RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 PRDM11Q9NQV5 511 aa13.91□□□□□ -0.18
COL17A1-207ENST00000488320 STRN4Q9NRL3 753 aa13.91□□□□□ -0.18
COL17A1-207ENST00000488320 POGKQ9P215 609 aa13.91□□□□□ -0.18
COL17A1-207ENST00000488320 ANKRD30BQ9BXX2 1392 aa13.91□□□□□ -0.18
COL17A1-207ENST00000488320 ADGRB2O60241 1585 aa13.91□□□□□ -0.18
COL17A1-207ENST00000488320 KCNQ2O43526 872 aa13.9□□□□□ -0.18
COL17A1-207ENST00000488320 PAK3O75914 559 aaPredicted RBP13.9□□□□□ -0.18
COL17A1-207ENST00000488320 GPRASP1Q5JY77 1395 aa13.9□□□□□ -0.18
COL17A1-207ENST00000488320 PARD3Q8TEW0 1356 aa13.9□□□□□ -0.18
COL17A1-207ENST00000488320 DHX57Q6P158 1386 aaKnown RBP13.89□□□□□ -0.19
COL17A1-207ENST00000488320 PRAM1Q96QH2 718 aa13.89□□□□□ -0.19
COL17A1-207ENST00000488320 USP35Q9P2H5 1018 aa13.89□□□□□ -0.19
COL17A1-207ENST00000488320 EVA1CP58658 441 aa13.88□□□□□ -0.19
COL17A1-207ENST00000488320 SPATA31A1Q5TZJ5 1347 aa13.88□□□□□ -0.19
COL17A1-207ENST00000488320 NGDNQ8NEJ9 315 aaKnown RBP13.87□□□□□ -0.19
COL17A1-207ENST00000488320 THSD7AQ9UPZ6 1657 aa13.86□□□□□ -0.19
COL17A1-207ENST00000488320 CHRNA2Q15822 529 aa13.86□□□□□ -0.19
COL17A1-207ENST00000488320 CFAP70Q5T0N1 1121 aa13.86□□□□□ -0.19
COL17A1-207ENST00000488320 C14orf93Q9H972 538 aaKnown RBP13.86□□□□□ -0.19
COL17A1-207ENST00000488320 NINLQ9Y2I6 1382 aa13.84□□□□□ -0.19
COL17A1-207ENST00000488320 PIK3C2GO75747 1445 aa13.84□□□□□ -0.19
COL17A1-207ENST00000488320 SENP3-EIF4A1A0A087X0R7 540 aa13.84□□□□□ -0.19
COL17A1-207ENST00000488320 ZC3H6P61129 1189 aaKnown RBP13.84□□□□□ -0.19
COL17A1-207ENST00000488320 HIRIP3Q9BW71 556 aaPredicted RBP13.84□□□□□ -0.19
COL17A1-207ENST00000488320 ACIN1Q9UKV3 1341 aaKnown RBP13.84□□□□□ -0.19
COL17A1-207ENST00000488320 ANKARQ7Z5J8 1434 aa13.83□□□□□ -0.2
COL17A1-207ENST00000488320 TRPM3Q9HCF6 1732 aaPredicted RBP13.83□□□□□ -0.2
COL17A1-207ENST00000488320 KIAA0232Q92628 1395 aa13.83□□□□□ -0.2
COL17A1-207ENST00000488320 RREB1Q92766 1687 aa13.82□□□□□ -0.2
COL17A1-207ENST00000488320 ALS2Q96Q42 1657 aa13.82□□□□□ -0.2
COL17A1-207ENST00000488320 NUP188Q5SRE5 1749 aa13.82□□□□□ -0.2
COL17A1-207ENST00000488320 POTEDQ86YR6 584 aa13.82□□□□□ -0.2
COL17A1-207ENST00000488320 ZNF784Q8NCA9 323 aaPredicted RBP13.82□□□□□ -0.2
COL17A1-207ENST00000488320 SPATA31E1Q6ZUB1 1445 aa13.81□□□□□ -0.2
COL17A1-207ENST00000488320 MINK1Q8N4C8 1332 aaPredicted RBP13.81□□□□□ -0.2
COL17A1-207ENST00000488320 CAMTA1Q9Y6Y1 1673 aa13.8□□□□□ -0.2
COL17A1-207ENST00000488320 BARGINQ6ZT62 677 aa13.8□□□□□ -0.2
COL17A1-207ENST00000488320 TRAK1Q9UPV9 953 aa13.8□□□□□ -0.2
COL17A1-207ENST00000488320 NUTM2GQ5VZR2 741 aa13.79□□□□□ -0.2
COL17A1-207ENST00000488320 EIF3AQ14152 1382 aaKnown RBP13.79□□□□□ -0.2
COL17A1-207ENST00000488320 WASLO00401 505 aaPredicted RBP13.78□□□□□ -0.2
COL17A1-207ENST00000488320 TCP11L2Q8N4U5 519 aa13.78□□□□□ -0.2
COL17A1-207ENST00000488320 MPHOSPH9Q99550 1183 aa13.78□□□□□ -0.2
COL17A1-207ENST00000488320 C11orf95C9JLR9 678 aaPredicted RBP13.77□□□□□ -0.21
COL17A1-207ENST00000488320 IFFO2Q5TF58 517 aa13.77□□□□□ -0.21
COL17A1-207ENST00000488320 LARP1Q6PKG0 1096 aaKnown RBP13.77□□□□□ -0.21
COL17A1-207ENST00000488320 PRR36Q9H6K5 1346 aa13.77□□□□□ -0.21
COL17A1-207ENST00000488320 ZBTB7AO95365 584 aa13.76□□□□□ -0.21
COL17A1-207ENST00000488320 C1QTNF8P60827 252 aa13.76□□□□□ -0.21
COL17A1-207ENST00000488320 BCL11BQ9C0K0 894 aaPredicted RBP13.76□□□□□ -0.21
COL17A1-207ENST00000488320 CRYBG1Q9Y4K1 1723 aa13.76□□□□□ -0.21
COL17A1-207ENST00000488320 SSH2Q76I76 1423 aa13.75□□□□□ -0.21
COL17A1-207ENST00000488320 ATF5Q9Y2D1 282 aaPredicted RBP13.75□□□□□ -0.21
COL17A1-207ENST00000488320 THRAP3Q9Y2W1 955 aaKnown RBP13.75□□□□□ -0.21
COL17A1-207ENST00000488320 DLC1Q96QB1 1528 aa13.74□□□□□ -0.21
COL17A1-207ENST00000488320 PLSCR1O15162 318 aa13.74□□□□□ -0.21
COL17A1-207ENST00000488320 NUDT16Q96DE0 195 aaKnown RBP13.73□□□□□ -0.21
COL17A1-207ENST00000488320 TULP4Q9NRJ4 1543 aa13.73□□□□□ -0.21
COL17A1-207ENST00000488320 NRKQ7Z2Y5 1582 aa13.72□□□□□ -0.21
COL17A1-207ENST00000488320 ZBTB7CA1YPR0 619 aa13.72□□□□□ -0.21
COL17A1-207ENST00000488320 ABTB2Q8N961 1025 aa13.72□□□□□ -0.21
COL17A1-207ENST00000488320 PDGFDQ9GZP0 370 aaPredicted RBP13.72□□□□□ -0.21
COL17A1-207ENST00000488320 ANO8Q9HCE9 1232 aaPredicted RBP13.72□□□□□ -0.21
COL17A1-207ENST00000488320 PHRF1Q9P1Y6 1649 aaKnown RBP13.72□□□□□ -0.21
COL17A1-207ENST00000488320 CHD4Q14839 1912 aa13.71□□□□□ -0.21
COL17A1-207ENST00000488320 SYT17Q9BSW7 474 aa13.71□□□□□ -0.21
COL17A1-207ENST00000488320 STK32BQ9NY57 414 aa13.71□□□□□ -0.21
COL17A1-207ENST00000488320 UTRNP46939 3433 aa13.7□□□□□ -0.22
COL17A1-207ENST00000488320 PTGER2P43116 358 aa13.7□□□□□ -0.22
COL17A1-207ENST00000488320 DDB1Q16531 1140 aa13.7□□□□□ -0.22
COL17A1-207ENST00000488320 PIAS4Q8N2W9 510 aaPredicted RBP13.7□□□□□ -0.22
COL17A1-207ENST00000488320 FHDC1Q9C0D6 1143 aaPredicted RBP13.7□□□□□ -0.22
COL17A1-207ENST00000488320 KDM2AQ9Y2K7 1162 aa13.7□□□□□ -0.22
COL17A1-207ENST00000488320 OVOS2A0A0G2JMS6 1433 aa13.69□□□□□ -0.22
COL17A1-207ENST00000488320 OVOS2A0A0J9YW53 1432 aa13.69□□□□□ -0.22
COL17A1-207ENST00000488320 OVOS2Q6IE36 1432 aa13.69□□□□□ -0.22
COL17A1-207ENST00000488320 ATP7BP35670 1465 aa13.68□□□□□ -0.22
COL17A1-207ENST00000488320 ITSN1Q15811 1721 aa13.68□□□□□ -0.22
COL17A1-207ENST00000488320 MYOM1P52179 1685 aa13.68□□□□□ -0.22
COL17A1-207ENST00000488320 CASZ1Q86V15 1759 aa13.68□□□□□ -0.22
COL17A1-207ENST00000488320 ACEP12821 1306 aa13.67□□□□□ -0.22
COL17A1-207ENST00000488320 NLRP13Q86W25 1043 aa13.67□□□□□ -0.22
COL17A1-207ENST00000488320 CDK19Q9BWU1 502 aa13.67□□□□□ -0.22
COL17A1-207ENST00000488320 PARP4Q9UKK3 1724 aaKnown RBP13.67□□□□□ -0.22
COL17A1-207ENST00000488320 SBF2Q86WG5 1849 aa13.67□□□□□ -0.22
COL17A1-207ENST00000488320 GIGYF1O75420 1035 aaPredicted RBP13.66□□□□□ -0.22
COL17A1-207ENST00000488320 GCP02774 474 aa13.66□□□□□ -0.22
COL17A1-207ENST00000488320 SLC15A2Q16348 729 aa13.66□□□□□ -0.22
COL17A1-207ENST00000488320 GPR162Q16538 588 aa13.66□□□□□ -0.22
COL17A1-207ENST00000488320 TOM1L2Q6ZVM7 507 aa13.66□□□□□ -0.22
COL17A1-207ENST00000488320 PTF1AQ7RTS3 328 aa13.66□□□□□ -0.22
COL17A1-207ENST00000488320 PROM2Q8N271 834 aa13.66□□□□□ -0.22
COL17A1-207ENST00000488320 MTFR1LQ9H019 292 aa13.65□□□□□ -0.22
COL17A1-207ENST00000488320 CPDO75976 1380 aa13.65□□□□□ -0.22
COL17A1-207ENST00000488320 RGPD3A6NKT7 1758 aaPredicted RBP13.65□□□□□ -0.22
COL17A1-207ENST00000488320 RGPD4Q7Z3J3 1758 aa13.65□□□□□ -0.22
COL17A1-207ENST00000488320 CRB1P82279 1406 aa13.64□□□□□ -0.23
COL17A1-207ENST00000488320 ADGRB1O14514 1584 aa13.64□□□□□ -0.23
COL17A1-207ENST00000488320 TXNRD1Q16881 649 aa13.64□□□□□ -0.23
COL17A1-207ENST00000488320 ARXQ96QS3 562 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms