RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 PAK3O75914 559 aaPredicted RBP35.15■■■■□ 3.22
UPF3A-209ENST00000492270 BCL9LQ86UU0 1499 aa35.15■■■■□ 3.22
UPF3A-209ENST00000492270 EVC2Q86UK5 1308 aa35.13■■■■□ 3.21
UPF3A-209ENST00000492270 PHRF1Q9P1Y6 1649 aaKnown RBP35.13■■■■□ 3.21
UPF3A-209ENST00000492270 CDK12Q9NYV4 1490 aaPredicted RBP35.12■■■■□ 3.21
UPF3A-209ENST00000492270 ATRNO75882 1429 aa35.12■■■■□ 3.21
UPF3A-209ENST00000492270 SLIT2O94813 1529 aa35.11■■■■□ 3.21
UPF3A-209ENST00000492270 NWD2Q9ULI1 1742 aa35.1■■■■□ 3.21
UPF3A-209ENST00000492270 RGS12O14924 1447 aa35.09■■■■□ 3.21
UPF3A-209ENST00000492270 RBM6P78332 1123 aaKnown RBP35.09■■■■□ 3.21
UPF3A-209ENST00000492270 TRPC5Q9UL62 973 aaPredicted RBP35.08■■■■□ 3.21
UPF3A-209ENST00000492270 AKAP12Q02952 1782 aa35.08■■■■□ 3.21
UPF3A-209ENST00000492270 SBNO2Q9Y2G9 1366 aa35.07■■■■□ 3.2
UPF3A-209ENST00000492270 CABP1Q9NZU7 370 aa35.06■■■■□ 3.2
UPF3A-209ENST00000492270 CLSPNQ9HAW4 1339 aa35.04■■■■□ 3.2
UPF3A-209ENST00000492270 NRAPQ86VF7 1730 aa35.03■■■■□ 3.2
UPF3A-209ENST00000492270 COL14A1Q05707 1796 aaKnown RBP35.03■■■■□ 3.2
UPF3A-209ENST00000492270 NUTM2GQ5VZR2 741 aa35.02■■■■□ 3.2
UPF3A-209ENST00000492270 GLI3P10071 1580 aa35■■■■□ 3.19
UPF3A-209ENST00000492270 USP6P35125 1406 aa34.99■■■■□ 3.19
UPF3A-209ENST00000492270 UNC5CLQ8IV45 518 aa34.99■■■■□ 3.19
UPF3A-209ENST00000492270 FAM83GA6ND36 823 aa34.98■■■■□ 3.19
UPF3A-209ENST00000492270 NRKQ7Z2Y5 1582 aa34.98■■■■□ 3.19
UPF3A-209ENST00000492270 ATAD2Q6PL18 1390 aa34.96■■■■□ 3.19
UPF3A-209ENST00000492270 PIK3C2AO00443 1686 aa34.95■■■■□ 3.19
UPF3A-209ENST00000492270 MON2Q7Z3U7 1717 aa34.95■■■■□ 3.18
UPF3A-209ENST00000492270 ABTB2Q8N961 1025 aa34.94■■■■□ 3.18
UPF3A-209ENST00000492270 GJD4Q96KN9 370 aaPredicted RBP34.92■■■■□ 3.18
UPF3A-209ENST00000492270 SSH2Q76I76 1423 aa34.91■■■■□ 3.18
UPF3A-209ENST00000492270 BRD4O60885 1362 aaPredicted RBP34.91■■■■□ 3.18
UPF3A-209ENST00000492270 ST20-MTHFSA0A0A6YYL1 179 aa34.9■■■■□ 3.18
UPF3A-209ENST00000492270 CCER1Q8TC90 406 aaPredicted RBP34.9■■■■□ 3.18
UPF3A-209ENST00000492270 TIMELESSQ9UNS1 1208 aa34.89■■■■□ 3.18
UPF3A-209ENST00000492270 KIAA0232Q92628 1395 aa34.88■■■■□ 3.17
UPF3A-209ENST00000492270 USP19O94966 1318 aa34.88■■■■□ 3.17
UPF3A-209ENST00000492270 TESK2Q96S53 571 aa34.88■■■■□ 3.17
UPF3A-209ENST00000492270 CPSF1Q10570 1443 aaKnown RBP34.88■■■■□ 3.17
UPF3A-209ENST00000492270 BRWD3Q6RI45 1802 aa34.88■■■■□ 3.17
UPF3A-209ENST00000492270 BTG4Q9NY30 223 aa34.87■■■■□ 3.17
UPF3A-209ENST00000492270 PRDM11Q9NQV5 511 aa34.86■■■■□ 3.17
UPF3A-209ENST00000492270 USP47Q96K76 1375 aa34.86■■■■□ 3.17
UPF3A-209ENST00000492270 VPS72Q15906 364 aa34.85■■■■□ 3.17
UPF3A-209ENST00000492270 CD163L1Q9NR16 1453 aa34.84■■■■□ 3.17
UPF3A-209ENST00000492270 ZC3H6P61129 1189 aaKnown RBP34.84■■■■□ 3.17
UPF3A-209ENST00000492270 CHRNA2Q15822 529 aa34.83■■■■□ 3.17
UPF3A-209ENST00000492270 NLRP13Q86W25 1043 aa34.83■■■■□ 3.17
UPF3A-209ENST00000492270 SLIT3O75094 1523 aa34.82■■■■□ 3.16
UPF3A-209ENST00000492270 UPF1Q92900 1129 aaKnown RBP eCLIP34.81■■■■□ 3.16
UPF3A-209ENST00000492270 ZNF692Q9BU19 519 aaPredicted RBP34.81■■■■□ 3.16
UPF3A-209ENST00000492270 CCDC9Q9Y3X0 531 aaKnown RBP34.81■■■■□ 3.16
UPF3A-209ENST00000492270 KTN1Q86UP2 1357 aaKnown RBP34.81■■■■□ 3.16
UPF3A-209ENST00000492270 LMO7Q8WWI1 1683 aa34.8■■■■□ 3.16
UPF3A-209ENST00000492270 TTC21BQ7Z4L5 1316 aa34.8■■■■□ 3.16
UPF3A-209ENST00000492270 NLRP6P59044 892 aa34.78■■■■□ 3.16
UPF3A-209ENST00000492270 TMC1Q8TDI8 760 aa34.78■■■■□ 3.16
UPF3A-209ENST00000492270 GCP02774 474 aa34.76■■■■□ 3.16
UPF3A-209ENST00000492270 SLC12A5Q9H2X9 1139 aa34.76■■■■□ 3.16
UPF3A-209ENST00000492270 CPDO75976 1380 aa34.75■■■■□ 3.15
UPF3A-209ENST00000492270 CAMTA1Q9Y6Y1 1673 aa34.74■■■■□ 3.15
UPF3A-209ENST00000492270 PUS7Q96PZ0 661 aaKnown RBP34.73■■■■□ 3.15
UPF3A-209ENST00000492270 TTC21AQ8NDW8 1320 aa34.73■■■■□ 3.15
UPF3A-209ENST00000492270 USP54Q70EL1 1684 aa34.73■■■■□ 3.15
UPF3A-209ENST00000492270 A0A1W2PP64 1363 aa34.71■■■■□ 3.15
UPF3A-209ENST00000492270 EP400Q96L91 3159 aa34.7■■■■□ 3.15
UPF3A-209ENST00000492270 COL18A1P39060 1754 aa34.69■■■■□ 3.14
UPF3A-209ENST00000492270 STRN4Q9NRL3 753 aa34.69■■■■□ 3.14
UPF3A-209ENST00000492270 SPATA31A5Q5VU36 1347 aa34.68■■■■□ 3.14
UPF3A-209ENST00000492270 SPATA31A7Q8IWB4 1347 aa34.68■■■■□ 3.14
UPF3A-209ENST00000492270 SUGP2Q8IX01 1082 aaKnown RBP eCLIP34.68■■■■□ 3.14
UPF3A-209ENST00000492270 SEPT12Q8IYM1 358 aa34.68■■■■□ 3.14
UPF3A-209ENST00000492270 RGPD5Q99666 1765 aa34.67■■■■□ 3.14
UPF3A-209ENST00000492270 HDGFL2Q7Z4V5 671 aaPredicted RBP34.67■■■■□ 3.14
UPF3A-209ENST00000492270 THSD7AQ9UPZ6 1657 aa34.66■■■■□ 3.14
UPF3A-209ENST00000492270 ZBTB7CA1YPR0 619 aa34.65■■■■□ 3.14
UPF3A-209ENST00000492270 ONECUT3O60422 494 aaPredicted RBP34.65■■■■□ 3.14
UPF3A-209ENST00000492270 SLC24A1O60721 1099 aa34.65■■■■□ 3.14
UPF3A-209ENST00000492270 FAM98CQ17RN3 349 aaKnown RBP34.65■■■■□ 3.14
UPF3A-209ENST00000492270 ZRANB1Q9UGI0 708 aa34.65■■■■□ 3.14
UPF3A-209ENST00000492270 NFAT5O94916 1531 aa34.65■■■■□ 3.14
UPF3A-209ENST00000492270 EDC4Q6P2E9 1401 aaKnown RBP34.64■■■■□ 3.14
UPF3A-209ENST00000492270 TMF1P82094 1093 aa34.64■■■■□ 3.14
UPF3A-209ENST00000492270 NINLQ9Y2I6 1382 aa34.63■■■■□ 3.13
UPF3A-209ENST00000492270 TERF2IPQ9NYB0 399 aa34.63■■■■□ 3.13
UPF3A-209ENST00000492270 MYOM1P52179 1685 aa34.63■■■■□ 3.13
UPF3A-209ENST00000492270 NME9Q86XW9 330 aa34.62■■■■□ 3.13
UPF3A-209ENST00000492270 COL5A2P05997 1499 aaPredicted RBP34.61■■■■□ 3.13
UPF3A-209ENST00000492270 SOX12O15370 315 aa34.61■■■■□ 3.13
UPF3A-209ENST00000492270 SPATA31A1Q5TZJ5 1347 aa34.6■■■■□ 3.13
UPF3A-209ENST00000492270 LTN1O94822 1766 aa34.6■■■■□ 3.13
UPF3A-209ENST00000492270 A0A0G2JS52 829 aa34.6■■■■□ 3.13
UPF3A-209ENST00000492270 MYT1Q01538 1121 aa34.6■■■■□ 3.13
UPF3A-209ENST00000492270 USP31Q70CQ4 1352 aa34.59■■■■□ 3.13
UPF3A-209ENST00000492270 EVA1CP58658 441 aa34.58■■■■□ 3.13
UPF3A-209ENST00000492270 AATKQ6ZMQ8 1374 aa34.58■■■■□ 3.13
UPF3A-209ENST00000492270 LARP1Q6PKG0 1096 aaKnown RBP34.57■■■■□ 3.12
UPF3A-209ENST00000492270 KCNH5Q8NCM2 988 aa34.56■■■■□ 3.12
UPF3A-209ENST00000492270 USP35Q9P2H5 1018 aa34.54■■■■□ 3.12
UPF3A-209ENST00000492270 ANKRD36BQ8N2N9 1353 aa34.53■■■■□ 3.12
UPF3A-209ENST00000492270 KRT27Q7Z3Y8 459 aa34.53■■■■□ 3.12
UPF3A-209ENST00000492270 ARHGEF25Q86VW2 580 aa34.53■■■■□ 3.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms