RNA–Protein interactions for RNA: ENST00000509357.5

PDLIM5-213, Transcript of PDZ and LIM domain 5, humanhuman

TSL 5

Gene PDLIM5, Length 554 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-213ENST00000509357 TRPM3Q9HCF6 1732 aaPredicted RBP12.37□□□□□ -0.43
PDLIM5-213ENST00000509357 ST20-MTHFSA0A0A6YYL1 179 aa12.37□□□□□ -0.43
PDLIM5-213ENST00000509357 UNC5CLQ8IV45 518 aa12.37□□□□□ -0.43
PDLIM5-213ENST00000509357 SBNO2Q9Y2G9 1366 aa12.37□□□□□ -0.43
PDLIM5-213ENST00000509357 MYOM1P52179 1685 aa12.37□□□□□ -0.43
PDLIM5-213ENST00000509357 PLEKHG3A1L390 1219 aa12.36□□□□□ -0.43
PDLIM5-213ENST00000509357 NUTM2GQ5VZR2 741 aa12.36□□□□□ -0.43
PDLIM5-213ENST00000509357 GJD4Q96KN9 370 aaPredicted RBP12.35□□□□□ -0.43
PDLIM5-213ENST00000509357 CABP1Q9NZU7 370 aa12.35□□□□□ -0.43
PDLIM5-213ENST00000509357 CDK12Q9NYV4 1490 aaPredicted RBP12.34□□□□□ -0.43
PDLIM5-213ENST00000509357 AKAP12Q02952 1782 aa12.34□□□□□ -0.43
PDLIM5-213ENST00000509357 FAM83GA6ND36 823 aa12.34□□□□□ -0.43
PDLIM5-213ENST00000509357 ABTB2Q8N961 1025 aa12.34□□□□□ -0.43
PDLIM5-213ENST00000509357 PPIP5K1Q6PFW1 1433 aa12.34□□□□□ -0.43
PDLIM5-213ENST00000509357 BCL9LQ86UU0 1499 aa12.34□□□□□ -0.43
PDLIM5-213ENST00000509357 CD163L1Q9NR16 1453 aa12.34□□□□□ -0.43
PDLIM5-213ENST00000509357 C11orf95C9JLR9 678 aaPredicted RBP12.33□□□□□ -0.44
PDLIM5-213ENST00000509357 HSPA5P11021 654 aaKnown RBP12.33□□□□□ -0.44
PDLIM5-213ENST00000509357 RGS12O14924 1447 aa12.33□□□□□ -0.44
PDLIM5-213ENST00000509357 ATRNO75882 1429 aa12.33□□□□□ -0.44
PDLIM5-213ENST00000509357 MARF1Q9Y4F3 1742 aaKnown RBP12.32□□□□□ -0.44
PDLIM5-213ENST00000509357 NRKQ7Z2Y5 1582 aa12.32□□□□□ -0.44
PDLIM5-213ENST00000509357 A0A0G2JS52 829 aa12.32□□□□□ -0.44
PDLIM5-213ENST00000509357 MYT1Q01538 1121 aa12.32□□□□□ -0.44
PDLIM5-213ENST00000509357 UPF1Q92900 1129 aaKnown RBP eCLIP12.32□□□□□ -0.44
PDLIM5-213ENST00000509357 PRDM11Q9NQV5 511 aa12.32□□□□□ -0.44
PDLIM5-213ENST00000509357 BTG4Q9NY30 223 aa12.32□□□□□ -0.44
PDLIM5-213ENST00000509357 ALS2Q96Q42 1657 aa12.32□□□□□ -0.44
PDLIM5-213ENST00000509357 POLR3AO14802 1390 aaPredicted RBP12.31□□□□□ -0.44
PDLIM5-213ENST00000509357 CRYBG1Q9Y4K1 1723 aa12.31□□□□□ -0.44
PDLIM5-213ENST00000509357 ZC3H6P61129 1189 aaKnown RBP12.31□□□□□ -0.44
PDLIM5-213ENST00000509357 MON2Q7Z3U7 1717 aa12.31□□□□□ -0.44
PDLIM5-213ENST00000509357 VPS72Q15906 364 aa12.3□□□□□ -0.44
PDLIM5-213ENST00000509357 NLRP13Q86W25 1043 aa12.3□□□□□ -0.44
PDLIM5-213ENST00000509357 ABCA3Q99758 1704 aa12.3□□□□□ -0.44
PDLIM5-213ENST00000509357 SLIT2O94813 1529 aa12.3□□□□□ -0.44
PDLIM5-213ENST00000509357 ZBTB7CA1YPR0 619 aa12.29□□□□□ -0.44
PDLIM5-213ENST00000509357 TMC1Q8TDI8 760 aa12.29□□□□□ -0.44
PDLIM5-213ENST00000509357 ATAD2Q6PL18 1390 aa12.29□□□□□ -0.44
PDLIM5-213ENST00000509357 EVA1CP58658 441 aa12.28□□□□□ -0.44
PDLIM5-213ENST00000509357 NLRP6P59044 892 aa12.28□□□□□ -0.44
PDLIM5-213ENST00000509357 CHRNA2Q15822 529 aa12.28□□□□□ -0.44
PDLIM5-213ENST00000509357 ZNF692Q9BU19 519 aaPredicted RBP12.28□□□□□ -0.44
PDLIM5-213ENST00000509357 STRN4Q9NRL3 753 aa12.28□□□□□ -0.44
PDLIM5-213ENST00000509357 KIAA0232Q92628 1395 aa12.28□□□□□ -0.44
PDLIM5-213ENST00000509357 SEPT12Q8IYM1 358 aa12.27□□□□□ -0.45
PDLIM5-213ENST00000509357 SSH2Q76I76 1423 aa12.27□□□□□ -0.45
PDLIM5-213ENST00000509357 PIK3C2AO00443 1686 aa12.26□□□□□ -0.45
PDLIM5-213ENST00000509357 BRD4O60885 1362 aaPredicted RBP12.26□□□□□ -0.45
PDLIM5-213ENST00000509357 CPSF1Q10570 1443 aaKnown RBP12.26□□□□□ -0.45
PDLIM5-213ENST00000509357 GCP02774 474 aa12.25□□□□□ -0.45
PDLIM5-213ENST00000509357 EIF4G2P78344 907 aaKnown RBP eCLIP12.25□□□□□ -0.45
PDLIM5-213ENST00000509357 FAM98CQ17RN3 349 aaKnown RBP12.25□□□□□ -0.45
PDLIM5-213ENST00000509357 USP6P35125 1406 aa12.25□□□□□ -0.45
PDLIM5-213ENST00000509357 SOX12O15370 315 aa12.24□□□□□ -0.45
PDLIM5-213ENST00000509357 SLC24A1O60721 1099 aa12.24□□□□□ -0.45
PDLIM5-213ENST00000509357 HDGFL2Q7Z4V5 671 aaPredicted RBP12.24□□□□□ -0.45
PDLIM5-213ENST00000509357 KTN1Q86UP2 1357 aaKnown RBP12.24□□□□□ -0.45
PDLIM5-213ENST00000509357 SLC12A5Q9H2X9 1139 aa12.24□□□□□ -0.45
PDLIM5-213ENST00000509357 PHRF1Q9P1Y6 1649 aaKnown RBP12.23□□□□□ -0.45
PDLIM5-213ENST00000509357 TTC21BQ7Z4L5 1316 aa12.23□□□□□ -0.45
PDLIM5-213ENST00000509357 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.23□□□□□ -0.45
PDLIM5-213ENST00000509357 USP35Q9P2H5 1018 aa12.23□□□□□ -0.45
PDLIM5-213ENST00000509357 A0A1W2PP64 1363 aa12.22□□□□□ -0.45
PDLIM5-213ENST00000509357 USP19O94966 1318 aa12.22□□□□□ -0.45
PDLIM5-213ENST00000509357 SPATA31A5Q5VU36 1347 aa12.22□□□□□ -0.45
PDLIM5-213ENST00000509357 SPATA31A7Q8IWB4 1347 aa12.22□□□□□ -0.45
PDLIM5-213ENST00000509357 KRT27Q7Z3Y8 459 aa12.22□□□□□ -0.45
PDLIM5-213ENST00000509357 TERF2IPQ9NYB0 399 aa12.22□□□□□ -0.45
PDLIM5-213ENST00000509357 USP54Q70EL1 1684 aa12.22□□□□□ -0.45
PDLIM5-213ENST00000509357 COL14A1Q05707 1796 aaKnown RBP12.21□□□□□ -0.45
PDLIM5-213ENST00000509357 TTC21AQ8NDW8 1320 aa12.21□□□□□ -0.45
PDLIM5-213ENST00000509357 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.21□□□□□ -0.45
PDLIM5-213ENST00000509357 ONECUT3O60422 494 aaPredicted RBP12.21□□□□□ -0.45
PDLIM5-213ENST00000509357 SF3B2Q13435 895 aaKnown RBP12.21□□□□□ -0.45
PDLIM5-213ENST00000509357 PLCH1Q4KWH8 1693 aa12.21□□□□□ -0.45
PDLIM5-213ENST00000509357 GLI3P10071 1580 aa12.21□□□□□ -0.46
PDLIM5-213ENST00000509357 NWD2Q9ULI1 1742 aa12.2□□□□□ -0.46
PDLIM5-213ENST00000509357 KIF7Q2M1P5 1343 aa12.2□□□□□ -0.46
PDLIM5-213ENST00000509357 TMF1P82094 1093 aa12.2□□□□□ -0.46
PDLIM5-213ENST00000509357 CCDC125Q86Z20 511 aa12.2□□□□□ -0.46
PDLIM5-213ENST00000509357 KCNH5Q8NCM2 988 aa12.2□□□□□ -0.46
PDLIM5-213ENST00000509357 CPDO75976 1380 aa12.19□□□□□ -0.46
PDLIM5-213ENST00000509357 SPATA31A1Q5TZJ5 1347 aa12.19□□□□□ -0.46
PDLIM5-213ENST00000509357 WASHC2AQ641Q2 1341 aa12.19□□□□□ -0.46
PDLIM5-213ENST00000509357 LARP1Q6PKG0 1096 aaKnown RBP12.19□□□□□ -0.46
PDLIM5-213ENST00000509357 PUS7Q96PZ0 661 aaKnown RBP12.19□□□□□ -0.46
PDLIM5-213ENST00000509357 CARD14Q9BXL6 1004 aa12.18□□□□□ -0.46
PDLIM5-213ENST00000509357 ZRANB1Q9UGI0 708 aa12.18□□□□□ -0.46
PDLIM5-213ENST00000509357 KIF20BQ96Q89 1820 aa12.18□□□□□ -0.46
PDLIM5-213ENST00000509357 CSB-PGBD3P0DP91 1061 aa12.17□□□□□ -0.46
PDLIM5-213ENST00000509357 CDCA8Q53HL2 280 aa12.17□□□□□ -0.46
PDLIM5-213ENST00000509357 NME9Q86XW9 330 aa12.17□□□□□ -0.46
PDLIM5-213ENST00000509357 TCP11L2Q8N4U5 519 aa12.17□□□□□ -0.46
PDLIM5-213ENST00000509357 CCDC7Q96M83 1385 aa12.17□□□□□ -0.46
PDLIM5-213ENST00000509357 PDE3BQ13370 1112 aa12.16□□□□□ -0.46
PDLIM5-213ENST00000509357 FAM182BQ5T319 152 aa12.16□□□□□ -0.46
PDLIM5-213ENST00000509357 TOM1L2Q6ZVM7 507 aa12.16□□□□□ -0.46
PDLIM5-213ENST00000509357 AATKQ6ZMQ8 1374 aa12.16□□□□□ -0.46
PDLIM5-213ENST00000509357 ANKRD36BQ8N2N9 1353 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms