RNA–Protein interactions for RNA: ENST00000490800.1

CLDN1-202, Transcript of claudin 1, humanhuman

TSL 2

Gene CLDN1, Length 432 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-202ENST00000490800 PTCH1Q13635 1447 aa10.93□□□□□ -0.66
CLDN1-202ENST00000490800 ANKRD30BQ9BXX2 1392 aa10.93□□□□□ -0.66
CLDN1-202ENST00000490800 PDAP1Q13442 181 aaKnown RBP10.93□□□□□ -0.66
CLDN1-202ENST00000490800 ZRANB1Q9UGI0 708 aa10.93□□□□□ -0.66
CLDN1-202ENST00000490800 KDM2AQ9Y2K7 1162 aa10.92□□□□□ -0.66
CLDN1-202ENST00000490800 PPLO60437 1756 aa10.91□□□□□ -0.66
CLDN1-202ENST00000490800 NUTM2FA1L443 756 aa10.91□□□□□ -0.66
CLDN1-202ENST00000490800 ESCO1Q5FWF5 840 aa10.91□□□□□ -0.66
CLDN1-202ENST00000490800 CFAP70Q5T0N1 1121 aa10.91□□□□□ -0.66
CLDN1-202ENST00000490800 ZNF579Q8NAF0 562 aaKnown RBP10.91□□□□□ -0.66
CLDN1-202ENST00000490800 C14orf93Q9H972 538 aaKnown RBP10.91□□□□□ -0.66
CLDN1-202ENST00000490800 SOS2Q07890 1332 aaPredicted RBP10.9□□□□□ -0.66
CLDN1-202ENST00000490800 SETD1AO15047 1707 aaKnown RBP10.9□□□□□ -0.66
CLDN1-202ENST00000490800 NALCNQ8IZF0 1738 aa10.9□□□□□ -0.66
CLDN1-202ENST00000490800 MAP3K13O43283 966 aa10.9□□□□□ -0.66
CLDN1-202ENST00000490800 GTPBP6O43824 516 aaPredicted RBP10.9□□□□□ -0.66
CLDN1-202ENST00000490800 C8orf37Q96NL8 207 aa10.9□□□□□ -0.66
CLDN1-202ENST00000490800 PRAG1Q86YV5 1406 aa10.9□□□□□ -0.66
CLDN1-202ENST00000490800 LRPPRCP42704 1394 aaKnown RBP10.9□□□□□ -0.67
CLDN1-202ENST00000490800 PNPLA6Q8IY17 1366 aa10.9□□□□□ -0.67
CLDN1-202ENST00000490800 ABCC11Q96J66 1382 aa10.9□□□□□ -0.67
CLDN1-202ENST00000490800 AFF2P51816 1311 aa10.89□□□□□ -0.67
CLDN1-202ENST00000490800 ADAMTS2O95450 1211 aa10.89□□□□□ -0.67
CLDN1-202ENST00000490800 RXRBP28702 533 aa10.89□□□□□ -0.67
CLDN1-202ENST00000490800 PSEN1P49768 467 aa10.89□□□□□ -0.67
CLDN1-202ENST00000490800 IFNL1Q8IU54 200 aa10.89□□□□□ -0.67
CLDN1-202ENST00000490800 SIN3AQ96ST3 1273 aa10.89□□□□□ -0.67
CLDN1-202ENST00000490800 PLEKHH1Q9ULM0 1364 aa10.89□□□□□ -0.67
CLDN1-202ENST00000490800 SHPRHQ149N8 1683 aa10.89□□□□□ -0.67
CLDN1-202ENST00000490800 FOXO3O43524 673 aa10.88□□□□□ -0.67
CLDN1-202ENST00000490800 SIRT1Q96EB6 747 aa10.88□□□□□ -0.67
CLDN1-202ENST00000490800 KIF12Q96FN5 646 aa10.88□□□□□ -0.67
CLDN1-202ENST00000490800 NGLY1Q96IV0 654 aa10.88□□□□□ -0.67
CLDN1-202ENST00000490800 PHF12Q96QT6 1004 aa10.88□□□□□ -0.67
CLDN1-202ENST00000490800 QTRT2Q9H974 415 aaKnown RBP10.88□□□□□ -0.67
CLDN1-202ENST00000490800 NHSL1Q5SYE7 1610 aa10.87□□□□□ -0.67
CLDN1-202ENST00000490800 PIK3C2GO75747 1445 aa10.87□□□□□ -0.67
CLDN1-202ENST00000490800 YTHDC2Q9H6S0 1430 aaKnown RBP10.87□□□□□ -0.67
CLDN1-202ENST00000490800 XPCQ01831 940 aaPredicted RBP10.87□□□□□ -0.67
CLDN1-202ENST00000490800 SP7Q8TDD2 431 aaPredicted RBP10.87□□□□□ -0.67
CLDN1-202ENST00000490800 TECPR2O15040 1411 aa10.86□□□□□ -0.67
CLDN1-202ENST00000490800 NEUROD1Q13562 356 aa10.86□□□□□ -0.67
CLDN1-202ENST00000490800 NPHP3Q7Z494 1330 aa10.85□□□□□ -0.67
CLDN1-202ENST00000490800 SAFB2Q14151 953 aaKnown RBP eCLIP10.85□□□□□ -0.67
CLDN1-202ENST00000490800 RBM6P78332 1123 aaKnown RBP10.84□□□□□ -0.67
CLDN1-202ENST00000490800 DCAF11Q8TEB1 546 aa10.84□□□□□ -0.67
CLDN1-202ENST00000490800 PRAM1Q96QH2 718 aa10.84□□□□□ -0.67
CLDN1-202ENST00000490800 RYDENQ9NUL5 291 aaKnown RBP10.84□□□□□ -0.67
CLDN1-202ENST00000490800 KRT28Q7Z3Y7 464 aa10.83□□□□□ -0.68
CLDN1-202ENST00000490800 UPF1Q92900 1129 aaKnown RBP eCLIP10.83□□□□□ -0.68
CLDN1-202ENST00000490800 POGKQ9P215 609 aa10.83□□□□□ -0.68
CLDN1-202ENST00000490800 USP21Q9UK80 565 aa10.83□□□□□ -0.68
CLDN1-202ENST00000490800 TIMELESSQ9UNS1 1208 aa10.83□□□□□ -0.68
CLDN1-202ENST00000490800 IFT172Q9UG01 1749 aa10.83□□□□□ -0.68
CLDN1-202ENST00000490800 NRXN1Q9ULB1 1477 aa10.82□□□□□ -0.68
CLDN1-202ENST00000490800 FNBP4Q8N3X1 1017 aaPredicted RBP10.82□□□□□ -0.68
CLDN1-202ENST00000490800 TRAK1Q9UPV9 953 aa10.82□□□□□ -0.68
CLDN1-202ENST00000490800 CDC42BPGQ6DT37 1551 aa10.82□□□□□ -0.68
CLDN1-202ENST00000490800 LAMC1P11047 1609 aa10.81□□□□□ -0.68
CLDN1-202ENST00000490800 PHF8Q9UPP1 1060 aa10.81□□□□□ -0.68
CLDN1-202ENST00000490800 MYOM2P54296 1465 aa10.81□□□□□ -0.68
CLDN1-202ENST00000490800 TRPC5Q9UL62 973 aaPredicted RBP10.8□□□□□ -0.68
CLDN1-202ENST00000490800 SPATA31A3Q5VYP0 1347 aa10.8□□□□□ -0.68
CLDN1-202ENST00000490800 PXDNQ92626 1479 aa10.8□□□□□ -0.68
CLDN1-202ENST00000490800 TONSLQ96HA7 1378 aa10.79□□□□□ -0.68
CLDN1-202ENST00000490800 PSME1Q06323 249 aa10.79□□□□□ -0.68
CLDN1-202ENST00000490800 PMFBP1Q8TBY8 1022 aa10.79□□□□□ -0.68
CLDN1-202ENST00000490800 STAC3Q96MF2 364 aa10.79□□□□□ -0.68
CLDN1-202ENST00000490800 HIRIP3Q9BW71 556 aaPredicted RBP10.79□□□□□ -0.68
CLDN1-202ENST00000490800 C19orf67A6NJJ6 358 aa10.78□□□□□ -0.68
CLDN1-202ENST00000490800 CABP2Q9NPB3 220 aa10.78□□□□□ -0.68
CLDN1-202ENST00000490800 CDK12Q9NYV4 1490 aaPredicted RBP10.78□□□□□ -0.68
CLDN1-202ENST00000490800 MINK1Q8N4C8 1332 aaPredicted RBP10.78□□□□□ -0.68
CLDN1-202ENST00000490800 LMOD2Q6P5Q4 547 aa10.77□□□□□ -0.69
CLDN1-202ENST00000490800 CABLES1Q8TDN4 633 aa10.77□□□□□ -0.69
CLDN1-202ENST00000490800 KNDC1Q76NI1 1749 aa10.77□□□□□ -0.69
CLDN1-202ENST00000490800 RGS12O14924 1447 aa10.75□□□□□ -0.69
CLDN1-202ENST00000490800 FMN2Q9NZ56 1722 aa10.75□□□□□ -0.69
CLDN1-202ENST00000490800 BCL9LQ86UU0 1499 aa10.75□□□□□ -0.69
CLDN1-202ENST00000490800 ADGRB1O14514 1584 aa10.75□□□□□ -0.69
CLDN1-202ENST00000490800 WASLO00401 505 aaPredicted RBP10.75□□□□□ -0.69
CLDN1-202ENST00000490800 L3MBTL2Q969R5 705 aa10.75□□□□□ -0.69
CLDN1-202ENST00000490800 DLC1Q96QB1 1528 aa10.74□□□□□ -0.69
CLDN1-202ENST00000490800 COL22A1Q8NFW1 1626 aaPredicted RBP10.74□□□□□ -0.69
CLDN1-202ENST00000490800 HAX1O00165 279 aa10.74□□□□□ -0.69
CLDN1-202ENST00000490800 MS4A3Q96HJ5 214 aa10.74□□□□□ -0.69
CLDN1-202ENST00000490800 GJD4Q96KN9 370 aaPredicted RBP10.74□□□□□ -0.69
CLDN1-202ENST00000490800 MFRPQ9BY79 579 aa10.74□□□□□ -0.69
CLDN1-202ENST00000490800 PRR36Q9H6K5 1346 aa10.74□□□□□ -0.69
CLDN1-202ENST00000490800 ATRNO75882 1429 aa10.74□□□□□ -0.69
CLDN1-202ENST00000490800 UNC5CLQ8IV45 518 aa10.73□□□□□ -0.69
CLDN1-202ENST00000490800 EFCAB3Q8N7B9 438 aa10.73□□□□□ -0.69
CLDN1-202ENST00000490800 SBNO1A3KN83 1393 aa10.73□□□□□ -0.69
CLDN1-202ENST00000490800 NBPF1Q3BBV0 1214 aa10.72□□□□□ -0.69
CLDN1-202ENST00000490800 NGDNQ8NEJ9 315 aaKnown RBP10.72□□□□□ -0.69
CLDN1-202ENST00000490800 TNS3Q68CZ2 1445 aa10.72□□□□□ -0.69
CLDN1-202ENST00000490800 RGPD8O14715 1765 aaPredicted RBP10.72□□□□□ -0.69
CLDN1-202ENST00000490800 FAM83GA6ND36 823 aa10.71□□□□□ -0.69
CLDN1-202ENST00000490800 ANKARQ7Z5J8 1434 aa10.71□□□□□ -0.69
CLDN1-202ENST00000490800 NUDT16Q96DE0 195 aaKnown RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms