RNA–Protein interactions for RNA: ENST00000513946.1

PROM1-216, Transcript of prominin 1, humanhuman

TSL 3

Gene PROM1, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-216ENST00000513946 POLR3EQ9NVU0 708 aa7.65□□□□□ -1.18
PROM1-216ENST00000513946 CLK2P49760 499 aaKnown RBP7.64□□□□□ -1.19
PROM1-216ENST00000513946 SKIV2LQ15477 1246 aaKnown RBP7.64□□□□□ -1.19
PROM1-216ENST00000513946 CTC1Q2NKJ3 1217 aa7.63□□□□□ -1.19
PROM1-216ENST00000513946 HPS1Q92902 700 aa7.63□□□□□ -1.19
PROM1-216ENST00000513946 ZNF511Q8NB15 262 aa7.62□□□□□ -1.19
PROM1-216ENST00000513946 PROCA1Q8NCQ7 364 aaPredicted RBP7.62□□□□□ -1.19
PROM1-216ENST00000513946 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.62□□□□□ -1.19
PROM1-216ENST00000513946 MAP10Q9P2G4 905 aa7.62□□□□□ -1.19
PROM1-216ENST00000513946 NUTM2BA6NNL0 878 aaPredicted RBP7.61□□□□□ -1.19
PROM1-216ENST00000513946 NUTM2EB1AL46 878 aaPredicted RBP7.61□□□□□ -1.19
PROM1-216ENST00000513946 AXIN1O15169 862 aa7.61□□□□□ -1.19
PROM1-216ENST00000513946 LINC01559Q495D7 138 aa7.61□□□□□ -1.19
PROM1-216ENST00000513946 NUTM2DQ5VT03 806 aaPredicted RBP7.61□□□□□ -1.19
PROM1-216ENST00000513946 NUTM2AQ8IVF1 878 aaPredicted RBP7.61□□□□□ -1.19
PROM1-216ENST00000513946 CTHP32929 405 aa7.6□□□□□ -1.19
PROM1-216ENST00000513946 SH3D19Q5HYK7 790 aa7.6□□□□□ -1.19
PROM1-216ENST00000513946 MPNDQ8N594 471 aa7.6□□□□□ -1.19
PROM1-216ENST00000513946 EHBP1Q8NDI1 1231 aa7.6□□□□□ -1.19
PROM1-216ENST00000513946 ZNF775Q96BV0 537 aaPredicted RBP7.6□□□□□ -1.19
PROM1-216ENST00000513946 VARSP26640 1264 aaKnown RBP7.59□□□□□ -1.19
PROM1-216ENST00000513946 CTDSPL2Q05D32 466 aa7.59□□□□□ -1.19
PROM1-216ENST00000513946 PPP2R2DQ66LE6 453 aa7.59□□□□□ -1.19
PROM1-216ENST00000513946 DDRGK1Q96HY6 314 aa7.59□□□□□ -1.19
PROM1-216ENST00000513946 ALDH1A1P00352 501 aa7.58□□□□□ -1.2
PROM1-216ENST00000513946 C4orf48Q5BLP8 95 aa7.58□□□□□ -1.2
PROM1-216ENST00000513946 FOXJ1Q92949 421 aa7.58□□□□□ -1.2
PROM1-216ENST00000513946 GMPR2Q9P2T1 348 aaKnown RBP7.57□□□□□ -1.2
PROM1-216ENST00000513946 TSC1Q92574 1164 aa7.56□□□□□ -1.2
PROM1-216ENST00000513946 SH3RF1Q7Z6J0 888 aa7.55□□□□□ -1.2
PROM1-216ENST00000513946 CDK15Q96Q40 435 aa7.55□□□□□ -1.2
PROM1-216ENST00000513946 ATP13A2Q9NQ11 1180 aa7.55□□□□□ -1.2
PROM1-216ENST00000513946 HELBQ8NG08 1087 aaPredicted RBP7.53□□□□□ -1.2
PROM1-216ENST00000513946 LRRN4Q8WUT4 740 aa7.53□□□□□ -1.2
PROM1-216ENST00000513946 KLF16Q9BXK1 252 aaPredicted RBP7.53□□□□□ -1.2
PROM1-216ENST00000513946 TLL2Q9Y6L7 1015 aa7.53□□□□□ -1.2
PROM1-216ENST00000513946 GRM5P41594 1212 aa7.52□□□□□ -1.21
PROM1-216ENST00000513946 LCE2AQ5TA79 106 aaPredicted RBP7.52□□□□□ -1.21
PROM1-216ENST00000513946 SH3BP5LQ7L8J4 393 aa7.52□□□□□ -1.21
PROM1-216ENST00000513946 GOPCQ9HD26 462 aa7.52□□□□□ -1.21
PROM1-216ENST00000513946 BRPF1P55201 1214 aaPredicted RBP7.51□□□□□ -1.21
PROM1-216ENST00000513946 ARMC2Q8NEN0 867 aa7.51□□□□□ -1.21
PROM1-216ENST00000513946 FAM174AQ8TBP5 190 aa7.51□□□□□ -1.21
PROM1-216ENST00000513946 C1QTNF2Q9BXJ5 285 aa7.51□□□□□ -1.21
PROM1-216ENST00000513946 WASF2Q9Y6W5 498 aa7.51□□□□□ -1.21
PROM1-216ENST00000513946 C11orf95C9JLR9 678 aaPredicted RBP7.5□□□□□ -1.21
PROM1-216ENST00000513946 SNRPBP14678 240 aaKnown RBP7.5□□□□□ -1.21
PROM1-216ENST00000513946 TRIM46Q7Z4K8 759 aa7.5□□□□□ -1.21
PROM1-216ENST00000513946 BPHLQ86WA6 291 aaPredicted RBP7.5□□□□□ -1.21
PROM1-216ENST00000513946 CAPN5O15484 640 aaPredicted RBP7.49□□□□□ -1.21
PROM1-216ENST00000513946 NNTQ13423 1086 aa7.49□□□□□ -1.21
PROM1-216ENST00000513946 NEUROD2Q15784 382 aa7.49□□□□□ -1.21
PROM1-216ENST00000513946 IL27Q8NEV9 243 aa7.49□□□□□ -1.21
PROM1-216ENST00000513946 ADH1CP00326 375 aa7.48□□□□□ -1.21
PROM1-216ENST00000513946 RFC5P40937 340 aa7.48□□□□□ -1.21
PROM1-216ENST00000513946 NR6A1Q15406 480 aa7.48□□□□□ -1.21
PROM1-216ENST00000513946 EPS8L1Q8TE68 723 aa7.48□□□□□ -1.21
PROM1-216ENST00000513946 GPKOWQ92917 476 aaPredicted RBP eCLIP7.48□□□□□ -1.21
PROM1-216ENST00000513946 TRIM47Q96LD4 638 aa7.48□□□□□ -1.21
PROM1-216ENST00000513946 NR3C2P08235 984 aa7.47□□□□□ -1.21
PROM1-216ENST00000513946 TIMP2P16035 220 aa7.47□□□□□ -1.21
PROM1-216ENST00000513946 PDXDC2PQ6P474 469 aa7.47□□□□□ -1.21
PROM1-216ENST00000513946 TRMT44Q8IYL2 757 aaKnown RBP7.47□□□□□ -1.21
PROM1-216ENST00000513946 OCSTAMPQ9BR26 566 aa7.47□□□□□ -1.21
PROM1-216ENST00000513946 AP1G2O75843 785 aa7.46□□□□□ -1.22
PROM1-216ENST00000513946 NR5A1Q13285 461 aa7.46□□□□□ -1.22
PROM1-216ENST00000513946 AGERQ15109 404 aa7.46□□□□□ -1.22
PROM1-216ENST00000513946 TPRNQ4KMQ1 711 aa7.46□□□□□ -1.22
PROM1-216ENST00000513946 TREML4Q6UXN2 200 aa7.46□□□□□ -1.22
PROM1-216ENST00000513946 SENP2Q9HC62 589 aa7.46□□□□□ -1.22
PROM1-216ENST00000513946 HMX1Q9NP08 348 aaPredicted RBP7.46□□□□□ -1.22
PROM1-216ENST00000513946 FKBPLQ9UIM3 349 aa7.46□□□□□ -1.22
PROM1-216ENST00000513946 ARID5BQ14865 1188 aa7.45□□□□□ -1.22
PROM1-216ENST00000513946 NBPF14Q5TI25 921 aa7.45□□□□□ -1.22
PROM1-216ENST00000513946 MAP4K5Q9Y4K4 846 aa7.45□□□□□ -1.22
PROM1-216ENST00000513946 BMP1P13497 986 aa7.44□□□□□ -1.22
PROM1-216ENST00000513946 WDR4P57081 412 aaKnown RBP7.44□□□□□ -1.22
PROM1-216ENST00000513946 ERFEQ4G0M1 354 aa7.44□□□□□ -1.22
PROM1-216ENST00000513946 USP17L8P0C7I0 530 aa7.43□□□□□ -1.22
PROM1-216ENST00000513946 NFX1Q12986 1120 aaKnown RBP7.43□□□□□ -1.22
PROM1-216ENST00000513946 KIFC2Q96AC6 838 aa7.43□□□□□ -1.22
PROM1-216ENST00000513946 PCMTD1Q96MG8 357 aaPredicted RBP7.43□□□□□ -1.22
PROM1-216ENST00000513946 ATP1B4Q9UN42 357 aaPredicted RBP7.43□□□□□ -1.22
PROM1-216ENST00000513946 LCE2CQ5TA81 110 aa7.42□□□□□ -1.22
PROM1-216ENST00000513946 ITPKCQ96DU7 683 aa7.42□□□□□ -1.22
PROM1-216ENST00000513946 ZFP42Q96MM3 310 aa7.42□□□□□ -1.22
PROM1-216ENST00000513946 TRIM34Q9BYJ4 488 aa7.42□□□□□ -1.22
PROM1-216ENST00000513946 ZFAND3Q9H8U3 227 aa7.42□□□□□ -1.22
PROM1-216ENST00000513946 ZC3H4Q9UPT8 1303 aaKnown RBP7.42□□□□□ -1.22
PROM1-216ENST00000513946 MAGEB6P1A0A0J9YX57 407 aa7.41□□□□□ -1.22
PROM1-216ENST00000513946 ZIC2O95409 532 aaPredicted RBP7.41□□□□□ -1.22
PROM1-216ENST00000513946 TMEM259Q4ZIN3 620 aa7.41□□□□□ -1.22
PROM1-216ENST00000513946 MRPL14Q6P1L8 145 aaKnown RBP7.41□□□□□ -1.22
PROM1-216ENST00000513946 VASH1Q7L8A9 365 aaPredicted RBP7.4□□□□□ -1.22
PROM1-216ENST00000513946 ARHGAP9Q9BRR9 750 aa7.4□□□□□ -1.22
PROM1-216ENST00000513946 GPSM3Q9Y4H4 160 aa7.4□□□□□ -1.22
PROM1-216ENST00000513946 GJD4Q96KN9 370 aaPredicted RBP7.39□□□□□ -1.23
PROM1-216ENST00000513946 CARD14Q9BXL6 1004 aa7.39□□□□□ -1.23
PROM1-216ENST00000513946 TERTO14746 1132 aaKnown RBP7.38□□□□□ -1.23
PROM1-216ENST00000513946 WFS1O76024 890 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms