RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 ATAD2Q6PL18 1390 aa18.12■□□□□ 0.49
CLCN3-210ENST00000515420 CDK12Q9NYV4 1490 aaPredicted RBP18.12■□□□□ 0.49
CLCN3-210ENST00000515420 SLC24A1O60721 1099 aa18.1■□□□□ 0.49
CLCN3-210ENST00000515420 LMOD2Q6P5Q4 547 aa18.1■□□□□ 0.49
CLCN3-210ENST00000515420 NWD2Q9ULI1 1742 aa18.09■□□□□ 0.49
CLCN3-210ENST00000515420 SLIT2O94813 1529 aa18.08■□□□□ 0.49
CLCN3-210ENST00000515420 HAP1P54257 671 aaPredicted RBP18.08■□□□□ 0.48
CLCN3-210ENST00000515420 CCER1Q8TC90 406 aaPredicted RBP18.08■□□□□ 0.48
CLCN3-210ENST00000515420 USP21Q9UK80 565 aa18.08■□□□□ 0.48
CLCN3-210ENST00000515420 AKAP12Q02952 1782 aa18.07■□□□□ 0.48
CLCN3-210ENST00000515420 PAK3O75914 559 aaPredicted RBP18.07■□□□□ 0.48
CLCN3-210ENST00000515420 RXRBP28702 533 aa18.07■□□□□ 0.48
CLCN3-210ENST00000515420 PUS7Q96PZ0 661 aaKnown RBP18.07■□□□□ 0.48
CLCN3-210ENST00000515420 QTRT2Q9H974 415 aaKnown RBP18.07■□□□□ 0.48
CLCN3-210ENST00000515420 BCL9LQ86UU0 1499 aa18.07■□□□□ 0.48
CLCN3-210ENST00000515420 ATRNO75882 1429 aa18.06■□□□□ 0.48
CLCN3-210ENST00000515420 USP6P35125 1406 aa18.06■□□□□ 0.48
CLCN3-210ENST00000515420 PLCH1Q4KWH8 1693 aa18.06■□□□□ 0.48
CLCN3-210ENST00000515420 PHRF1Q9P1Y6 1649 aaKnown RBP18.06■□□□□ 0.48
CLCN3-210ENST00000515420 CABLES1Q8TDN4 633 aa18.06■□□□□ 0.48
CLCN3-210ENST00000515420 CABP1Q9NZU7 370 aa18.06■□□□□ 0.48
CLCN3-210ENST00000515420 TRPC5Q9UL62 973 aaPredicted RBP18.06■□□□□ 0.48
CLCN3-210ENST00000515420 RBM6P78332 1123 aaKnown RBP18.05■□□□□ 0.48
CLCN3-210ENST00000515420 ZNF692Q9BU19 519 aaPredicted RBP18.04■□□□□ 0.48
CLCN3-210ENST00000515420 COL14A1Q05707 1796 aaKnown RBP18.04■□□□□ 0.48
CLCN3-210ENST00000515420 TESK2Q96S53 571 aa18.03■□□□□ 0.48
CLCN3-210ENST00000515420 CPSF1Q10570 1443 aaKnown RBP18.03■□□□□ 0.48
CLCN3-210ENST00000515420 SSH2Q76I76 1423 aa18.03■□□□□ 0.48
CLCN3-210ENST00000515420 USP47Q96K76 1375 aa18.03■□□□□ 0.48
CLCN3-210ENST00000515420 ST20-MTHFSA0A0A6YYL1 179 aa18.02■□□□□ 0.48
CLCN3-210ENST00000515420 NRKQ7Z2Y5 1582 aa18.02■□□□□ 0.48
CLCN3-210ENST00000515420 MON2Q7Z3U7 1717 aa18.02■□□□□ 0.48
CLCN3-210ENST00000515420 USP19O94966 1318 aa18.01■□□□□ 0.47
CLCN3-210ENST00000515420 UNC5CLQ8IV45 518 aa18.01■□□□□ 0.47
CLCN3-210ENST00000515420 NINLQ9Y2I6 1382 aa18.01■□□□□ 0.47
CLCN3-210ENST00000515420 ABTB2Q8N961 1025 aa18■□□□□ 0.47
CLCN3-210ENST00000515420 NRAPQ86VF7 1730 aa18■□□□□ 0.47
CLCN3-210ENST00000515420 NLRP13Q86W25 1043 aa17.99■□□□□ 0.47
CLCN3-210ENST00000515420 PIK3C2AO00443 1686 aa17.99■□□□□ 0.47
CLCN3-210ENST00000515420 RGS12O14924 1447 aa17.98■□□□□ 0.47
CLCN3-210ENST00000515420 FAM83GA6ND36 823 aa17.98■□□□□ 0.47
CLCN3-210ENST00000515420 TTC21AQ8NDW8 1320 aa17.98■□□□□ 0.47
CLCN3-210ENST00000515420 CD163L1Q9NR16 1453 aa17.97■□□□□ 0.47
CLCN3-210ENST00000515420 SLIT3O75094 1523 aa17.97■□□□□ 0.47
CLCN3-210ENST00000515420 CPDO75976 1380 aa17.96■□□□□ 0.47
CLCN3-210ENST00000515420 KTN1Q86UP2 1357 aaKnown RBP17.96■□□□□ 0.47
CLCN3-210ENST00000515420 PLEKHG5O94827 1062 aa17.96■□□□□ 0.47
CLCN3-210ENST00000515420 GJD4Q96KN9 370 aaPredicted RBP17.96■□□□□ 0.47
CLCN3-210ENST00000515420 USP54Q70EL1 1684 aa17.96■□□□□ 0.47
CLCN3-210ENST00000515420 GLI3P10071 1580 aa17.96■□□□□ 0.46
CLCN3-210ENST00000515420 VPS72Q15906 364 aa17.95■□□□□ 0.46
CLCN3-210ENST00000515420 PRDM11Q9NQV5 511 aa17.95■□□□□ 0.46
CLCN3-210ENST00000515420 TTC21BQ7Z4L5 1316 aa17.95■□□□□ 0.46
CLCN3-210ENST00000515420 KIAA0232Q92628 1395 aa17.94■□□□□ 0.46
CLCN3-210ENST00000515420 TMF1P82094 1093 aa17.94■□□□□ 0.46
CLCN3-210ENST00000515420 NUTM2GQ5VZR2 741 aa17.94■□□□□ 0.46
CLCN3-210ENST00000515420 TERF2IPQ9NYB0 399 aa17.94■□□□□ 0.46
CLCN3-210ENST00000515420 EDC4Q6P2E9 1401 aaKnown RBP17.93■□□□□ 0.46
CLCN3-210ENST00000515420 CDCA8Q53HL2 280 aa17.93■□□□□ 0.46
CLCN3-210ENST00000515420 HDGFL2Q7Z4V5 671 aaPredicted RBP17.93■□□□□ 0.46
CLCN3-210ENST00000515420 BTG4Q9NY30 223 aa17.93■□□□□ 0.46
CLCN3-210ENST00000515420 LMO7Q8WWI1 1683 aa17.93■□□□□ 0.46
CLCN3-210ENST00000515420 GCP02774 474 aa17.92■□□□□ 0.46
CLCN3-210ENST00000515420 NLRP6P59044 892 aa17.92■□□□□ 0.46
CLCN3-210ENST00000515420 TMC1Q8TDI8 760 aa17.91■□□□□ 0.46
CLCN3-210ENST00000515420 SLC12A5Q9H2X9 1139 aa17.91■□□□□ 0.46
CLCN3-210ENST00000515420 A0A1W2PP64 1363 aa17.91■□□□□ 0.46
CLCN3-210ENST00000515420 USP31Q70CQ4 1352 aa17.9■□□□□ 0.46
CLCN3-210ENST00000515420 ZC3H6P61129 1189 aaKnown RBP17.89■□□□□ 0.45
CLCN3-210ENST00000515420 ONECUT3O60422 494 aaPredicted RBP17.88■□□□□ 0.45
CLCN3-210ENST00000515420 KCNH5Q8NCM2 988 aa17.88■□□□□ 0.45
CLCN3-210ENST00000515420 ANKRD36BQ8N2N9 1353 aa17.88■□□□□ 0.45
CLCN3-210ENST00000515420 AATKQ6ZMQ8 1374 aa17.87■□□□□ 0.45
CLCN3-210ENST00000515420 ABCC6O95255 1503 aa17.87■□□□□ 0.45
CLCN3-210ENST00000515420 CAMTA1Q9Y6Y1 1673 aa17.87■□□□□ 0.45
CLCN3-210ENST00000515420 EIF4G2P78344 907 aaKnown RBP eCLIP17.86■□□□□ 0.45
CLCN3-210ENST00000515420 CHRNA2Q15822 529 aa17.86■□□□□ 0.45
CLCN3-210ENST00000515420 CCDC9Q9Y3X0 531 aaKnown RBP17.86■□□□□ 0.45
CLCN3-210ENST00000515420 SPATA31A5Q5VU36 1347 aa17.86■□□□□ 0.45
CLCN3-210ENST00000515420 SPATA31A7Q8IWB4 1347 aa17.86■□□□□ 0.45
CLCN3-210ENST00000515420 NFAT5O94916 1531 aa17.86■□□□□ 0.45
CLCN3-210ENST00000515420 MYOM1P52179 1685 aa17.86■□□□□ 0.45
CLCN3-210ENST00000515420 COL18A1P39060 1754 aa17.85■□□□□ 0.45
CLCN3-210ENST00000515420 BRWD3Q6RI45 1802 aa17.84■□□□□ 0.45
CLCN3-210ENST00000515420 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.84■□□□□ 0.45
CLCN3-210ENST00000515420 UPF1Q92900 1129 aaKnown RBP eCLIP17.84■□□□□ 0.45
CLCN3-210ENST00000515420 THSD7AQ9UPZ6 1657 aa17.83■□□□□ 0.45
CLCN3-210ENST00000515420 OVOS2A0A0J9YW53 1432 aa17.83■□□□□ 0.45
CLCN3-210ENST00000515420 OVOS2Q6IE36 1432 aa17.83■□□□□ 0.45
CLCN3-210ENST00000515420 COL5A2P05997 1499 aaPredicted RBP17.82■□□□□ 0.44
CLCN3-210ENST00000515420 SPATA31A1Q5TZJ5 1347 aa17.82■□□□□ 0.44
CLCN3-210ENST00000515420 ADRA2BP18089 450 aa17.82■□□□□ 0.44
CLCN3-210ENST00000515420 ARHGEF25Q86VW2 580 aa17.82■□□□□ 0.44
CLCN3-210ENST00000515420 EP400Q96L91 3159 aa17.81■□□□□ 0.44
CLCN3-210ENST00000515420 NME9Q86XW9 330 aa17.81■□□□□ 0.44
CLCN3-210ENST00000515420 SEPT12Q8IYM1 358 aa17.81■□□□□ 0.44
CLCN3-210ENST00000515420 HSPA5P11021 654 aaKnown RBP17.8■□□□□ 0.44
CLCN3-210ENST00000515420 STRN4Q9NRL3 753 aa17.8■□□□□ 0.44
CLCN3-210ENST00000515420 LTN1O94822 1766 aa17.79■□□□□ 0.44
CLCN3-210ENST00000515420 EVA1CP58658 441 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms