RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 ZNF511Q8NB15 262 aa8.34□□□□□ -1.07
VPS50-217ENST00000485140 LIMD1Q9UGP4 676 aa8.34□□□□□ -1.07
VPS50-217ENST00000485140 FAM174AQ8TBP5 190 aa8.33□□□□□ -1.08
VPS50-217ENST00000485140 F12P00748 615 aaPredicted RBP8.32□□□□□ -1.08
VPS50-217ENST00000485140 SKOR1P84550 965 aa8.32□□□□□ -1.08
VPS50-217ENST00000485140 CSPP1Q1MSJ5 1256 aa8.32□□□□□ -1.08
VPS50-217ENST00000485140 BPHLQ86WA6 291 aaPredicted RBP8.32□□□□□ -1.08
VPS50-217ENST00000485140 WASF2Q9Y6W5 498 aa8.32□□□□□ -1.08
VPS50-217ENST00000485140 ZC3H4Q9UPT8 1303 aaKnown RBP8.31□□□□□ -1.08
VPS50-217ENST00000485140 SMPD1P17405 629 aa8.31□□□□□ -1.08
VPS50-217ENST00000485140 SH3BP2P78314 561 aa8.31□□□□□ -1.08
VPS50-217ENST00000485140 PTCRAQ6ISU1 281 aaPredicted RBP8.31□□□□□ -1.08
VPS50-217ENST00000485140 CABLES1Q8TDN4 633 aa8.31□□□□□ -1.08
VPS50-217ENST00000485140 TSC1Q92574 1164 aa8.31□□□□□ -1.08
VPS50-217ENST00000485140 SENP2Q9HC62 589 aa8.31□□□□□ -1.08
VPS50-217ENST00000485140 AAASQ9NRG9 546 aa8.31□□□□□ -1.08
VPS50-217ENST00000485140 ALDH1A1P00352 501 aa8.3□□□□□ -1.08
VPS50-217ENST00000485140 PPP2R2DQ66LE6 453 aa8.3□□□□□ -1.08
VPS50-217ENST00000485140 TRIM52Q96A61 297 aa8.3□□□□□ -1.08
VPS50-217ENST00000485140 KIFC2Q96AC6 838 aa8.3□□□□□ -1.08
VPS50-217ENST00000485140 ATP1B4Q9UN42 357 aaPredicted RBP8.3□□□□□ -1.08
VPS50-217ENST00000485140 QPCTQ16769 361 aa8.29□□□□□ -1.08
VPS50-217ENST00000485140 BAP1Q92560 729 aa8.29□□□□□ -1.08
VPS50-217ENST00000485140 POLR3EQ9NVU0 708 aa8.29□□□□□ -1.08
VPS50-217ENST00000485140 SIAH2O43255 324 aa8.28□□□□□ -1.08
VPS50-217ENST00000485140 PCMTD1Q96MG8 357 aaPredicted RBP8.27□□□□□ -1.09
VPS50-217ENST00000485140 GPBP1L1Q9HC44 474 aaPredicted RBP8.27□□□□□ -1.09
VPS50-217ENST00000485140 CDV3Q9UKY7 258 aaKnown RBP8.27□□□□□ -1.09
VPS50-217ENST00000485140 AGERQ15109 404 aa8.26□□□□□ -1.09
VPS50-217ENST00000485140 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.26□□□□□ -1.09
VPS50-217ENST00000485140 FAM117AQ9C073 453 aa8.26□□□□□ -1.09
VPS50-217ENST00000485140 POTECB2RU33 542 aa8.25□□□□□ -1.09
VPS50-217ENST00000485140 J3QL48 77 aa8.25□□□□□ -1.09
VPS50-217ENST00000485140 NEUROD2Q15784 382 aa8.25□□□□□ -1.09
VPS50-217ENST00000485140 LINC01559Q495D7 138 aa8.25□□□□□ -1.09
VPS50-217ENST00000485140 MAP10Q9P2G4 905 aa8.25□□□□□ -1.09
VPS50-217ENST00000485140 GPSM3Q9Y4H4 160 aa8.25□□□□□ -1.09
VPS50-217ENST00000485140 NR5A1Q13285 461 aa8.24□□□□□ -1.09
VPS50-217ENST00000485140 TMEM259Q4ZIN3 620 aa8.24□□□□□ -1.09
VPS50-217ENST00000485140 RTL5Q5HYW3 569 aaPredicted RBP8.24□□□□□ -1.09
VPS50-217ENST00000485140 CDK15Q96Q40 435 aa8.24□□□□□ -1.09
VPS50-217ENST00000485140 MAP4K5Q9Y4K4 846 aa8.24□□□□□ -1.09
VPS50-217ENST00000485140 APBB1O00213 710 aa8.23□□□□□ -1.09
VPS50-217ENST00000485140 ST8SIA5O15466 376 aa8.23□□□□□ -1.09
VPS50-217ENST00000485140 PDXDC2PQ6P474 469 aa8.23□□□□□ -1.09
VPS50-217ENST00000485140 ADH1CP00326 375 aa8.22□□□□□ -1.09
VPS50-217ENST00000485140 TRMT44Q8IYL2 757 aaKnown RBP8.22□□□□□ -1.09
VPS50-217ENST00000485140 ZNF592Q92610 1267 aa8.22□□□□□ -1.09
VPS50-217ENST00000485140 C11orf95C9JLR9 678 aaPredicted RBP8.21□□□□□ -1.1
VPS50-217ENST00000485140 PER1O15534 1290 aaPredicted RBP8.21□□□□□ -1.1
VPS50-217ENST00000485140 HPS1Q92902 700 aa8.21□□□□□ -1.1
VPS50-217ENST00000485140 ATP13A2Q9NQ11 1180 aa8.21□□□□□ -1.1
VPS50-217ENST00000485140 FKBPLQ9UIM3 349 aa8.21□□□□□ -1.1
VPS50-217ENST00000485140 CAPN5O15484 640 aaPredicted RBP8.2□□□□□ -1.1
VPS50-217ENST00000485140 C1QTNF2Q9BXJ5 285 aa8.2□□□□□ -1.1
VPS50-217ENST00000485140 SOCS7O14512 581 aa8.19□□□□□ -1.1
VPS50-217ENST00000485140 PTK2Q05397 1052 aa8.19□□□□□ -1.1
VPS50-217ENST00000485140 SH3BP5LQ7L8J4 393 aa8.19□□□□□ -1.1
VPS50-217ENST00000485140 TRIM47Q96LD4 638 aa8.19□□□□□ -1.1
VPS50-217ENST00000485140 AP1G2O75843 785 aa8.18□□□□□ -1.1
VPS50-217ENST00000485140 CTDSPL2Q05D32 466 aa8.18□□□□□ -1.1
VPS50-217ENST00000485140 NNTQ13423 1086 aa8.18□□□□□ -1.1
VPS50-217ENST00000485140 SCARF1Q14162 830 aa8.18□□□□□ -1.1
VPS50-217ENST00000485140 SH3RF1Q7Z6J0 888 aa8.18□□□□□ -1.1
VPS50-217ENST00000485140 LCE2AQ5TA79 106 aaPredicted RBP8.17□□□□□ -1.1
VPS50-217ENST00000485140 CCDC125Q86Z20 511 aa8.17□□□□□ -1.1
VPS50-217ENST00000485140 FOXJ1Q92949 421 aa8.17□□□□□ -1.1
VPS50-217ENST00000485140 ARHGAP9Q9BRR9 750 aa8.17□□□□□ -1.1
VPS50-217ENST00000485140 TLL2Q9Y6L7 1015 aa8.17□□□□□ -1.1
VPS50-217ENST00000485140 UPP2O95045 317 aa8.16□□□□□ -1.1
VPS50-217ENST00000485140 DHX9Q08211 1270 aaKnown RBP8.16□□□□□ -1.1
VPS50-217ENST00000485140 ZBTB33Q86T24 672 aa8.16□□□□□ -1.1
VPS50-217ENST00000485140 PROCA1Q8NCQ7 364 aaPredicted RBP8.16□□□□□ -1.1
VPS50-217ENST00000485140 SLC10A4Q96EP9 437 aa8.16□□□□□ -1.1
VPS50-217ENST00000485140 GMPR2Q9P2T1 348 aaKnown RBP8.16□□□□□ -1.1
VPS50-217ENST00000485140 EMILIN1Q9Y6C2 1016 aa8.16□□□□□ -1.1
VPS50-217ENST00000485140 USP17L8P0C7I0 530 aa8.15□□□□□ -1.1
VPS50-217ENST00000485140 RFC5P40937 340 aa8.15□□□□□ -1.1
VPS50-217ENST00000485140 ARID5BQ14865 1188 aa8.15□□□□□ -1.1
VPS50-217ENST00000485140 VASH1Q7L8A9 365 aaPredicted RBP8.15□□□□□ -1.1
VPS50-217ENST00000485140 BANK1Q8NDB2 785 aa8.15□□□□□ -1.1
VPS50-217ENST00000485140 BRPF1P55201 1214 aaPredicted RBP8.14□□□□□ -1.11
VPS50-217ENST00000485140 WDR4P57081 412 aaKnown RBP8.14□□□□□ -1.11
VPS50-217ENST00000485140 NBPF20Q3BBV1 942 aa8.14□□□□□ -1.11
VPS50-217ENST00000485140 TPRNQ4KMQ1 711 aa8.14□□□□□ -1.11
VPS50-217ENST00000485140 NPAS3Q8IXF0 933 aa8.14□□□□□ -1.11
VPS50-217ENST00000485140 PGPEP1Q9NXJ5 209 aa8.14□□□□□ -1.11
VPS50-217ENST00000485140 MAGEB6P1A0A0J9YX57 407 aa8.13□□□□□ -1.11
VPS50-217ENST00000485140 MCCD1P59942 119 aaPredicted RBP8.13□□□□□ -1.11
VPS50-217ENST00000485140 LRRN4Q8WUT4 740 aa8.12□□□□□ -1.11
VPS50-217ENST00000485140 PRM3Q9NNZ6 103 aa8.12□□□□□ -1.11
VPS50-217ENST00000485140 ZNF330Q9Y3S2 320 aaPredicted RBP8.12□□□□□ -1.11
VPS50-217ENST00000485140 TIMP2P16035 220 aa8.11□□□□□ -1.11
VPS50-217ENST00000485140 NR6A1Q15406 480 aa8.11□□□□□ -1.11
VPS50-217ENST00000485140 ERFEQ4G0M1 354 aa8.11□□□□□ -1.11
VPS50-217ENST00000485140 CCDC116Q8IYX3 515 aa8.11□□□□□ -1.11
VPS50-217ENST00000485140 IL27Q8NEV9 243 aa8.11□□□□□ -1.11
VPS50-217ENST00000485140 FSHRP23945 695 aa8.1□□□□□ -1.11
VPS50-217ENST00000485140 GRM5P41594 1212 aa8.1□□□□□ -1.11
VPS50-217ENST00000485140 C4orf48Q5BLP8 95 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms