RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 METRNQ9UJH8 293 aa9.53□□□□□ -0.88
SYNE1-229ENST00000490866 ADAMTS13Q76LX8 1427 aa9.53□□□□□ -0.88
SYNE1-229ENST00000490866 KIF7Q2M1P5 1343 aa9.53□□□□□ -0.88
SYNE1-229ENST00000490866 SLC26A8Q96RN1 970 aa9.52□□□□□ -0.89
SYNE1-229ENST00000490866 TERF2IPQ9NYB0 399 aa9.52□□□□□ -0.89
SYNE1-229ENST00000490866 TRIM35Q9UPQ4 493 aa9.52□□□□□ -0.89
SYNE1-229ENST00000490866 METP08581 1390 aa9.51□□□□□ -0.89
SYNE1-229ENST00000490866 PTCH1Q13635 1447 aa9.51□□□□□ -0.89
SYNE1-229ENST00000490866 RIOK3O14730 519 aaKnown RBP9.51□□□□□ -0.89
SYNE1-229ENST00000490866 HIRIP3Q9BW71 556 aaPredicted RBP9.51□□□□□ -0.89
SYNE1-229ENST00000490866 WASLO00401 505 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-229ENST00000490866 SRPK2P78362 688 aaKnown RBP9.5□□□□□ -0.89
SYNE1-229ENST00000490866 KNDC1Q76NI1 1749 aa9.49□□□□□ -0.89
SYNE1-229ENST00000490866 RALBP1Q15311 655 aa9.49□□□□□ -0.89
SYNE1-229ENST00000490866 KNSTRNQ9Y448 316 aa9.49□□□□□ -0.89
SYNE1-229ENST00000490866 CCER2I3L3R5 266 aa9.48□□□□□ -0.89
SYNE1-229ENST00000490866 ECM2O94769 699 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-229ENST00000490866 HDGFL2Q7Z4V5 671 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-229ENST00000490866 CDK19Q9BWU1 502 aa9.48□□□□□ -0.89
SYNE1-229ENST00000490866 NCKAP5LQ9HCH0 1330 aa9.48□□□□□ -0.89
SYNE1-229ENST00000490866 NRXN3Q9Y4C0 1643 aa9.48□□□□□ -0.89
SYNE1-229ENST00000490866 NPC1L1Q9UHC9 1359 aa9.48□□□□□ -0.89
SYNE1-229ENST00000490866 CPS1P31327 1500 aa9.47□□□□□ -0.89
SYNE1-229ENST00000490866 C11orf95C9JLR9 678 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-229ENST00000490866 SEC24BO95487 1268 aa9.47□□□□□ -0.89
SYNE1-229ENST00000490866 GOLGA2Q08379 1002 aa9.47□□□□□ -0.89
SYNE1-229ENST00000490866 POLR3GLQ9BT43 218 aa9.47□□□□□ -0.89
SYNE1-229ENST00000490866 C19orf44Q9H6X5 657 aa9.47□□□□□ -0.89
SYNE1-229ENST00000490866 SETD1AO15047 1707 aaKnown RBP9.47□□□□□ -0.89
SYNE1-229ENST00000490866 BRD4O60885 1362 aaPredicted RBP9.47□□□□□ -0.89
SYNE1-229ENST00000490866 LMTK3Q96Q04 1460 aa9.47□□□□□ -0.89
SYNE1-229ENST00000490866 ARHGEF28Q8N1W1 1705 aaKnown RBP9.46□□□□□ -0.89
SYNE1-229ENST00000490866 WAPLQ7Z5K2 1190 aa9.46□□□□□ -0.9
SYNE1-229ENST00000490866 PANK3Q9H999 370 aa9.46□□□□□ -0.9
SYNE1-229ENST00000490866 CHD2O14647 1828 aaKnown RBP9.46□□□□□ -0.9
SYNE1-229ENST00000490866 MAMSTRQ6ZN01 415 aa9.45□□□□□ -0.9
SYNE1-229ENST00000490866 PROSER2Q86WR7 435 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-229ENST00000490866 TMC1Q8TDI8 760 aa9.45□□□□□ -0.9
SYNE1-229ENST00000490866 NKTRP30414 1462 aaKnown RBP9.45□□□□□ -0.9
SYNE1-229ENST00000490866 QRICH2Q9H0J4 1663 aa9.45□□□□□ -0.9
SYNE1-229ENST00000490866 PLEKHG3A1L390 1219 aa9.44□□□□□ -0.9
SYNE1-229ENST00000490866 PER1O15534 1290 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-229ENST00000490866 MKRN3Q13064 507 aaKnown RBP9.44□□□□□ -0.9
SYNE1-229ENST00000490866 CADPS2Q86UW7 1296 aa9.44□□□□□ -0.9
SYNE1-229ENST00000490866 CGNL1Q0VF96 1302 aa9.44□□□□□ -0.9
SYNE1-229ENST00000490866 MINK1Q8N4C8 1332 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-229ENST00000490866 ROBO2Q9HCK4 1378 aa9.44□□□□□ -0.9
SYNE1-229ENST00000490866 DISP3Q9P2K9 1392 aa9.44□□□□□ -0.9
SYNE1-229ENST00000490866 ASXL1Q8IXJ9 1541 aa9.43□□□□□ -0.9
SYNE1-229ENST00000490866 ANKARQ7Z5J8 1434 aa9.43□□□□□ -0.9
SYNE1-229ENST00000490866 NSD2O96028 1365 aa9.43□□□□□ -0.9
SYNE1-229ENST00000490866 ANKRD36BQ8N2N9 1353 aa9.43□□□□□ -0.9
SYNE1-229ENST00000490866 ATF3P18847 181 aa9.43□□□□□ -0.9
SYNE1-229ENST00000490866 C14orf37Q86TY3 774 aa9.43□□□□□ -0.9
SYNE1-229ENST00000490866 NUDT16Q96DE0 195 aaKnown RBP9.43□□□□□ -0.9
SYNE1-229ENST00000490866 OCEL1Q9H607 264 aa9.43□□□□□ -0.9
SYNE1-229ENST00000490866 ADGRB2O60241 1585 aa9.42□□□□□ -0.9
SYNE1-229ENST00000490866 HSPA2P54652 639 aa9.42□□□□□ -0.9
SYNE1-229ENST00000490866 SAFB2Q14151 953 aaKnown RBP eCLIP9.42□□□□□ -0.9
SYNE1-229ENST00000490866 RNF25Q96BH1 459 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-229ENST00000490866 CABP2Q9NPB3 220 aa9.42□□□□□ -0.9
SYNE1-229ENST00000490866 DCCP43146 1447 aa9.41□□□□□ -0.9
SYNE1-229ENST00000490866 PTPRUQ92729 1446 aa9.41□□□□□ -0.9
SYNE1-229ENST00000490866 PLCG2P16885 1265 aa9.41□□□□□ -0.9
SYNE1-229ENST00000490866 IRX5P78411 483 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-229ENST00000490866 PRKRIP1Q9H875 184 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-229ENST00000490866 XRN1Q8IZH2 1706 aaKnown RBP9.41□□□□□ -0.9
SYNE1-229ENST00000490866 ATP7BP35670 1465 aa9.4□□□□□ -0.9
SYNE1-229ENST00000490866 SLC12A5Q9H2X9 1139 aa9.4□□□□□ -0.9
SYNE1-229ENST00000490866 CABP1Q9NZU7 370 aa9.4□□□□□ -0.9
SYNE1-229ENST00000490866 NWD1Q149M9 1564 aa9.4□□□□□ -0.9
SYNE1-229ENST00000490866 POTEFA5A3E0 1075 aa9.39□□□□□ -0.91
SYNE1-229ENST00000490866 PSME1Q06323 249 aa9.39□□□□□ -0.91
SYNE1-229ENST00000490866 COLQQ9Y215 455 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-229ENST00000490866 ADGRL3Q9HAR2 1447 aa9.39□□□□□ -0.91
SYNE1-229ENST00000490866 MSH6P52701 1360 aa9.38□□□□□ -0.91
SYNE1-229ENST00000490866 TTC21AQ8NDW8 1320 aa9.38□□□□□ -0.91
SYNE1-229ENST00000490866 MYBBP1AQ9BQG0 1328 aaKnown RBP9.38□□□□□ -0.91
SYNE1-229ENST00000490866 TULP4Q9NRJ4 1543 aa9.38□□□□□ -0.91
SYNE1-229ENST00000490866 POTEB2H3BUK9 544 aa9.38□□□□□ -0.91
SYNE1-229ENST00000490866 NLRP13Q86W25 1043 aa9.38□□□□□ -0.91
SYNE1-229ENST00000490866 NGDNQ8NEJ9 315 aaKnown RBP9.38□□□□□ -0.91
SYNE1-229ENST00000490866 PLEKHH1Q9ULM0 1364 aa9.37□□□□□ -0.91
SYNE1-229ENST00000490866 AMER1Q5JTC6 1135 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-229ENST00000490866 ILDR1Q86SU0 546 aaPredicted RBP9.37□□□□□ -0.91
SYNE1-229ENST00000490866 PPIP5K1Q6PFW1 1433 aa9.37□□□□□ -0.91
SYNE1-229ENST00000490866 STRCQ7RTU9 1775 aa9.37□□□□□ -0.91
SYNE1-229ENST00000490866 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-229ENST00000490866 ZFP91Q96JP5 570 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-229ENST00000490866 PHF8Q9UPP1 1060 aa9.36□□□□□ -0.91
SYNE1-229ENST00000490866 CPSF1Q10570 1443 aaKnown RBP9.36□□□□□ -0.91
SYNE1-229ENST00000490866 EDC4Q6P2E9 1401 aaKnown RBP9.36□□□□□ -0.91
SYNE1-229ENST00000490866 CDC42BPGQ6DT37 1551 aa9.36□□□□□ -0.91
SYNE1-229ENST00000490866 POLR3AO14802 1390 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-229ENST00000490866 SOX12O15370 315 aa9.35□□□□□ -0.91
SYNE1-229ENST00000490866 ITSN1Q15811 1721 aa9.35□□□□□ -0.91
SYNE1-229ENST00000490866 MORC1Q86VD1 984 aa9.35□□□□□ -0.91
SYNE1-229ENST00000490866 CFAP53Q96M91 514 aa9.35□□□□□ -0.91
SYNE1-229ENST00000490866 CARD14Q9BXL6 1004 aa9.35□□□□□ -0.91
SYNE1-229ENST00000490866 PNNQ9H307 717 aaKnown RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms