredicted RBP11.26□□□□□ -0.61
CPNE3-201ENST00000517354 WASF2Q9Y6W5 498 aa11.26□□□□□ -0.61
CPNE3-201ENST00000517354 TNFRSF10AO00220 468 aa11.25□□□□□ -0.61
CPNE3-201ENST00000517354 RNF20Q5VTR2 975 aa11.25□□□□□ -0.61
CPNE3-201ENST00000517354 PKD2L1Q9P0L9 805 aa11.25□□□□□ -0.61
CPNE3-201ENST00000517354 SIAH2O43255 324 aa11.24□□□□□ -0.61
CPNE3-201ENST00000517354 RAB15P59190 212 aa11.24□□□□□ -0.61
CPNE3-201ENST00000517354 KCTD15Q96SI1 283 aaPredicted RBP11.24□□□□□ -0.61
CPNE3-201ENST00000517354 SERPINA10Q9UK55 444 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms