RNA–Protein interactions for RNA: ENST00000497342.1

CKS1BP2-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 2, humanhuman

BASIC

Gene CKS1BP2, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP2-201ENST00000497342 DNAJC14Q6Y2X3 702 aaPredicted RBP3.98□□□□□ -1.77
CKS1BP2-201ENST00000497342 NUTM1Q86Y26 1132 aa3.98□□□□□ -1.77
CKS1BP2-201ENST00000497342 SLC39A7Q92504 469 aa3.98□□□□□ -1.77
CKS1BP2-201ENST00000497342 HMX1Q9NP08 348 aaPredicted RBP3.98□□□□□ -1.77
CKS1BP2-201ENST00000497342 IVNS1ABPQ9Y6Y0 642 aa3.98□□□□□ -1.77
CKS1BP2-201ENST00000497342 MAGI3Q5TCQ9 1506 aa3.98□□□□□ -1.77
CKS1BP2-201ENST00000497342 ARAP3Q8WWN8 1544 aa3.98□□□□□ -1.77
CKS1BP2-201ENST00000497342 NCOA1Q15788 1441 aa3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 UHRF1BP1Q6BDS2 1440 aa3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 PSDA5PKW4 1024 aaPredicted RBP3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 KDM4AO75164 1064 aa3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 VAMP1P23763 118 aa3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 KANK4Q5T7N3 995 aaPredicted RBP3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 DESI1Q6ICB0 168 aa3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 PLEKHM2Q8IWE5 1019 aa3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 PELP1Q8IZL8 1130 aaKnown RBP3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 TRIM52Q96A61 297 aa3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 TSKSQ9UJT2 592 aa3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 PRDM2Q13029 1718 aa3.97□□□□□ -1.77
CKS1BP2-201ENST00000497342 ALKQ9UM73 1620 aa3.96□□□□□ -1.78
CKS1BP2-201ENST00000497342 NBPF26B4DH59 902 aa3.96□□□□□ -1.78
CKS1BP2-201ENST00000497342 ATP9BO43861 1147 aa3.96□□□□□ -1.78
CKS1BP2-201ENST00000497342 NDUFV2P19404 249 aa3.96□□□□□ -1.78
CKS1BP2-201ENST00000497342 CEBPAP49715 358 aaPredicted RBP3.96□□□□□ -1.78
CKS1BP2-201ENST00000497342 PHLDB3Q6NSJ2 640 aa3.96□□□□□ -1.78
CKS1BP2-201ENST00000497342 PRR7Q8TB68 274 aa3.96□□□□□ -1.78
CKS1BP2-201ENST00000497342 PCDHGC3Q9UN70 934 aa3.96□□□□□ -1.78
CKS1BP2-201ENST00000497342 SETD1BQ9UPS6 1966 aaKnown RBP3.96□□□□□ -1.78
CKS1BP2-201ENST00000497342 UNCXA6NJT0 531 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 TRIM6-TRIM34B2RNG4 842 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 C3orf80F5H4A9 247 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 RAPGEF3O95398 923 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 FDX1P10109 184 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 COL9A1P20849 921 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 MTMR2Q13614 643 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 GPR153Q6NV75 609 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 C3orf67Q6ZVT6 689 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 C1orf216Q8TAB5 229 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 CABLES1Q8TDN4 633 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 TFIP11Q9UBB9 837 aaKnown RBP3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 CHIC2Q9UKJ5 165 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 ZMIZ1Q9ULJ6 1067 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 LRP5O75197 1615 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 PTPRKQ15262 1439 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 CD109Q6YHK3 1445 aa3.95□□□□□ -1.78
CKS1BP2-201ENST00000497342 PBRM1Q86U86 1689 aa3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 TTC37Q6PGP7 1564 aa3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 FAM196BA6NMK8 535 aa3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 CTDSPL2Q05D32 466 aa3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 SLF2Q8IX21 1173 aa3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 ZNF454Q8N9F8 522 aa3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 HELBQ8NG08 1087 aaPredicted RBP3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 TATDN2Q93075 761 aa3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 SIRT1Q96EB6 747 aa3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 POGZQ7Z3K3 1410 aa3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 ZC3H4Q9UPT8 1303 aaKnown RBP3.94□□□□□ -1.78
CKS1BP2-201ENST00000497342 DDX11L8A8MPP1 907 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 CFAP99D6REC4 459 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 LZTS3O60299 673 aaPredicted RBP3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 SEC24BO95487 1268 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 HOXB3P14651 431 aaPredicted RBP3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 SSFA2P28290 1259 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 LMOD1P29536 600 aaPredicted RBP3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 PRELPP51888 382 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 EVX2Q03828 476 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 VAC14Q08AM6 782 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 NOM1Q5C9Z4 860 aaKnown RBP3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 NUDT18Q6ZVK8 323 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 CCER1Q8TC90 406 aaPredicted RBP3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 CLP1Q92989 425 aaKnown RBP3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 SLC4A5Q9BY07 1137 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 PTPRGP23470 1445 aa3.93□□□□□ -1.78
CKS1BP2-201ENST00000497342 FGD5Q6ZNL6 1462 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 KIAA0556O60303 1618 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 CUX1P39880 1505 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 NUTM2BA6NNL0 878 aaPredicted RBP3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 NUTM2EB1AL46 878 aaPredicted RBP3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 SLC10A3P09131 477 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 RXRBP28702 533 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 NR1H3Q13133 447 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 COL19A1Q14993 1142 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 RSPH4AQ5TD94 716 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 NUTM2DQ5VT03 806 aaPredicted RBP3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 TBC1D9Q6ZT07 1266 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 RNF135Q8IUD6 432 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 NUTM2AQ8IVF1 878 aaPredicted RBP3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 ZNF784Q8NCA9 323 aaPredicted RBP3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 C8orf37Q96NL8 207 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 KIAA1522Q9P206 1035 aaPredicted RBP3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 UHRF1BP1LA0JNW5 1464 aa3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 CDK12Q9NYV4 1490 aaPredicted RBP3.92□□□□□ -1.78
CKS1BP2-201ENST00000497342 FHAD1B1AJZ9 1412 aa3.91□□□□□ -1.78
CKS1BP2-201ENST00000497342 RFX1P22670 979 aa3.91□□□□□ -1.78
CKS1BP2-201ENST00000497342 MCCD1P59942 119 aaPredicted RBP3.91□□□□□ -1.78
CKS1BP2-201ENST00000497342 EIF4G2P78344 907 aaKnown RBP eCLIP3.91□□□□□ -1.78
CKS1BP2-201ENST00000497342 MLECQ14165 292 aa3.91□□□□□ -1.78
CKS1BP2-201ENST00000497342 DOK7Q18PE1 504 aa3.91□□□□□ -1.78
CKS1BP2-201ENST00000497342 PPP4R3BQ5MIZ7 849 aa3.91□□□□□ -1.78
CKS1BP2-201ENST00000497342 TMEM164Q5U3C3 297 aa3.91□□□□□ -1.78
CKS1BP2-201ENST00000497342 ZNF772Q68DY9 489 aaPredicted RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms