RNA–Protein interactions for RNA: ENST00000495122.1

CBX4-204, Transcript of chromobox 4, humanhuman

TSL 3

Gene CBX4, Length 490 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-204ENST00000495122 QTRT2Q9H974 415 aaKnown RBP22.21■■□□□ 1.15
CBX4-204ENST00000495122 POGKQ9P215 609 aa22.21■■□□□ 1.15
CBX4-204ENST00000495122 RBM6P78332 1123 aaKnown RBP22.2■■□□□ 1.14
CBX4-204ENST00000495122 PHF8Q9UPP1 1060 aa22.2■■□□□ 1.14
CBX4-204ENST00000495122 TRAK1Q9UPV9 953 aa22.2■■□□□ 1.14
CBX4-204ENST00000495122 SBNO2Q9Y2G9 1366 aa22.2■■□□□ 1.14
CBX4-204ENST00000495122 NRAPQ86VF7 1730 aa22.2■■□□□ 1.14
CBX4-204ENST00000495122 FNBP4Q8N3X1 1017 aaPredicted RBP22.19■■□□□ 1.14
CBX4-204ENST00000495122 QRICH2Q9H0J4 1663 aa22.19■■□□□ 1.14
CBX4-204ENST00000495122 BCL9LQ86UU0 1499 aa22.18■■□□□ 1.14
CBX4-204ENST00000495122 KRT28Q7Z3Y7 464 aa22.18■■□□□ 1.14
CBX4-204ENST00000495122 USP21Q9UK80 565 aa22.18■■□□□ 1.14
CBX4-204ENST00000495122 SBNO1A3KN83 1393 aa22.17■■□□□ 1.14
CBX4-204ENST00000495122 UPF1Q92900 1129 aaKnown RBP eCLIP22.17■■□□□ 1.14
CBX4-204ENST00000495122 GLI3P10071 1580 aa22.16■■□□□ 1.14
CBX4-204ENST00000495122 SLIT2O94813 1529 aa22.16■■□□□ 1.14
CBX4-204ENST00000495122 MINK1Q8N4C8 1332 aaPredicted RBP22.15■■□□□ 1.14
CBX4-204ENST00000495122 RALBP1Q15311 655 aa22.15■■□□□ 1.14
CBX4-204ENST00000495122 TRPC5Q9UL62 973 aaPredicted RBP22.15■■□□□ 1.14
CBX4-204ENST00000495122 PHRF1Q9P1Y6 1649 aaKnown RBP22.15■■□□□ 1.14
CBX4-204ENST00000495122 ATP7BP35670 1465 aa22.15■■□□□ 1.14
CBX4-204ENST00000495122 GTF3C3Q9Y5Q9 886 aa22.14■■□□□ 1.13
CBX4-204ENST00000495122 PRR36Q9H6K5 1346 aa22.13■■□□□ 1.13
CBX4-204ENST00000495122 EP400Q96L91 3159 aa22.13■■□□□ 1.13
CBX4-204ENST00000495122 COL14A1Q05707 1796 aaKnown RBP22.12■■□□□ 1.13
CBX4-204ENST00000495122 PSME1Q06323 249 aa22.12■■□□□ 1.13
CBX4-204ENST00000495122 POLR3GLQ9BT43 218 aa22.12■■□□□ 1.13
CBX4-204ENST00000495122 ARHGEF10O15013 1369 aa22.12■■□□□ 1.13
CBX4-204ENST00000495122 PMFBP1Q8TBY8 1022 aa22.1■■□□□ 1.13
CBX4-204ENST00000495122 WASLO00401 505 aaPredicted RBP22.09■■□□□ 1.13
CBX4-204ENST00000495122 MRS2Q9HD23 443 aa22.08■■□□□ 1.13
CBX4-204ENST00000495122 BRD4O60885 1362 aaPredicted RBP22.08■■□□□ 1.12
CBX4-204ENST00000495122 PARD3Q8TEW0 1356 aa22.06■■□□□ 1.12
CBX4-204ENST00000495122 MYBBP1AQ9BQG0 1328 aaKnown RBP22.06■■□□□ 1.12
CBX4-204ENST00000495122 ATAD2Q6PL18 1390 aa22.04■■□□□ 1.12
CBX4-204ENST00000495122 CABLES1Q8TDN4 633 aa22.04■■□□□ 1.12
CBX4-204ENST00000495122 NPC1L1Q9UHC9 1359 aa22.03■■□□□ 1.12
CBX4-204ENST00000495122 PER1O15534 1290 aaPredicted RBP22.03■■□□□ 1.12
CBX4-204ENST00000495122 PUS7Q96PZ0 661 aaKnown RBP22.03■■□□□ 1.12
CBX4-204ENST00000495122 MYOM1P52179 1685 aa22.03■■□□□ 1.12
CBX4-204ENST00000495122 UNC5CLQ8IV45 518 aa22.02■■□□□ 1.12
CBX4-204ENST00000495122 GJD4Q96KN9 370 aaPredicted RBP22.02■■□□□ 1.12
CBX4-204ENST00000495122 HAP1P54257 671 aaPredicted RBP22.01■■□□□ 1.11
CBX4-204ENST00000495122 LMOD2Q6P5Q4 547 aa22.01■■□□□ 1.11
CBX4-204ENST00000495122 CENPJQ9HC77 1338 aaPredicted RBP22.01■■□□□ 1.11
CBX4-204ENST00000495122 AKAP12Q02952 1782 aa22■■□□□ 1.11
CBX4-204ENST00000495122 INSRP06213 1382 aa21.99■■□□□ 1.11
CBX4-204ENST00000495122 NRKQ7Z2Y5 1582 aa21.99■■□□□ 1.11
CBX4-204ENST00000495122 NUDT16Q96DE0 195 aaKnown RBP21.98■■□□□ 1.11
CBX4-204ENST00000495122 POLR3AO14802 1390 aaPredicted RBP21.98■■□□□ 1.11
CBX4-204ENST00000495122 PLEKHG5O94827 1062 aa21.97■■□□□ 1.11
CBX4-204ENST00000495122 NLRP13Q86W25 1043 aa21.97■■□□□ 1.11
CBX4-204ENST00000495122 NGDNQ8NEJ9 315 aaKnown RBP21.97■■□□□ 1.11
CBX4-204ENST00000495122 HNRNPUQ00839 825 aaKnown RBP eCLIP21.96■■□□□ 1.11
CBX4-204ENST00000495122 CDK19Q9BWU1 502 aa21.96■■□□□ 1.11
CBX4-204ENST00000495122 PANK3Q9H999 370 aa21.96■■□□□ 1.11
CBX4-204ENST00000495122 ZBED9Q6R2W3 1325 aa21.95■■□□□ 1.1
CBX4-204ENST00000495122 THSD7AQ9UPZ6 1657 aa21.95■■□□□ 1.1
CBX4-204ENST00000495122 VPS72Q15906 364 aa21.94■■□□□ 1.1
CBX4-204ENST00000495122 CCDC184Q52MB2 194 aa21.93■■□□□ 1.1
CBX4-204ENST00000495122 TMC1Q8TDI8 760 aa21.93■■□□□ 1.1
CBX4-204ENST00000495122 LMO7Q8WWI1 1683 aa21.92■■□□□ 1.1
CBX4-204ENST00000495122 FAM83GA6ND36 823 aa21.92■■□□□ 1.1
CBX4-204ENST00000495122 KNSTRNQ9Y448 316 aa21.91■■□□□ 1.1
CBX4-204ENST00000495122 PPIP5K1Q6PFW1 1433 aa21.9■■□□□ 1.1
CBX4-204ENST00000495122 RGPD1P0DJD0 1748 aa21.9■■□□□ 1.1
CBX4-204ENST00000495122 PAK3O75914 559 aaPredicted RBP21.9■■□□□ 1.1
CBX4-204ENST00000495122 PNISRQ8TF01 805 aaKnown RBP21.9■■□□□ 1.1
CBX4-204ENST00000495122 CCDC61Q9Y6R9 512 aa21.9■■□□□ 1.1
CBX4-204ENST00000495122 PIK3C2AO00443 1686 aa21.9■■□□□ 1.1
CBX4-204ENST00000495122 ACEP12821 1306 aa21.89■■□□□ 1.1
CBX4-204ENST00000495122 MON2Q7Z3U7 1717 aa21.89■■□□□ 1.09
CBX4-204ENST00000495122 NINLQ9Y2I6 1382 aa21.88■■□□□ 1.09
CBX4-204ENST00000495122 PLEKHG3A1L390 1219 aa21.88■■□□□ 1.09
CBX4-204ENST00000495122 FAM9BQ8IZU0 186 aa21.88■■□□□ 1.09
CBX4-204ENST00000495122 WNK3Q9BYP7 1800 aa21.87■■□□□ 1.09
CBX4-204ENST00000495122 TNS1Q9HBL0 1735 aaKnown RBP21.87■■□□□ 1.09
CBX4-204ENST00000495122 BTG4Q9NY30 223 aa21.86■■□□□ 1.09
CBX4-204ENST00000495122 RGPD5Q99666 1765 aa21.86■■□□□ 1.09
CBX4-204ENST00000495122 EVC2Q86UK5 1308 aa21.85■■□□□ 1.09
CBX4-204ENST00000495122 ONECUT3O60422 494 aaPredicted RBP21.85■■□□□ 1.09
CBX4-204ENST00000495122 AMER1Q5JTC6 1135 aaPredicted RBP21.84■■□□□ 1.09
CBX4-204ENST00000495122 SEPT12Q8IYM1 358 aa21.84■■□□□ 1.09
CBX4-204ENST00000495122 CCDC9Q9Y3X0 531 aaKnown RBP21.84■■□□□ 1.09
CBX4-204ENST00000495122 KIAA0232Q92628 1395 aa21.84■■□□□ 1.09
CBX4-204ENST00000495122 BLMP54132 1417 aaPredicted RBP21.83■■□□□ 1.09
CBX4-204ENST00000495122 SRPK2P78362 688 aaKnown RBP21.83■■□□□ 1.09
CBX4-204ENST00000495122 COL18A1P39060 1754 aa21.82■■□□□ 1.08
CBX4-204ENST00000495122 SLIT3O75094 1523 aa21.82■■□□□ 1.08
CBX4-204ENST00000495122 CCDC125Q86Z20 511 aa21.82■■□□□ 1.08
CBX4-204ENST00000495122 CABP2Q9NPB3 220 aa21.82■■□□□ 1.08
CBX4-204ENST00000495122 USP54Q70EL1 1684 aa21.82■■□□□ 1.08
CBX4-204ENST00000495122 USP6P35125 1406 aa21.81■■□□□ 1.08
CBX4-204ENST00000495122 PRDM11Q9NQV5 511 aa21.81■■□□□ 1.08
CBX4-204ENST00000495122 USP19O94966 1318 aa21.8■■□□□ 1.08
CBX4-204ENST00000495122 CAMTA1Q9Y6Y1 1673 aa21.8■■□□□ 1.08
CBX4-204ENST00000495122 PARP4Q9UKK3 1724 aaKnown RBP21.8■■□□□ 1.08
CBX4-204ENST00000495122 SRCAPQ6ZRS2 3230 aa21.8■■□□□ 1.08
CBX4-204ENST00000495122 SPATA31A5Q5VU36 1347 aa21.8■■□□□ 1.08
CBX4-204ENST00000495122 SPATA31A7Q8IWB4 1347 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms