RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SPG7Q9UQ90 795 aa15.86■□□□□ 0.13
PTPRF-215ENST00000496447 IPO7O95373 1038 aaKnown RBP15.86■□□□□ 0.13
PTPRF-215ENST00000496447 PPP2R1AP30153 589 aa15.86■□□□□ 0.13
PTPRF-215ENST00000496447 BRMS1Q9HCU9 246 aa15.86■□□□□ 0.13
PTPRF-215ENST00000496447 NBPF1Q3BBV0 1214 aa15.86■□□□□ 0.13
PTPRF-215ENST00000496447 SULT6B1Q6IMI4 303 aa15.86■□□□□ 0.13
PTPRF-215ENST00000496447 DNAJC2Q99543 621 aaKnown RBP15.86■□□□□ 0.13
PTPRF-215ENST00000496447 PRDM11Q9NQV5 511 aa15.86■□□□□ 0.13
PTPRF-215ENST00000496447 BRD4O60885 1362 aaPredicted RBP15.86■□□□□ 0.13
PTPRF-215ENST00000496447 RTEL1-TNFRSF6BF6WH68 1400 aa15.85■□□□□ 0.13
PTPRF-215ENST00000496447 ZNF530Q6P9A1 599 aaPredicted RBP15.85■□□□□ 0.13
PTPRF-215ENST00000496447 CNNM1Q9NRU3 951 aa15.85■□□□□ 0.13
PTPRF-215ENST00000496447 TWISTNBQ3B726 338 aaPredicted RBP15.85■□□□□ 0.13
PTPRF-215ENST00000496447 SLC12A5Q9H2X9 1139 aa15.85■□□□□ 0.13
PTPRF-215ENST00000496447 RRP9O43818 475 aaKnown RBP15.84■□□□□ 0.13
PTPRF-215ENST00000496447 CCAR2Q8N163 923 aaKnown RBP15.84■□□□□ 0.13
PTPRF-215ENST00000496447 CC2D2AQ9P2K1 1620 aa15.84■□□□□ 0.13
PTPRF-215ENST00000496447 TROQ12816 1431 aaPredicted RBP15.84■□□□□ 0.13
PTPRF-215ENST00000496447 ERICH3Q5RHP9 1530 aa15.84■□□□□ 0.13
PTPRF-215ENST00000496447 EHBP1L1Q8N3D4 1523 aa15.84■□□□□ 0.13
PTPRF-215ENST00000496447 CDC45O75419 566 aa15.84■□□□□ 0.13
PTPRF-215ENST00000496447 XBP1P17861 261 aa15.84■□□□□ 0.13
PTPRF-215ENST00000496447 SART3Q15020 963 aaKnown RBP15.84■□□□□ 0.13
PTPRF-215ENST00000496447 NFKBIBQ15653 356 aa15.84■□□□□ 0.13
PTPRF-215ENST00000496447 TOPBP1Q92547 1522 aa15.83■□□□□ 0.13
PTPRF-215ENST00000496447 EFCAB5A4FU69 1503 aa15.83■□□□□ 0.13
PTPRF-215ENST00000496447 HDGFL1Q5TGJ6 251 aa15.83■□□□□ 0.12
PTPRF-215ENST00000496447 PNISRQ8TF01 805 aaKnown RBP15.83■□□□□ 0.12
PTPRF-215ENST00000496447 GNL3LQ9NVN8 582 aaKnown RBP15.83■□□□□ 0.12
PTPRF-215ENST00000496447 PSMA5P28066 241 aa15.83■□□□□ 0.12
PTPRF-215ENST00000496447 EXOSC9Q06265 439 aaKnown RBP15.83■□□□□ 0.12
PTPRF-215ENST00000496447 SLC3A2P08195 630 aaKnown RBP15.82■□□□□ 0.12
PTPRF-215ENST00000496447 BRPF3Q9ULD4 1205 aa15.82■□□□□ 0.12
PTPRF-215ENST00000496447 CCDC70Q6NSX1 233 aa15.82■□□□□ 0.12
PTPRF-215ENST00000496447 CCDC73Q6ZRK6 1079 aa15.81■□□□□ 0.12
PTPRF-215ENST00000496447 ERC1Q8IUD2 1116 aa15.81■□□□□ 0.12
PTPRF-215ENST00000496447 KIAA1107Q9UPP5 1409 aa15.81■□□□□ 0.12
PTPRF-215ENST00000496447 SETQ01105 290 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-215ENST00000496447 TTC39AQ5SRH9 613 aa15.81■□□□□ 0.12
PTPRF-215ENST00000496447 ERBINQ96RT1 1412 aa15.81■□□□□ 0.12
PTPRF-215ENST00000496447 RPGRIP1LQ68CZ1 1315 aa15.8■□□□□ 0.12
PTPRF-215ENST00000496447 CCDC158Q5M9N0 1113 aa15.8■□□□□ 0.12
PTPRF-215ENST00000496447 ARAP1Q96P48 1450 aa15.8■□□□□ 0.12
PTPRF-215ENST00000496447 SLC4A2P04920 1241 aa15.8■□□□□ 0.12
PTPRF-215ENST00000496447 XPCQ01831 940 aaPredicted RBP15.8■□□□□ 0.12
PTPRF-215ENST00000496447 CCAR1Q8IX12 1150 aaKnown RBP15.8■□□□□ 0.12
PTPRF-215ENST00000496447 R3HCC1Q9Y3T6 440 aaKnown RBP15.8■□□□□ 0.12
PTPRF-215ENST00000496447 C22orf23Q9BZE7 217 aa15.79■□□□□ 0.12
PTPRF-215ENST00000496447 HECW1Q76N89 1606 aa15.79■□□□□ 0.12
PTPRF-215ENST00000496447 GNAI2P04899 355 aa15.79■□□□□ 0.12
PTPRF-215ENST00000496447 CHMP5Q9NZZ3 219 aa15.79■□□□□ 0.12
PTPRF-215ENST00000496447 POLA1P09884 1462 aaPredicted RBP15.79■□□□□ 0.12
PTPRF-215ENST00000496447 KRI1Q8N9T8 703 aaKnown RBP15.79■□□□□ 0.12
PTPRF-215ENST00000496447 KDM4AO75164 1064 aa15.79■□□□□ 0.12
PTPRF-215ENST00000496447 NUCB2P80303 420 aa15.79■□□□□ 0.12
PTPRF-215ENST00000496447 MRE11P49959 708 aa15.78■□□□□ 0.12
PTPRF-215ENST00000496447 SASS6Q6UVJ0 657 aa15.78■□□□□ 0.12
PTPRF-215ENST00000496447 HIP1O00291 1037 aa15.78■□□□□ 0.12
PTPRF-215ENST00000496447 MYL6BP14649 208 aa15.77■□□□□ 0.12
PTPRF-215ENST00000496447 RRP12Q5JTH9 1297 aaKnown RBP15.77■□□□□ 0.12
PTPRF-215ENST00000496447 SYNJ1O43426 1573 aa15.77■□□□□ 0.12
PTPRF-215ENST00000496447 TSR2Q969E8 191 aaKnown RBP15.76■□□□□ 0.11
PTPRF-215ENST00000496447 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.76■□□□□ 0.11
PTPRF-215ENST00000496447 C1orf115Q9H7X2 142 aa15.76■□□□□ 0.11
PTPRF-215ENST00000496447 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.76■□□□□ 0.11
PTPRF-215ENST00000496447 ATAD2Q6PL18 1390 aa15.75■□□□□ 0.11
PTPRF-215ENST00000496447 MPHOSPH8Q99549 860 aa15.75■□□□□ 0.11
PTPRF-215ENST00000496447 ANKRD30BQ9BXX2 1392 aa15.75■□□□□ 0.11
PTPRF-215ENST00000496447 SRCIN1Q9C0H9 1055 aa15.75■□□□□ 0.11
PTPRF-215ENST00000496447 CCT4P50991 539 aaKnown RBP15.75■□□□□ 0.11
PTPRF-215ENST00000496447 ZC3H6P61129 1189 aaKnown RBP15.75■□□□□ 0.11
PTPRF-215ENST00000496447 RRS1Q15050 365 aaKnown RBP15.75■□□□□ 0.11
PTPRF-215ENST00000496447 NOB1Q9ULX3 412 aaKnown RBP15.75■□□□□ 0.11
PTPRF-215ENST00000496447 ZNF592Q92610 1267 aa15.75■□□□□ 0.11
PTPRF-215ENST00000496447 ZNF428Q96B54 188 aa15.74■□□□□ 0.11
PTPRF-215ENST00000496447 CDCA7LQ96GN5 454 aa15.74■□□□□ 0.11
PTPRF-215ENST00000496447 SIL1Q9H173 461 aa15.74■□□□□ 0.11
PTPRF-215ENST00000496447 ATP2B2Q01814 1243 aa15.74■□□□□ 0.11
PTPRF-215ENST00000496447 CT47A1Q5JQC4 288 aaPredicted RBP15.74■□□□□ 0.11
PTPRF-215ENST00000496447 CCDC57Q2TAC2 916 aa15.73■□□□□ 0.11
PTPRF-215ENST00000496447 EPS15P42566 896 aa15.73■□□□□ 0.11
PTPRF-215ENST00000496447 BTBD11A6QL63 1104 aa15.73■□□□□ 0.11
PTPRF-215ENST00000496447 TEX35Q5T0J7 233 aa15.73■□□□□ 0.11
PTPRF-215ENST00000496447 CCDC66A2RUB6 948 aa15.72■□□□□ 0.11
PTPRF-215ENST00000496447 RBM5P52756 815 aaKnown RBP eCLIP15.72■□□□□ 0.11
PTPRF-215ENST00000496447 TMEM132AQ24JP5 1023 aa15.72■□□□□ 0.11
PTPRF-215ENST00000496447 HOMER1Q86YM7 354 aa15.72■□□□□ 0.11
PTPRF-215ENST00000496447 OLFM4Q6UX06 510 aa15.72■□□□□ 0.11
PTPRF-215ENST00000496447 DAPK1P53355 1430 aa15.72■□□□□ 0.11
PTPRF-215ENST00000496447 ATP2B1P20020 1258 aa15.72■□□□□ 0.11
PTPRF-215ENST00000496447 NUDT16Q96DE0 195 aaKnown RBP15.72■□□□□ 0.11
PTPRF-215ENST00000496447 NACAP1Q9BZK3 213 aa15.72■□□□□ 0.11
PTPRF-215ENST00000496447 HMGXB3Q12766 1538 aa15.71■□□□□ 0.11
PTPRF-215ENST00000496447 GCC1Q96CN9 775 aa15.71■□□□□ 0.11
PTPRF-215ENST00000496447 NAP1L1P55209 391 aaKnown RBP15.71■□□□□ 0.11
PTPRF-215ENST00000496447 KCNH5Q8NCM2 988 aa15.71■□□□□ 0.11
PTPRF-215ENST00000496447 ODF2Q5BJF6 829 aa15.7■□□□□ 0.1
PTPRF-215ENST00000496447 CDK5RAP3Q96JB5 506 aa15.7■□□□□ 0.1
PTPRF-215ENST00000496447 BICDL1Q6ZP65 573 aa15.7■□□□□ 0.1
PTPRF-215ENST00000496447 SDF4Q9BRK5 362 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms