RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 TOPAZ1Q8N9V7 1692 aa17.7■□□□□ 0.42
SDC3-204ENST00000487984 ACEP12821 1306 aa17.7■□□□□ 0.42
SDC3-204ENST00000487984 NWD2Q9ULI1 1742 aa17.69■□□□□ 0.42
SDC3-204ENST00000487984 PLEKHG3A1L390 1219 aa17.69■□□□□ 0.42
SDC3-204ENST00000487984 CCDC9Q9Y3X0 531 aaKnown RBP17.69■□□□□ 0.42
SDC3-204ENST00000487984 EP400Q96L91 3159 aa17.68■□□□□ 0.42
SDC3-204ENST00000487984 SRPK2P78362 688 aaKnown RBP17.68■□□□□ 0.42
SDC3-204ENST00000487984 NBPF8Q3BBV2 869 aa17.68■□□□□ 0.42
SDC3-204ENST00000487984 BTG4Q9NY30 223 aa17.68■□□□□ 0.42
SDC3-204ENST00000487984 SEPT12Q8IYM1 358 aa17.67■□□□□ 0.42
SDC3-204ENST00000487984 CABP2Q9NPB3 220 aa17.67■□□□□ 0.42
SDC3-204ENST00000487984 CRYBG1Q9Y4K1 1723 aa17.67■□□□□ 0.42
SDC3-204ENST00000487984 NUTM2GQ5VZR2 741 aa17.66■□□□□ 0.42
SDC3-204ENST00000487984 PPIP5K1Q6PFW1 1433 aa17.65■□□□□ 0.42
SDC3-204ENST00000487984 ONECUT3O60422 494 aaPredicted RBP17.65■□□□□ 0.42
SDC3-204ENST00000487984 PRDM11Q9NQV5 511 aa17.65■□□□□ 0.42
SDC3-204ENST00000487984 COL14A1Q05707 1796 aaKnown RBP17.65■□□□□ 0.42
SDC3-204ENST00000487984 ROCK2O75116 1388 aaKnown RBP17.65■□□□□ 0.42
SDC3-204ENST00000487984 TRPM1Q7Z4N2 1603 aa17.65■□□□□ 0.42
SDC3-204ENST00000487984 NRAPQ86VF7 1730 aa17.64■□□□□ 0.41
SDC3-204ENST00000487984 QRICH2Q9H0J4 1663 aa17.64■□□□□ 0.41
SDC3-204ENST00000487984 KIAA0232Q92628 1395 aa17.64■□□□□ 0.41
SDC3-204ENST00000487984 CCDC125Q86Z20 511 aa17.62■□□□□ 0.41
SDC3-204ENST00000487984 ZC3H6P61129 1189 aaKnown RBP17.61■□□□□ 0.41
SDC3-204ENST00000487984 CHRNA2Q15822 529 aa17.61■□□□□ 0.41
SDC3-204ENST00000487984 FAM98CQ17RN3 349 aaKnown RBP17.61■□□□□ 0.41
SDC3-204ENST00000487984 ABTB2Q8N961 1025 aa17.61■□□□□ 0.41
SDC3-204ENST00000487984 PHRF1Q9P1Y6 1649 aaKnown RBP17.61■□□□□ 0.41
SDC3-204ENST00000487984 KRT27Q7Z3Y8 459 aa17.6■□□□□ 0.41
SDC3-204ENST00000487984 CABP1Q9NZU7 370 aa17.6■□□□□ 0.41
SDC3-204ENST00000487984 SPATA31A5Q5VU36 1347 aa17.6■□□□□ 0.41
SDC3-204ENST00000487984 EVC2Q86UK5 1308 aa17.6■□□□□ 0.41
SDC3-204ENST00000487984 SPATA31A7Q8IWB4 1347 aa17.6■□□□□ 0.41
SDC3-204ENST00000487984 BLMP54132 1417 aaPredicted RBP17.59■□□□□ 0.41
SDC3-204ENST00000487984 USP19O94966 1318 aa17.59■□□□□ 0.41
SDC3-204ENST00000487984 A0A0G2JS52 829 aa17.59■□□□□ 0.41
SDC3-204ENST00000487984 MYT1Q01538 1121 aa17.59■□□□□ 0.41
SDC3-204ENST00000487984 BRWD3Q6RI45 1802 aa17.58■□□□□ 0.41
SDC3-204ENST00000487984 NRKQ7Z2Y5 1582 aa17.57■□□□□ 0.4
SDC3-204ENST00000487984 USP6P35125 1406 aa17.57■□□□□ 0.4
SDC3-204ENST00000487984 BRD4O60885 1362 aaPredicted RBP17.57■□□□□ 0.4
SDC3-204ENST00000487984 NLRP13Q86W25 1043 aa17.56■□□□□ 0.4
SDC3-204ENST00000487984 STRN4Q9NRL3 753 aa17.56■□□□□ 0.4
SDC3-204ENST00000487984 CPDO75976 1380 aa17.55■□□□□ 0.4
SDC3-204ENST00000487984 TONSLQ96HA7 1378 aa17.54■□□□□ 0.4
SDC3-204ENST00000487984 SPATA31A1Q5TZJ5 1347 aa17.54■□□□□ 0.4
SDC3-204ENST00000487984 GCP02774 474 aa17.54■□□□□ 0.4
SDC3-204ENST00000487984 SSH2Q76I76 1423 aa17.54■□□□□ 0.4
SDC3-204ENST00000487984 TRIM26Q12899 539 aaPredicted RBP17.53■□□□□ 0.4
SDC3-204ENST00000487984 CARD11Q9BXL7 1154 aa17.53■□□□□ 0.4
SDC3-204ENST00000487984 THSD7AQ9UPZ6 1657 aa17.52■□□□□ 0.4
SDC3-204ENST00000487984 SF3B2Q13435 895 aaKnown RBP17.52■□□□□ 0.4
SDC3-204ENST00000487984 DEFB132Q7Z7B7 95 aa17.52■□□□□ 0.4
SDC3-204ENST00000487984 ZRANB1Q9UGI0 708 aa17.52■□□□□ 0.4
SDC3-204ENST00000487984 CAMTA1Q9Y6Y1 1673 aa17.52■□□□□ 0.39
SDC3-204ENST00000487984 NLRP6P59044 892 aa17.51■□□□□ 0.39
SDC3-204ENST00000487984 SBNO2Q9Y2G9 1366 aa17.51■□□□□ 0.39
SDC3-204ENST00000487984 EVA1CP58658 441 aa17.5■□□□□ 0.39
SDC3-204ENST00000487984 FAM182BQ5T319 152 aa17.5■□□□□ 0.39
SDC3-204ENST00000487984 LARP1Q6PKG0 1096 aaKnown RBP17.5■□□□□ 0.39
SDC3-204ENST00000487984 USP35Q9P2H5 1018 aa17.5■□□□□ 0.39
SDC3-204ENST00000487984 LMO7Q8WWI1 1683 aa17.5■□□□□ 0.39
SDC3-204ENST00000487984 SRCAPQ6ZRS2 3230 aa17.49■□□□□ 0.39
SDC3-204ENST00000487984 SLIT3O75094 1523 aa17.49■□□□□ 0.39
SDC3-204ENST00000487984 ZNF692Q9BU19 519 aaPredicted RBP17.49■□□□□ 0.39
SDC3-204ENST00000487984 TTC21BQ7Z4L5 1316 aa17.48■□□□□ 0.39
SDC3-204ENST00000487984 PIK3C2AO00443 1686 aa17.48■□□□□ 0.39
SDC3-204ENST00000487984 CPSF1Q10570 1443 aaKnown RBP17.47■□□□□ 0.39
SDC3-204ENST00000487984 ZBTB7CA1YPR0 619 aa17.47■□□□□ 0.39
SDC3-204ENST00000487984 BARGINQ6ZT62 677 aa17.47■□□□□ 0.39
SDC3-204ENST00000487984 COL5A2P05997 1499 aaPredicted RBP17.46■□□□□ 0.39
SDC3-204ENST00000487984 AATKQ6ZMQ8 1374 aa17.45■□□□□ 0.38
SDC3-204ENST00000487984 KTN1Q86UP2 1357 aaKnown RBP17.45■□□□□ 0.38
SDC3-204ENST00000487984 TCP11L2Q8N4U5 519 aa17.45■□□□□ 0.38
SDC3-204ENST00000487984 TTC21AQ8NDW8 1320 aa17.45■□□□□ 0.38
SDC3-204ENST00000487984 BAG6P46379 1132 aa17.44■□□□□ 0.38
SDC3-204ENST00000487984 AKAP12Q02952 1782 aa17.43■□□□□ 0.38
SDC3-204ENST00000487984 THRAP3Q9Y2W1 955 aaKnown RBP17.42■□□□□ 0.38
SDC3-204ENST00000487984 CD163L1Q9NR16 1453 aa17.42■□□□□ 0.38
SDC3-204ENST00000487984 CRB1P82279 1406 aa17.41■□□□□ 0.38
SDC3-204ENST00000487984 SOX12O15370 315 aa17.41■□□□□ 0.38
SDC3-204ENST00000487984 FAM196AQ6ZSG2 479 aa17.41■□□□□ 0.38
SDC3-204ENST00000487984 ARHGEF25Q86VW2 580 aa17.41■□□□□ 0.38
SDC3-204ENST00000487984 KCNH5Q8NCM2 988 aa17.41■□□□□ 0.38
SDC3-204ENST00000487984 AXIN2Q9Y2T1 843 aa17.41■□□□□ 0.38
SDC3-204ENST00000487984 EN1Q05925 392 aaPredicted RBP17.4■□□□□ 0.38
SDC3-204ENST00000487984 PDE3BQ13370 1112 aa17.4■□□□□ 0.38
SDC3-204ENST00000487984 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.4■□□□□ 0.38
SDC3-204ENST00000487984 TMC1Q8TDI8 760 aa17.4■□□□□ 0.38
SDC3-204ENST00000487984 DISP2A7MBM2 1401 aa17.39■□□□□ 0.38
SDC3-204ENST00000487984 SLC12A5Q9H2X9 1139 aa17.39■□□□□ 0.37
SDC3-204ENST00000487984 RGPD1P0DJD0 1748 aa17.38■□□□□ 0.37
SDC3-204ENST00000487984 NFAT5O94916 1531 aa17.38■□□□□ 0.37
SDC3-204ENST00000487984 ST20-MTHFSA0A0A6YYL1 179 aa17.38■□□□□ 0.37
SDC3-204ENST00000487984 TRIM37O94972 964 aa17.38■□□□□ 0.37
SDC3-204ENST00000487984 TESK2Q96S53 571 aa17.38■□□□□ 0.37
SDC3-204ENST00000487984 MON2Q7Z3U7 1717 aa17.38■□□□□ 0.37
SDC3-204ENST00000487984 COL18A1P39060 1754 aa17.38■□□□□ 0.37
SDC3-204ENST00000487984 TOM1L2Q6ZVM7 507 aa17.37■□□□□ 0.37
SDC3-204ENST00000487984 HDGFL2Q7Z4V5 671 aaPredicted RBP17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms