RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 CLSPNQ9HAW4 1339 aa18.72■□□□□ 0.59
TCOF1-209ENST00000506630 ARHGEF10O15013 1369 aa18.71■□□□□ 0.59
TCOF1-209ENST00000506630 TULP4Q9NRJ4 1543 aa18.71■□□□□ 0.59
TCOF1-209ENST00000506630 BAG6P46379 1132 aa18.71■□□□□ 0.59
TCOF1-209ENST00000506630 SBNO1A3KN83 1393 aa18.7■□□□□ 0.58
TCOF1-209ENST00000506630 CCER1Q8TC90 406 aaPredicted RBP18.7■□□□□ 0.58
TCOF1-209ENST00000506630 EIF3AQ14152 1382 aaKnown RBP18.69■□□□□ 0.58
TCOF1-209ENST00000506630 ANKARQ7Z5J8 1434 aa18.69■□□□□ 0.58
TCOF1-209ENST00000506630 CENPJQ9HC77 1338 aaPredicted RBP18.69■□□□□ 0.58
TCOF1-209ENST00000506630 TOPAZ1Q8N9V7 1692 aa18.67■□□□□ 0.58
TCOF1-209ENST00000506630 FAM83GA6ND36 823 aa18.67■□□□□ 0.58
TCOF1-209ENST00000506630 WASLO00401 505 aaPredicted RBP18.67■□□□□ 0.58
TCOF1-209ENST00000506630 BRWD3Q6RI45 1802 aa18.67■□□□□ 0.58
TCOF1-209ENST00000506630 GPRASP1Q5JY77 1395 aa18.67■□□□□ 0.58
TCOF1-209ENST00000506630 PSDA5PKW4 1024 aaPredicted RBP18.65■□□□□ 0.58
TCOF1-209ENST00000506630 FAM98CQ17RN3 349 aaKnown RBP18.65■□□□□ 0.58
TCOF1-209ENST00000506630 NWD2Q9ULI1 1742 aa18.65■□□□□ 0.58
TCOF1-209ENST00000506630 ATP7BP35670 1465 aa18.65■□□□□ 0.58
TCOF1-209ENST00000506630 TRPM3Q9HCF6 1732 aaPredicted RBP18.64■□□□□ 0.57
TCOF1-209ENST00000506630 CARD11Q9BXL7 1154 aa18.64■□□□□ 0.57
TCOF1-209ENST00000506630 BTG4Q9NY30 223 aa18.64■□□□□ 0.57
TCOF1-209ENST00000506630 LRP5O75197 1615 aa18.63■□□□□ 0.57
TCOF1-209ENST00000506630 PLCH1Q4KWH8 1693 aa18.63■□□□□ 0.57
TCOF1-209ENST00000506630 ABCA3Q99758 1704 aa18.63■□□□□ 0.57
TCOF1-209ENST00000506630 CDK19Q9BWU1 502 aa18.61■□□□□ 0.57
TCOF1-209ENST00000506630 EN1Q05925 392 aaPredicted RBP18.59■□□□□ 0.57
TCOF1-209ENST00000506630 ALS2Q96Q42 1657 aa18.59■□□□□ 0.57
TCOF1-209ENST00000506630 SRPK2P78362 688 aaKnown RBP18.58■□□□□ 0.56
TCOF1-209ENST00000506630 NUDT16Q96DE0 195 aaKnown RBP18.58■□□□□ 0.56
TCOF1-209ENST00000506630 TIMELESSQ9UNS1 1208 aa18.58■□□□□ 0.56
TCOF1-209ENST00000506630 SPATA31A5Q5VU36 1347 aa18.56■□□□□ 0.56
TCOF1-209ENST00000506630 SPATA31A7Q8IWB4 1347 aa18.56■□□□□ 0.56
TCOF1-209ENST00000506630 FAM182BQ5T319 152 aa18.56■□□□□ 0.56
