RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 CCDC9Q9Y3X0 531 aaKnown RBP7.18□□□□□ -1.26
USP53-204ENST00000507906 A0A0G2JS52 829 aa7.17□□□□□ -1.26
USP53-204ENST00000507906 USB1Q9BQ65 265 aaKnown RBP7.17□□□□□ -1.26
USP53-204ENST00000507906 WBP1LQ9NX94 342 aa7.17□□□□□ -1.26
USP53-204ENST00000507906 MAFBQ9Y5Q3 323 aaPredicted RBP7.17□□□□□ -1.26
USP53-204ENST00000507906 F12P00748 615 aaPredicted RBP7.16□□□□□ -1.26
USP53-204ENST00000507906 Q3C1V9 767 aa7.16□□□□□ -1.26
USP53-204ENST00000507906 MAP10Q9P2G4 905 aa7.16□□□□□ -1.26
USP53-204ENST00000507906 TMEM88BA6NKF7 163 aa7.15□□□□□ -1.26
USP53-204ENST00000507906 NR1H3Q13133 447 aa7.15□□□□□ -1.26
USP53-204ENST00000507906 SEMA3FQ13275 785 aa7.15□□□□□ -1.26
USP53-204ENST00000507906 SOWAHBA6NEL2 793 aa7.14□□□□□ -1.27
USP53-204ENST00000507906 KANK4Q5T7N3 995 aaPredicted RBP7.14□□□□□ -1.27
USP53-204ENST00000507906 FAM160A2Q8N612 972 aaPredicted RBP7.14□□□□□ -1.27
USP53-204ENST00000507906 OCSTAMPQ9BR26 566 aa7.14□□□□□ -1.27
USP53-204ENST00000507906 HPS5Q9UPZ3 1129 aa7.14□□□□□ -1.27
USP53-204ENST00000507906 SOX11P35716 441 aa7.13□□□□□ -1.27
USP53-204ENST00000507906 PPP4CP60510 307 aa7.13□□□□□ -1.27
USP53-204ENST00000507906 RGS22Q8NE09 1264 aa7.13□□□□□ -1.27
USP53-204ENST00000507906 IRX2Q9BZI1 471 aaPredicted RBP7.13□□□□□ -1.27
USP53-204ENST00000507906 FKBPLQ9UIM3 349 aa7.13□□□□□ -1.27
USP53-204ENST00000507906 SALL2Q9Y467 1007 aaPredicted RBP7.13□□□□□ -1.27
USP53-204ENST00000507906 ATP9BO43861 1147 aa7.12□□□□□ -1.27
USP53-204ENST00000507906 ATG7O95352 703 aa7.12□□□□□ -1.27
USP53-204ENST00000507906 CSB-PGBD3P0DP91 1061 aa7.12□□□□□ -1.27
USP53-204ENST00000507906 FAM174AQ8TBP5 190 aa7.12□□□□□ -1.27
USP53-204ENST00000507906 ZBBXA8MT70 800 aa7.11□□□□□ -1.27
USP53-204ENST00000507906 JUNDP17535 347 aa7.11□□□□□ -1.27
USP53-204ENST00000507906 EIF4G2P78344 907 aaKnown RBP eCLIP7.11□□□□□ -1.27
USP53-204ENST00000507906 PRDM9Q9NQV7 894 aa7.11□□□□□ -1.27
USP53-204ENST00000507906 MTMR7Q9Y216 660 aa7.11□□□□□ -1.27
USP53-204ENST00000507906 USTQ9Y2C2 406 aa7.11□□□□□ -1.27
USP53-204ENST00000507906 FMNL1O95466 1100 aaPredicted RBP7.1□□□□□ -1.27
USP53-204ENST00000507906 BRD1O95696 1058 aa7.1□□□□□ -1.27
USP53-204ENST00000507906 TSR3Q9UJK0 312 aaKnown RBP7.1□□□□□ -1.27
USP53-204ENST00000507906 ZMIZ1Q9ULJ6 1067 aa7.1□□□□□ -1.27
USP53-204ENST00000507906 PCDHB3Q9Y5E6 796 aa7.1□□□□□ -1.27
USP53-204ENST00000507906 PTPRNQ16849 979 aa7.09□□□□□ -1.27
USP53-204ENST00000507906 IFFO2Q5TF58 517 aa7.09□□□□□ -1.27
USP53-204ENST00000507906 DEPDC4Q8N2C3 294 aa7.09□□□□□ -1.27
USP53-204ENST00000507906 STK32AQ8WU08 396 aa7.09□□□□□ -1.27
USP53-204ENST00000507906 SLAIN2Q9P270 581 aa7.09□□□□□ -1.27
USP53-204ENST00000507906 NR1I2O75469 434 aa7.08□□□□□ -1.28
USP53-204ENST00000507906 DXOO77932 396 aaKnown RBP7.08□□□□□ -1.28
USP53-204ENST00000507906 ITGBL1O95965 494 aaPredicted RBP7.08□□□□□ -1.28
USP53-204ENST00000507906 CTHP32929 405 aa7.08□□□□□ -1.28
USP53-204ENST00000507906 MFAP1P55081 439 aaKnown RBP7.08□□□□□ -1.28
USP53-204ENST00000507906 TSGA10IPQ3SY00 556 aa7.08□□□□□ -1.28
USP53-204ENST00000507906 TMCO4Q5TGY1 634 aa7.08□□□□□ -1.28
USP53-204ENST00000507906 PNMA1Q8ND90 353 aa7.08□□□□□ -1.28
USP53-204ENST00000507906 PRR14Q9BWN1 585 aa7.08□□□□□ -1.28
USP53-204ENST00000507906 VRTNQ9H8Y1 702 aa7.08□□□□□ -1.28
USP53-204ENST00000507906 EVA1BQ9NVM1 165 aa7.08□□□□□ -1.28
USP53-204ENST00000507906 USP17L3A6NCW0 530 aa7.07□□□□□ -1.28
USP53-204ENST00000507906 USP17L4A6NCW7 530 aa7.07□□□□□ -1.28
USP53-204ENST00000507906 COPS2P61201 443 aa7.07□□□□□ -1.28
USP53-204ENST00000507906 FOXD4L5Q5VV16 416 aaPredicted RBP7.07□□□□□ -1.28
USP53-204ENST00000507906 PTCRAQ6ISU1 281 aaPredicted RBP7.07□□□□□ -1.28
USP53-204ENST00000507906 USP17L2Q6R6M4 530 aa7.07□□□□□ -1.28
USP53-204ENST00000507906 USP17L1Q7RTZ2 530 aa7.07□□□□□ -1.28
USP53-204ENST00000507906 PHTF2Q8N3S3 785 aa7.07□□□□□ -1.28
USP53-204ENST00000507906 FOXD4L4Q8WXT5 416 aaPredicted RBP7.07□□□□□ -1.28
USP53-204ENST00000507906 ZNF428Q96B54 188 aa7.07□□□□□ -1.28
USP53-204ENST00000507906 CEP126Q9P2H0 1117 aa7.07□□□□□ -1.28
USP53-204ENST00000507906 SKIP12755 728 aa7.06□□□□□ -1.28
USP53-204ENST00000507906 RANGAP1P46060 587 aaPredicted RBP7.06□□□□□ -1.28
USP53-204ENST00000507906 MMP16P51512 607 aa7.06□□□□□ -1.28
USP53-204ENST00000507906 KCNC4Q03721 635 aa7.06□□□□□ -1.28
USP53-204ENST00000507906 PDE4CQ08493 712 aa7.06□□□□□ -1.28
USP53-204ENST00000507906 KCNA1Q09470 495 aa7.06□□□□□ -1.28
USP53-204ENST00000507906 TMEM164Q5U3C3 297 aa7.06□□□□□ -1.28
USP53-204ENST00000507906 PHLDB3Q6NSJ2 640 aa7.06□□□□□ -1.28
USP53-204ENST00000507906 SPSB2Q99619 263 aa7.06□□□□□ -1.28
USP53-204ENST00000507906 USP17L5A8MUK1 530 aa7.05□□□□□ -1.28
USP53-204ENST00000507906 TLL1O43897 1013 aa7.05□□□□□ -1.28
USP53-204ENST00000507906 CCNYL3P0C7X3 344 aa7.05□□□□□ -1.28
USP53-204ENST00000507906 KCNH2Q12809 1159 aa7.05□□□□□ -1.28
USP53-204ENST00000507906 MSS51Q4VC12 460 aa7.05□□□□□ -1.28
USP53-204ENST00000507906 CRTC2Q53ET0 693 aaPredicted RBP7.05□□□□□ -1.28
USP53-204ENST00000507906 NFATC2IPQ8NCF5 419 aa7.05□□□□□ -1.28
USP53-204ENST00000507906 IVNS1ABPQ9Y6Y0 642 aa7.05□□□□□ -1.28
USP53-204ENST00000507906 FAM69CQ0P6D2 419 aa7.04□□□□□ -1.28
USP53-204ENST00000507906 NUDT12Q9BQG2 462 aa7.04□□□□□ -1.28
USP53-204ENST00000507906 ZC3H4Q9UPT8 1303 aaKnown RBP7.03□□□□□ -1.28
USP53-204ENST00000507906 ELOAQ14241 798 aaKnown RBP7.03□□□□□ -1.28
USP53-204ENST00000507906 PDXDC2PQ6P474 469 aa7.03□□□□□ -1.28
USP53-204ENST00000507906 PLEKHM2Q8IWE5 1019 aa7.03□□□□□ -1.28
USP53-204ENST00000507906 NOVA2Q9UNW9 492 aaKnown RBP7.03□□□□□ -1.28
USP53-204ENST00000507906 RGS20O76081 388 aa7.02□□□□□ -1.29
USP53-204ENST00000507906 NCOA4Q13772 614 aa7.02□□□□□ -1.29
USP53-204ENST00000507906 Q6ZNB5 142 aa7.02□□□□□ -1.29
USP53-204ENST00000507906 ADAM32Q8TC27 787 aa7.02□□□□□ -1.29
USP53-204ENST00000507906 MKRN1Q9UHC7 482 aaKnown RBP7.02□□□□□ -1.29
USP53-204ENST00000507906 CHIC2Q9UKJ5 165 aa7.02□□□□□ -1.29
USP53-204ENST00000507906 PCDHB9Q9Y5E1 797 aa7.02□□□□□ -1.29
USP53-204ENST00000507906 PTK2Q05397 1052 aa7.01□□□□□ -1.29
USP53-204ENST00000507906 PTK7Q13308 1070 aa7.01□□□□□ -1.29
USP53-204ENST00000507906 NYAP1Q6ZVC0 841 aa7.01□□□□□ -1.29
USP53-204ENST00000507906 SH3BP5LQ7L8J4 393 aa7.01□□□□□ -1.29
USP53-204ENST00000507906 ZNF516Q92618 1163 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms