RNA–Protein interactions for RNA: ENST00000493618.5

ATG4B-223, Transcript of autophagy related 4B cysteine peptidase, humanhuman

TSL 5

Gene ATG4B, Length 899 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4B-223ENST00000493618 TRPM1Q7Z4N2 1603 aa21.17■□□□□ 0.98
ATG4B-223ENST00000493618 COL14A1Q05707 1796 aaKnown RBP21.16■□□□□ 0.98
ATG4B-223ENST00000493618 NEUROD1Q13562 356 aa21.16■□□□□ 0.98
ATG4B-223ENST00000493618 PHRF1Q9P1Y6 1649 aaKnown RBP21.15■□□□□ 0.98
ATG4B-223ENST00000493618 FAM83GA6ND36 823 aa21.15■□□□□ 0.98
ATG4B-223ENST00000493618 CCDC9Q9Y3X0 531 aaKnown RBP21.14■□□□□ 0.97
ATG4B-223ENST00000493618 EP400Q96L91 3159 aa21.14■□□□□ 0.97
ATG4B-223ENST00000493618 CENPJQ9HC77 1338 aaPredicted RBP21.11■□□□□ 0.97
ATG4B-223ENST00000493618 VPS72Q15906 364 aa21.11■□□□□ 0.97
ATG4B-223ENST00000493618 ACEP12821 1306 aa21.1■□□□□ 0.97
ATG4B-223ENST00000493618 NUTM2GQ5VZR2 741 aa21.1■□□□□ 0.97
ATG4B-223ENST00000493618 BTG4Q9NY30 223 aa21.1■□□□□ 0.97
ATG4B-223ENST00000493618 SRPK2P78362 688 aaKnown RBP21.09■□□□□ 0.97
ATG4B-223ENST00000493618 CABP2Q9NPB3 220 aa21.08■□□□□ 0.97
ATG4B-223ENST00000493618 CCDC61Q9Y6R9 512 aa21.08■□□□□ 0.97
ATG4B-223ENST00000493618 POLR3AO14802 1390 aaPredicted RBP21.08■□□□□ 0.96
ATG4B-223ENST00000493618 PPIP5K1Q6PFW1 1433 aa21.07■□□□□ 0.96
ATG4B-223ENST00000493618 NBPF8Q3BBV2 869 aa21.07■□□□□ 0.96
ATG4B-223ENST00000493618 SEPT12Q8IYM1 358 aa21.07■□□□□ 0.96
ATG4B-223ENST00000493618 PLEKHG3A1L390 1219 aa21.05■□□□□ 0.96
ATG4B-223ENST00000493618 A0A0G2JS52 829 aa21.04■□□□□ 0.96
ATG4B-223ENST00000493618 MYT1Q01538 1121 aa21.04■□□□□ 0.96
ATG4B-223ENST00000493618 PRDM11Q9NQV5 511 aa21.04■□□□□ 0.96
ATG4B-223ENST00000493618 NRKQ7Z2Y5 1582 aa21.03■□□□□ 0.96
ATG4B-223ENST00000493618 ROCK2O75116 1388 aaKnown RBP21.03■□□□□ 0.96
ATG4B-223ENST00000493618 KIAA0232Q92628 1395 aa21.03■□□□□ 0.96
ATG4B-223ENST00000493618 CHRNA2Q15822 529 aa21.03■□□□□ 0.96
ATG4B-223ENST00000493618 ZC3H6P61129 1189 aaKnown RBP21.02■□□□□ 0.96
ATG4B-223ENST00000493618 FAM98CQ17RN3 349 aaKnown RBP21.02■□□□□ 0.96
ATG4B-223ENST00000493618 ONECUT3O60422 494 aaPredicted RBP21■□□□□ 0.95
ATG4B-223ENST00000493618 ABTB2Q8N961 1025 aa21■□□□□ 0.95
ATG4B-223ENST00000493618 AKAP12Q02952 1782 aa20.98■□□□□ 0.95
ATG4B-223ENST00000493618 KRT27Q7Z3Y8 459 aa20.98■□□□□ 0.95
ATG4B-223ENST00000493618 CABP1Q9NZU7 370 aa20.98■□□□□ 0.95
ATG4B-223ENST00000493618 THSD7AQ9UPZ6 1657 aa20.97■□□□□ 0.95
ATG4B-223ENST00000493618 CCDC125Q86Z20 511 aa20.97■□□□□ 0.95
ATG4B-223ENST00000493618 STRN4Q9NRL3 753 aa20.97■□□□□ 0.95
ATG4B-223ENST00000493618 SPATA31A5Q5VU36 1347 aa20.97■□□□□ 0.95
ATG4B-223ENST00000493618 SPATA31A7Q8IWB4 1347 aa20.97■□□□□ 0.95
ATG4B-223ENST00000493618 BLMP54132 1417 aaPredicted RBP20.96■□□□□ 0.95
ATG4B-223ENST00000493618 EVC2Q86UK5 1308 aa20.96■□□□□ 0.95
ATG4B-223ENST00000493618 PIK3C2AO00443 1686 aa20.95■□□□□ 0.94
ATG4B-223ENST00000493618 LMO7Q8WWI1 1683 aa20.95■□□□□ 0.94
ATG4B-223ENST00000493618 USP6P35125 1406 aa20.94■□□□□ 0.94
ATG4B-223ENST00000493618 CAMTA1Q9Y6Y1 1673 aa20.93■□□□□ 0.94
ATG4B-223ENST00000493618 FAM182BQ5T319 152 aa20.93■□□□□ 0.94
ATG4B-223ENST00000493618 DEFB132Q7Z7B7 95 aa20.93■□□□□ 0.94
ATG4B-223ENST00000493618 USP19O94966 1318 aa20.93■□□□□ 0.94
ATG4B-223ENST00000493618 ZBTB7CA1YPR0 619 aa20.92■□□□□ 0.94
ATG4B-223ENST00000493618 NLRP13Q86W25 1043 aa20.92■□□□□ 0.94
ATG4B-223ENST00000493618 RGPD1P0DJD0 1748 aa20.92■□□□□ 0.94
ATG4B-223ENST00000493618 SF3B2Q13435 895 aaKnown RBP20.91■□□□□ 0.94
ATG4B-223ENST00000493618 SPATA31A1Q5TZJ5 1347 aa20.91■□□□□ 0.94
ATG4B-223ENST00000493618 TONSLQ96HA7 1378 aa20.91■□□□□ 0.94
ATG4B-223ENST00000493618 USP35Q9P2H5 1018 aa20.91■□□□□ 0.94
ATG4B-223ENST00000493618 EVA1CP58658 441 aa20.9■□□□□ 0.94
ATG4B-223ENST00000493618 ZRANB1Q9UGI0 708 aa20.9■□□□□ 0.94
ATG4B-223ENST00000493618 RGPD5Q99666 1765 aa20.9■□□□□ 0.94
ATG4B-223ENST00000493618 SSH2Q76I76 1423 aa20.89■□□□□ 0.94
ATG4B-223ENST00000493618 GCP02774 474 aa20.89■□□□□ 0.93
ATG4B-223ENST00000493618 SLIT3O75094 1523 aa20.88■□□□□ 0.93
ATG4B-223ENST00000493618 BRD4O60885 1362 aaPredicted RBP20.88■□□□□ 0.93
ATG4B-223ENST00000493618 CPDO75976 1380 aa20.88■□□□□ 0.93
ATG4B-223ENST00000493618 MON2Q7Z3U7 1717 aa20.88■□□□□ 0.93
ATG4B-223ENST00000493618 TNS1Q9HBL0 1735 aaKnown RBP20.88■□□□□ 0.93
ATG4B-223ENST00000493618 NLRP6P59044 892 aa20.88■□□□□ 0.93
ATG4B-223ENST00000493618 CARD11Q9BXL7 1154 aa20.88■□□□□ 0.93
ATG4B-223ENST00000493618 TRIM26Q12899 539 aaPredicted RBP20.87■□□□□ 0.93
ATG4B-223ENST00000493618 LARP1Q6PKG0 1096 aaKnown RBP20.87■□□□□ 0.93
ATG4B-223ENST00000493618 COL18A1P39060 1754 aa20.86■□□□□ 0.93
ATG4B-223ENST00000493618 TTC21BQ7Z4L5 1316 aa20.83■□□□□ 0.93
ATG4B-223ENST00000493618 COL5A2P05997 1499 aaPredicted RBP20.83■□□□□ 0.93
ATG4B-223ENST00000493618 SOX12O15370 315 aa20.82■□□□□ 0.92
ATG4B-223ENST00000493618 WNK3Q9BYP7 1800 aa20.82■□□□□ 0.92
ATG4B-223ENST00000493618 KTN1Q86UP2 1357 aaKnown RBP20.82■□□□□ 0.92
ATG4B-223ENST00000493618 ZNF692Q9BU19 519 aaPredicted RBP20.81■□□□□ 0.92
ATG4B-223ENST00000493618 PARP4Q9UKK3 1724 aaKnown RBP20.81■□□□□ 0.92
ATG4B-223ENST00000493618 SRCAPQ6ZRS2 3230 aa20.8■□□□□ 0.92
ATG4B-223ENST00000493618 CPSF1Q10570 1443 aaKnown RBP20.8■□□□□ 0.92
ATG4B-223ENST00000493618 BAG6P46379 1132 aa20.8■□□□□ 0.92
ATG4B-223ENST00000493618 SBNO2Q9Y2G9 1366 aa20.8■□□□□ 0.92
ATG4B-223ENST00000493618 BARGINQ6ZT62 677 aa20.79■□□□□ 0.92
ATG4B-223ENST00000493618 TCP11L2Q8N4U5 519 aa20.79■□□□□ 0.92
ATG4B-223ENST00000493618 EN1Q05925 392 aaPredicted RBP20.78■□□□□ 0.92
ATG4B-223ENST00000493618 CD163L1Q9NR16 1453 aa20.77■□□□□ 0.92
ATG4B-223ENST00000493618 AATKQ6ZMQ8 1374 aa20.77■□□□□ 0.92
ATG4B-223ENST00000493618 TMC1Q8TDI8 760 aa20.77■□□□□ 0.92
ATG4B-223ENST00000493618 CRB1P82279 1406 aa20.77■□□□□ 0.91
ATG4B-223ENST00000493618 LTN1O94822 1766 aa20.77■□□□□ 0.91
ATG4B-223ENST00000493618 TTC21AQ8NDW8 1320 aa20.77■□□□□ 0.91
ATG4B-223ENST00000493618 TRIM37O94972 964 aa20.76■□□□□ 0.91
ATG4B-223ENST00000493618 PDE3BQ13370 1112 aa20.76■□□□□ 0.91
ATG4B-223ENST00000493618 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.76■□□□□ 0.911e-8■□□□□ 9.2
ATG4B-223ENST00000493618 NFAT5O94916 1531 aa20.76■□□□□ 0.91
ATG4B-223ENST00000493618 LRRC37A3O60309 1634 aa20.75■□□□□ 0.91
ATG4B-223ENST00000493618 USP54Q70EL1 1684 aa20.75■□□□□ 0.91
ATG4B-223ENST00000493618 AXIN2Q9Y2T1 843 aa20.75■□□□□ 0.91
ATG4B-223ENST00000493618 FAM196AQ6ZSG2 479 aa20.74■□□□□ 0.91
ATG4B-223ENST00000493618 PSDA5PKW4 1024 aaPredicted RBP20.73■□□□□ 0.91
ATG4B-223ENST00000493618 TOM1L2Q6ZVM7 507 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 76.5 ms