TCOF1-209ENST00000506630 EVC2Q86UK5 1308 aa18.55■□□□□ 0.56
TCOF1-209ENST00000506630 CRYBG1Q9Y4K1 1723 aa18.55■□□□□ 0.56
TCOF1-209ENST00000506630 R3HDM1Q15032 1099 aaKnown RBP18.55■□□□□ 0.56
TCOF1-209ENST00000506630 CABP2Q9NPB3 220 aa18.55■□□□□ 0.56
TCOF1-209ENST00000506630 PRDM11Q9NQV5 511 aa18.55■□□□□ 0.56
TCOF1-209ENST00000506630 PAK3O75914 559 aaPredicted RBP18.54■□□□□ 0.56
TCOF1-209ENST00000506630 NGDNQ8NEJ9 315 aaKnown RBP18.54■□□□□ 0.56
TCOF1-209ENST00000506630 COL14A1Q05707 1796 aaKnown RBP18.53■□□□□ 0.56
TCOF1-209ENST00000506630 PPIP5K1Q6PFW1 1433 aa18.53■□□□□ 0.56
TCOF1-209ENST00000506630 SBNO2Q9Y2G9 1366 aa18.53■□□□□ 0.56
TCOF1-209ENST00000506630 CCDC61Q9Y6R9 512 aa18.52■□□□□ 0.56
TCOF1-209ENST00000506630 NRAPQ86VF7 1730 aa18.52■□□□□ 0.55
TCOF1-209ENST00000506630 AKAP12Q02952 1782 aa18.51■□□□□ 0.55
TCOF1-209ENST00000506630 DISP2A7MBM2 1401 aa18.5■□□□□ 0.55
TCOF1-209ENST00000506630 RGPD1P0DJD0 1748 aa18.5■□□□□ 0.55
TCOF1-209ENST00000506630 EZH2Q15910 746 aaKnown RBP18.5■□□□□ 0.55
TCOF1-209ENST00000506630 NUTM2GQ5VZR2 741 aa18.5■□□□□ 0.55
TCOF1-209ENST00000506630 FAM196AQ6ZSG2 479 aa18.5■□□□□ 0.55
TCOF1-209ENST00000506630 ACEP12821 1306 aa18.49■□□□□ 0.55
TCOF1-209ENST00000506630 USP47Q96K76 1375 aa18.49■□□□□ 0.55
TCOF1-209ENST00000506630 POLR3AO14802 1390 aaPredicted RBP18.48■□□□□ 0.55
TCOF1-209ENST00000506630 STRN4Q9NRL3 753 aa18.48■□□□□ 0.55
TCOF1-209ENST00000506630 SPATA31A1Q5TZJ5 1347 aa18.48■□□□□ 0.55
TCOF1-209ENST00000506630 ST20-MTHFSA0A0A6YYL1 179 aa18.47■□□□□ 0.55
TCOF1-209ENST00000506630 PLEKHG3A1L390 1219 aa18.47■□□□□ 0.55
TCOF1-209ENST00000506630 TRIM37O94972 964 aa18.47■□□□□ 0.55
TCOF1-209ENST00000506630 APBA3O96018 575 aa18.46■□□□□ 0.55
TCOF1-209ENST00000506630 CAMKK2Q96RR4 588 aa18.46■□□□□ 0.55
TCOF1-209ENST00000506630 PHRF1Q9P1Y6 1649 aaKnown RBP18.45■□□□□ 0.54
TCOF1-209ENST00000506630 PARD3Q8TEW0 1356 aa18.45■□□□□ 0.54
TCOF1-209ENST00000506630 KIAA0232Q92628 1395 aa18.45■□□□□ 0.54
TCOF1-209ENST00000506630 CHRNA2Q15822 529 aa18.45■□□□□ 0.54
TCOF1-209ENST00000506630 MON2Q7Z3U7 1717 aa18.45■□□□□ 0.54
TCOF1-209ENST00000506630 THSD7AQ9UPZ6 1657 aa18.44■□□□□ 0.54
TCOF1-209ENST00000506630 EVA1CP58658 441 aa18.44■□□□□ 0.54
TCOF1-209ENST00000506630 PDE3BQ13370 1112 aa18.44■□□□□ 0.54
TCOF1-209ENST00000506630 CABP1Q9NZU7 370 aa18.44■□□□□ 0.54
TCOF1-209ENST00000506630 ZC3H6P61129 1189 aaKnown RBP18.43■□□□□ 0.54
TCOF1-209ENST00000506630 USP35Q9P2H5 1018 aa18.43■□□□□ 0.54
TCOF1-209ENST00000506630 NBPF14Q5TI25 921 aa18.42■□□□□ 0.54
TCOF1-209ENST00000506630 TESK2Q96S53 571 aa18.42■□□□□ 0.54
TCOF1-209ENST00000506630 NRKQ7Z2Y5 1582 aa18.42■□□□□ 0.54
TCOF1-209ENST00000506630 USP6P35125 1406 aa18.4■□□□□ 0.54
TCOF1-209ENST00000506630 TNS1Q9HBL0 1735 aaKnown RBP18.4■□□□□ 0.54
TCOF1-209ENST00000506630 BARGINQ6ZT62 677 aa18.4■□□□□ 0.54
TCOF1-209ENST00000506630 PIK3C2AO00443 1686 aa18.39■□□□□ 0.53
TCOF1-209ENST00000506630 SLC24A1O60721 1099 aa18.38■□□□□ 0.53
TCOF1-209ENST00000506630 TMC1Q8TDI8 760 aa18.38■□□□□ 0.53
TCOF1-209ENST00000506630 BRD4O60885 1362 aaPredicted RBP18.37■□□□□ 0.53
TCOF1-209ENST00000506630 DCAF8L1A6NGE4 600 aa18.36■□□□□ 0.53
TCOF1-209ENST00000506630 YY1P25490 414 aa18.36■□□□□ 0.53
TCOF1-209ENST00000506630 TMF1P82094 1093 aa18.36■□□□□ 0.53
TCOF1-209ENST00000506630 SSH2Q76I76 1423 aa18.36■□□□□ 0.53
TCOF1-209ENST00000506630 TCP11L2Q8N4U5 519 aa18.36■□□□□ 0.53
TCOF1-209ENST00000506630 ABTB2Q8N961 1025 aa18.36■□□□□ 0.53
TCOF1-209ENST00000506630 CPSF1Q10570 1443 aaKnown RBP18.35■□□□□ 0.53
TCOF1-209ENST00000506630 KTN1Q86UP2 1357 aaKnown RBP18.35■□□□□ 0.53
TCOF1-209ENST00000506630 PPP1R1BQ9UD71 204 aaPredicted RBP18.35■□□□□ 0.53
TCOF1-209ENST00000506630 MYOM1P52179 1685 aa18.34■□□□□ 0.53
TCOF1-209ENST00000506630 CD163L1Q9NR16 1453 aa18.34■□□□□ 0.53
TCOF1-209ENST00000506630 C11orf95C9JLR9 678 aaPredicted RBP18.34■□□□□ 0.53
TCOF1-209ENST00000506630 LARP1Q6PKG0 1096 aaKnown RBP18.34■□□□□ 0.53
TCOF1-209ENST00000506630 PUS7Q96PZ0 661 aaKnown RBP18.34■□□□□ 0.53
TCOF1-209ENST00000506630 SPON1Q9HCB6 807 aa18.34■□□□□ 0.53
TCOF1-209ENST00000506630 THRAP3Q9Y2W1 955 aaKnown RBP18.34■□□□□ 0.53
TCOF1-209ENST00000506630 CAMTA1Q9Y6Y1 1673 aa18.34■□□□□ 0.53
TCOF1-209ENST00000506630 USP19O94966 1318 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms