RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CFAP53Q96M91 514 aa14.15□□□□□ -0.14
USP4-214ENST00000491791 SLAIN2Q9P270 581 aa14.15□□□□□ -0.14
USP4-214ENST00000491791 CPSF1Q10570 1443 aaKnown RBP14.15□□□□□ -0.14
USP4-214ENST00000491791 ADAMTS13Q76LX8 1427 aa14.15□□□□□ -0.14
USP4-214ENST00000491791 COL3A1P02461 1466 aaPredicted RBP14.14□□□□□ -0.15
USP4-214ENST00000491791 METP08581 1390 aa14.14□□□□□ -0.15
USP4-214ENST00000491791 C14orf37Q86TY3 774 aa14.14□□□□□ -0.15
USP4-214ENST00000491791 RUNDC1Q96C34 613 aa14.14□□□□□ -0.15
USP4-214ENST00000491791 MINK1Q8N4C8 1332 aaPredicted RBP14.14□□□□□ -0.15
USP4-214ENST00000491791 E9PSI1 815 aa14.13□□□□□ -0.15
USP4-214ENST00000491791 APAF1O14727 1248 aa14.13□□□□□ -0.15
USP4-214ENST00000491791 FYB1O15117 783 aa14.13□□□□□ -0.15
USP4-214ENST00000491791 MTHFSP49914 203 aa14.13□□□□□ -0.15
USP4-214ENST00000491791 HDGFL2Q7Z4V5 671 aaPredicted RBP14.13□□□□□ -0.15
USP4-214ENST00000491791 TBX22Q9Y458 520 aa14.13□□□□□ -0.15
USP4-214ENST00000491791 KIF20BQ96Q89 1820 aa14.13□□□□□ -0.15
USP4-214ENST00000491791 NCOA3Q9Y6Q9 1424 aa14.12□□□□□ -0.15
USP4-214ENST00000491791 JCADQ9P266 1359 aa14.11□□□□□ -0.15
USP4-214ENST00000491791 WASLO00401 505 aaPredicted RBP14.11□□□□□ -0.15
USP4-214ENST00000491791 DIP2AQ14689 1571 aa14.11□□□□□ -0.15
USP4-214ENST00000491791 B4GALNT3Q6L9W6 998 aa14.11□□□□□ -0.15
USP4-214ENST00000491791 CADPS2Q86UW7 1296 aa14.1□□□□□ -0.15
USP4-214ENST00000491791 WDR63Q8IWG1 891 aa14.1□□□□□ -0.15
USP4-214ENST00000491791 SALL2Q9Y467 1007 aaPredicted RBP14.1□□□□□ -0.15
USP4-214ENST00000491791 EDC4Q6P2E9 1401 aaKnown RBP14.09□□□□□ -0.15
USP4-214ENST00000491791 CHD2O14647 1828 aaKnown RBP14.09□□□□□ -0.15
USP4-214ENST00000491791 ATF3P18847 181 aa14.09□□□□□ -0.15
USP4-214ENST00000491791 SAFB2Q14151 953 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP4-214ENST00000491791 POTEAQ6S8J7 498 aa14.09□□□□□ -0.15
USP4-214ENST00000491791 WWC1Q8IX03 1113 aa14.09□□□□□ -0.15
USP4-214ENST00000491791 PHLPP1O60346 1717 aa14.09□□□□□ -0.15
USP4-214ENST00000491791 PIK3R4Q99570 1358 aa14.09□□□□□ -0.15
USP4-214ENST00000491791 MON2Q7Z3U7 1717 aa14.08□□□□□ -0.16
USP4-214ENST00000491791 CCDC136Q96JN2 1154 aa14.08□□□□□ -0.16
USP4-214ENST00000491791 CABP1Q9NZU7 370 aa14.08□□□□□ -0.16
USP4-214ENST00000491791 RBM19Q9Y4C8 960 aaKnown RBP14.08□□□□□ -0.16
USP4-214ENST00000491791 AKAP12Q02952 1782 aa14.08□□□□□ -0.16
USP4-214ENST00000491791 AATKQ6ZMQ8 1374 aa14.08□□□□□ -0.16
USP4-214ENST00000491791 WAPLQ7Z5K2 1190 aa14.07□□□□□ -0.16
USP4-214ENST00000491791 C19orf44Q9H6X5 657 aa14.07□□□□□ -0.16
USP4-214ENST00000491791 SENP3-EIF4A1A0A087X0R7 540 aa14.06□□□□□ -0.16
USP4-214ENST00000491791 MEX3CQ5U5Q3 659 aaKnown RBP14.06□□□□□ -0.16
USP4-214ENST00000491791 CCDC146Q8IYE0 955 aa14.06□□□□□ -0.16
USP4-214ENST00000491791 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.06□□□□□ -0.16
USP4-214ENST00000491791 ZNF692Q9BU19 519 aaPredicted RBP14.06□□□□□ -0.16
USP4-214ENST00000491791 SPATA31A6Q5VVP1 1343 aa14.06□□□□□ -0.16
USP4-214ENST00000491791 TOPAZ1Q8N9V7 1692 aa14.05□□□□□ -0.16
USP4-214ENST00000491791 TCP11L2Q8N4U5 519 aa14.05□□□□□ -0.16
USP4-214ENST00000491791 EXOC6Q8TAG9 804 aa14.05□□□□□ -0.16
USP4-214ENST00000491791 CCDC61Q9Y6R9 512 aa14.05□□□□□ -0.16
USP4-214ENST00000491791 PTCH1Q13635 1447 aa14.05□□□□□ -0.16
USP4-214ENST00000491791 PPIP5K1Q6PFW1 1433 aa14.05□□□□□ -0.16
USP4-214ENST00000491791 PLEKHF1Q96S99 279 aa14.04□□□□□ -0.16
USP4-214ENST00000491791 PNNQ9H307 717 aaKnown RBP14.04□□□□□ -0.16
USP4-214ENST00000491791 SPINK5Q9NQ38 1064 aaPredicted RBP14.04□□□□□ -0.16
USP4-214ENST00000491791 ROBO2Q9HCK4 1378 aa14.04□□□□□ -0.16
USP4-214ENST00000491791 ZNF772Q68DY9 489 aaPredicted RBP14.03□□□□□ -0.16
USP4-214ENST00000491791 NUDT16Q96DE0 195 aaKnown RBP14.03□□□□□ -0.16
USP4-214ENST00000491791 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.03□□□□□ -0.16
USP4-214ENST00000491791 COL16A1Q07092 1604 aaPredicted RBP14.02□□□□□ -0.16
USP4-214ENST00000491791 IL16Q14005 1332 aa14.02□□□□□ -0.17
USP4-214ENST00000491791 FANCIQ9NVI1 1328 aa14.02□□□□□ -0.17
USP4-214ENST00000491791 PLEKHG3A1L390 1219 aa14.02□□□□□ -0.17
USP4-214ENST00000491791 CT47B1P0C2W7 299 aaPredicted RBP14.02□□□□□ -0.17
USP4-214ENST00000491791 GGNBP2Q9H3C7 697 aa14.02□□□□□ -0.17
USP4-214ENST00000491791 AMOTL2Q9Y2J4 779 aa14.02□□□□□ -0.17
USP4-214ENST00000491791 ITSN1Q15811 1721 aa14.01□□□□□ -0.17
USP4-214ENST00000491791 CDK12Q9NYV4 1490 aaPredicted RBP14.01□□□□□ -0.17
USP4-214ENST00000491791 PTPRUQ92729 1446 aa14.01□□□□□ -0.17
USP4-214ENST00000491791 TNNT2P45379 298 aaPredicted RBP14.01□□□□□ -0.17
USP4-214ENST00000491791 AAMPQ13685 434 aa14.01□□□□□ -0.17
USP4-214ENST00000491791 NRKQ7Z2Y5 1582 aa14□□□□□ -0.17
USP4-214ENST00000491791 DIAPH1O60610 1272 aaKnown RBP14□□□□□ -0.17
USP4-214ENST00000491791 FCHSD2O94868 740 aa14□□□□□ -0.17
USP4-214ENST00000491791 PDE3AQ14432 1141 aa14□□□□□ -0.17
USP4-214ENST00000491791 XRN1Q8IZH2 1706 aaKnown RBP14□□□□□ -0.17
USP4-214ENST00000491791 AHDC1Q5TGY3 1603 aaPredicted RBP14□□□□□ -0.17
USP4-214ENST00000491791 DCCP43146 1447 aa13.98□□□□□ -0.17
USP4-214ENST00000491791 SSH2Q76I76 1423 aa13.98□□□□□ -0.17
USP4-214ENST00000491791 PRR36Q9H6K5 1346 aa13.98□□□□□ -0.17
USP4-214ENST00000491791 U2AF1L5P0DN76 240 aaPredicted RBP13.98□□□□□ -0.17
USP4-214ENST00000491791 MS4A1P11836 297 aa13.98□□□□□ -0.17
USP4-214ENST00000491791 U2AF1Q01081 240 aaKnown RBP eCLIP13.98□□□□□ -0.17
USP4-214ENST00000491791 CRBNQ96SW2 442 aa13.98□□□□□ -0.17
USP4-214ENST00000491791 POLKQ9UBT6 870 aa13.98□□□□□ -0.17
USP4-214ENST00000491791 BRINP3Q76B58 766 aa13.97□□□□□ -0.17
USP4-214ENST00000491791 MYH16Q9H6N6 1097 aa13.97□□□□□ -0.17
USP4-214ENST00000491791 KDM2BQ8NHM5 1336 aa13.96□□□□□ -0.17
USP4-214ENST00000491791 TCERG1O14776 1098 aaKnown RBP13.96□□□□□ -0.17
USP4-214ENST00000491791 PLIN1O60240 522 aa13.96□□□□□ -0.17
USP4-214ENST00000491791 TMPOP42166 694 aaKnown RBP13.96□□□□□ -0.17
USP4-214ENST00000491791 MAP2P11137 1827 aaKnown RBP13.96□□□□□ -0.17
USP4-214ENST00000491791 LRP6O75581 1613 aa13.96□□□□□ -0.17
USP4-214ENST00000491791 NALCNQ8IZF0 1738 aa13.95□□□□□ -0.18
USP4-214ENST00000491791 ANKARQ7Z5J8 1434 aa13.95□□□□□ -0.18
USP4-214ENST00000491791 OVOS2A0A0J9YW53 1432 aa13.94□□□□□ -0.18
USP4-214ENST00000491791 NUTM2BA6NNL0 878 aaPredicted RBP13.94□□□□□ -0.18
USP4-214ENST00000491791 NUTM2EB1AL46 878 aaPredicted RBP13.94□□□□□ -0.18
USP4-214ENST00000491791 RXRBP28702 533 aa13.94□□□□□ -0.18
USP4-214ENST00000491791 C20orf194Q5TEA3 1177 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms