RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 ESF1Q9H501 851 aaKnown RBP11.19□□□□□ -0.62
SMC4-217ENST00000485867 TCOF1Q13428 1488 aaKnown RBP11.19□□□□□ -0.62
SMC4-217ENST00000485867 KIDINS220Q9ULH0 1771 aa11.18□□□□□ -0.62
SMC4-217ENST00000485867 CDC42BPBQ9Y5S2 1711 aa11.18□□□□□ -0.62
SMC4-217ENST00000485867 ITSN2Q9NZM3 1697 aa11.18□□□□□ -0.62
SMC4-217ENST00000485867 RNF40O75150 1001 aa11.18□□□□□ -0.62
SMC4-217ENST00000485867 CEP170BQ9Y4F5 1589 aaPredicted RBP11.17□□□□□ -0.62
SMC4-217ENST00000485867 NUTM2FA1L443 756 aa11.17□□□□□ -0.62
SMC4-217ENST00000485867 APLP1P51693 650 aa11.17□□□□□ -0.62
SMC4-217ENST00000485867 ABCC1P33527 1531 aa11.16□□□□□ -0.62
SMC4-217ENST00000485867 MTRQ99707 1265 aa11.16□□□□□ -0.62
SMC4-217ENST00000485867 SLF2Q8IX21 1173 aa11.15□□□□□ -0.62
SMC4-217ENST00000485867 ADGRG1Q9Y653 693 aa11.15□□□□□ -0.62
SMC4-217ENST00000485867 CLTCQ00610 1675 aaKnown RBP11.14□□□□□ -0.63
SMC4-217ENST00000485867 PREX2Q70Z35 1606 aa11.14□□□□□ -0.63
SMC4-217ENST00000485867 TESPA1A2RU30 521 aaPredicted RBP11.14□□□□□ -0.63
SMC4-217ENST00000485867 NECTIN2Q92692 538 aa11.14□□□□□ -0.63
SMC4-217ENST00000485867 POLR1AO95602 1720 aaPredicted RBP11.14□□□□□ -0.63
SMC4-217ENST00000485867 TROQ12816 1431 aaPredicted RBP11.13□□□□□ -0.63
SMC4-217ENST00000485867 PIP4K2BP78356 416 aa11.13□□□□□ -0.63
SMC4-217ENST00000485867 IL21Q9HBE4 155 aa11.13□□□□□ -0.63
SMC4-217ENST00000485867 CPS1P31327 1500 aa11.13□□□□□ -0.63
SMC4-217ENST00000485867 ZMYM3Q14202 1370 aa11.13□□□□□ -0.63
SMC4-217ENST00000485867 ALKQ9UM73 1620 aa11.13□□□□□ -0.63
SMC4-217ENST00000485867 LRRIQ1Q96JM4 1722 aa11.12□□□□□ -0.63
SMC4-217ENST00000485867 FCHSD2O94868 740 aa11.12□□□□□ -0.63
SMC4-217ENST00000485867 RBM46Q8TBY0 533 aaKnown RBP11.12□□□□□ -0.63
SMC4-217ENST00000485867 TOM1O60784 492 aa11.11□□□□□ -0.63
SMC4-217ENST00000485867 DNAJB2P25686 324 aa11.11□□□□□ -0.63
SMC4-217ENST00000485867 IRX2Q9BZI1 471 aaPredicted RBP11.11□□□□□ -0.63
SMC4-217ENST00000485867 NEURL4Q96JN8 1562 aa11.11□□□□□ -0.63
SMC4-217ENST00000485867 PTPRKQ15262 1439 aa11.1□□□□□ -0.63
SMC4-217ENST00000485867 FAM161AQ3B820 660 aa11.1□□□□□ -0.63
SMC4-217ENST00000485867 ZNF516Q92618 1163 aa11.1□□□□□ -0.63
SMC4-217ENST00000485867 TMEM134Q9H6X4 195 aa11.1□□□□□ -0.63
SMC4-217ENST00000485867 CLIP1P30622 1438 aa11.09□□□□□ -0.63
SMC4-217ENST00000485867 SAMD9LQ8IVG5 1584 aa11.09□□□□□ -0.63
SMC4-217ENST00000485867 HAP1P54257 671 aaPredicted RBP11.09□□□□□ -0.63
SMC4-217ENST00000485867 CDC42BPAQ5VT25 1732 aa11.09□□□□□ -0.63
SMC4-217ENST00000485867 DNMT1P26358 1616 aaKnown RBP11.09□□□□□ -0.63
SMC4-217ENST00000485867 PLXNC1O60486 1568 aa11.08□□□□□ -0.64
SMC4-217ENST00000485867 SHANK2Q9UPX8 1470 aa11.08□□□□□ -0.64
SMC4-217ENST00000485867 SLC4A3P48751 1232 aa11.08□□□□□ -0.64
SMC4-217ENST00000485867 RBM26Q5T8P6 1007 aaKnown RBP11.08□□□□□ -0.64
SMC4-217ENST00000485867 CDK11AQ9UQ88 783 aaPredicted RBP11.08□□□□□ -0.64
SMC4-217ENST00000485867 FMN1Q68DA7 1419 aa11.08□□□□□ -0.64
SMC4-217ENST00000485867 A2ML1A8K2U0 1454 aa11.07□□□□□ -0.64
SMC4-217ENST00000485867 RCCD1A6NED2 376 aa11.07□□□□□ -0.64
SMC4-217ENST00000485867 KDM2AQ9Y2K7 1162 aa11.07□□□□□ -0.64
SMC4-217ENST00000485867 VWDEQ8N2E2 1590 aa11.07□□□□□ -0.64
SMC4-217ENST00000485867 ATP1B4Q9UN42 357 aaPredicted RBP11.06□□□□□ -0.64
SMC4-217ENST00000485867 EEA1Q15075 1411 aa11.06□□□□□ -0.64
SMC4-217ENST00000485867 HIC1Q14526 733 aa11.05□□□□□ -0.64
SMC4-217ENST00000485867 SMYD5Q6GMV2 418 aa11.05□□□□□ -0.64
SMC4-217ENST00000485867 INO80Q9ULG1 1556 aaPredicted RBP11.04□□□□□ -0.64
SMC4-217ENST00000485867 COPS2P61201 443 aa11.04□□□□□ -0.64
SMC4-217ENST00000485867 PPP1R18Q6NYC8 613 aa11.04□□□□□ -0.64
SMC4-217ENST00000485867 PRR14Q9BWN1 585 aa11.04□□□□□ -0.64
SMC4-217ENST00000485867 ATP7AQ04656 1500 aa11.04□□□□□ -0.64
SMC4-217ENST00000485867 SYCP2Q9BX26 1530 aa11.04□□□□□ -0.64
SMC4-217ENST00000485867 GPR37O15354 613 aa11.03□□□□□ -0.64
SMC4-217ENST00000485867 NKX2-3Q8TAU0 364 aa11.03□□□□□ -0.64
SMC4-217ENST00000485867 PXYLP1Q8TE99 480 aa11.03□□□□□ -0.64
SMC4-217ENST00000485867 STRCP1A6NGW2 1772 aa11.03□□□□□ -0.64
SMC4-217ENST00000485867 RNF17Q9BXT8 1623 aaKnown RBP11.02□□□□□ -0.64
SMC4-217ENST00000485867 A2MP01023 1474 aa11.02□□□□□ -0.65
SMC4-217ENST00000485867 ARHGAP35Q9NRY4 1499 aa11.02□□□□□ -0.65
SMC4-217ENST00000485867 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.02□□□□□ -0.65
SMC4-217ENST00000485867 RGS17Q9UGC6 210 aaPredicted RBP11.02□□□□□ -0.65
SMC4-217ENST00000485867 OATP04181 439 aa11.01□□□□□ -0.65
SMC4-217ENST00000485867 PCDHB3Q9Y5E6 796 aa11.01□□□□□ -0.65
SMC4-217ENST00000485867 SYNMO15061 1565 aa11□□□□□ -0.65
SMC4-217ENST00000485867 DEPDC5O75140 1603 aa11□□□□□ -0.65
SMC4-217ENST00000485867 ZPR1O75312 459 aa11□□□□□ -0.65
SMC4-217ENST00000485867 FECHP22830 423 aa11□□□□□ -0.65
SMC4-217ENST00000485867 METTL3Q86U44 580 aaKnown RBP11□□□□□ -0.65
SMC4-217ENST00000485867 ADGBQ8N7X0 1667 aa11□□□□□ -0.65
SMC4-217ENST00000485867 SPAG9O60271 1321 aaKnown RBP11□□□□□ -0.65
SMC4-217ENST00000485867 GNPATO15228 680 aa10.99□□□□□ -0.65
SMC4-217ENST00000485867 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.99□□□□□ -0.65
SMC4-217ENST00000485867 IQGAP1P46940 1657 aa10.98□□□□□ -0.65
SMC4-217ENST00000485867 SETD1AO15047 1707 aaKnown RBP10.98□□□□□ -0.65
SMC4-217ENST00000485867 SLC10A3P09131 477 aa10.98□□□□□ -0.65
SMC4-217ENST00000485867 BLOC1S3Q6QNY0 202 aa10.98□□□□□ -0.65
SMC4-217ENST00000485867 MED14O60244 1454 aa10.98□□□□□ -0.65
SMC4-217ENST00000485867 LRRC7Q96NW7 1537 aa10.98□□□□□ -0.65
SMC4-217ENST00000485867 ACTN4O43707 911 aaKnown RBP10.97□□□□□ -0.65
SMC4-217ENST00000485867 CFHP08603 1231 aa10.97□□□□□ -0.65
SMC4-217ENST00000485867 GGT6Q6P531 493 aa10.97□□□□□ -0.65
SMC4-217ENST00000485867 PRKD2Q9BZL6 878 aa10.97□□□□□ -0.65
SMC4-217ENST00000485867 TNRQ92752 1358 aa10.97□□□□□ -0.65
SMC4-217ENST00000485867 NPHP4O75161 1426 aaPredicted RBP10.97□□□□□ -0.65
SMC4-217ENST00000485867 CCDC18Q5T9S5 1454 aa10.96□□□□□ -0.65
SMC4-217ENST00000485867 KMT5BQ4FZB7 885 aa10.96□□□□□ -0.65
SMC4-217ENST00000485867 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.95□□□□□ -0.663e-6■□□□□ 10.4
SMC4-217ENST00000485867 XIRP1Q702N8 1843 aaKnown RBP10.95□□□□□ -0.66
SMC4-217ENST00000485867 PZPP20742 1482 aa10.94□□□□□ -0.66
SMC4-217ENST00000485867 KIAA1107Q9UPP5 1409 aa10.94□□□□□ -0.66
SMC4-217ENST00000485867 HNRNPMP52272 730 aaKnown RBP eCLIP10.94□□□□□ -0.662e-9■□□□□ 8.7
SMC4-217ENST00000485867 POTEAQ6S8J7 498 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms