RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 HS3ST6Q96QI5 342 aa9.22□□□□□ -0.93
PTCD3-215ENST00000484203 EMILIN3Q9NT22 766 aa9.22□□□□□ -0.93
PTCD3-215ENST00000484203 TBC1D12O60347 775 aa9.21□□□□□ -0.94
PTCD3-215ENST00000484203 MAP3K9P80192 1104 aa9.21□□□□□ -0.94
PTCD3-215ENST00000484203 KCNV2Q8TDN2 545 aa9.21□□□□□ -0.94
PTCD3-215ENST00000484203 PTCD2Q8WV60 388 aaKnown RBP9.21□□□□□ -0.94
PTCD3-215ENST00000484203 TBX22Q9Y458 520 aa9.21□□□□□ -0.94
PTCD3-215ENST00000484203 PLEKHG1Q9ULL1 1385 aa9.21□□□□□ -0.94
PTCD3-215ENST00000484203 PIP4K2BP78356 416 aa9.2□□□□□ -0.94
PTCD3-215ENST00000484203 OXER1Q8TDS5 423 aa9.2□□□□□ -0.94
PTCD3-215ENST00000484203 HFM1A2PYH4 1435 aa9.2□□□□□ -0.94
PTCD3-215ENST00000484203 KDM5AP29375 1690 aaKnown RBP9.2□□□□□ -0.94
PTCD3-215ENST00000484203 SLC26A8Q96RN1 970 aa9.19□□□□□ -0.94
PTCD3-215ENST00000484203 PCDHGA4Q9Y5G9 962 aa9.19□□□□□ -0.94
PTCD3-215ENST00000484203 RIMS2Q9UQ26 1411 aa9.19□□□□□ -0.94
PTCD3-215ENST00000484203 ADGRB3O60242 1522 aa9.19□□□□□ -0.94
PTCD3-215ENST00000484203 DPYSL4O14531 572 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 UNC13BO14795 1591 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 TET3O43151 1660 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 CEP152O94986 1710 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 ERBB3P21860 1342 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 IQGAP1P46940 1657 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 NAIPQ13075 1403 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 ARSIQ5FYB1 569 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 PROSER2Q86WR7 435 aaPredicted RBP9.18□□□□□ -0.94
PTCD3-215ENST00000484203 TRIM52Q96A61 297 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 LRRC7Q96NW7 1537 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 PIK3R4Q99570 1358 aa9.18□□□□□ -0.94
PTCD3-215ENST00000484203 POLR1AO95602 1720 aaPredicted RBP9.17□□□□□ -0.94
PTCD3-215ENST00000484203 UBR1Q8IWV7 1749 aa9.17□□□□□ -0.94
PTCD3-215ENST00000484203 SYNMO15061 1565 aa9.17□□□□□ -0.94
PTCD3-215ENST00000484203 ZFYVE9O95405 1425 aa9.17□□□□□ -0.94
PTCD3-215ENST00000484203 NCOA3Q9Y6Q9 1424 aa9.17□□□□□ -0.94
PTCD3-215ENST00000484203 DISP3Q9P2K9 1392 aa9.17□□□□□ -0.94
PTCD3-215ENST00000484203 TMEM94Q12767 1356 aa9.16□□□□□ -0.94
PTCD3-215ENST00000484203 RPGRIP1LQ68CZ1 1315 aa9.16□□□□□ -0.94
PTCD3-215ENST00000484203 ZNF326Q5BKZ1 582 aaKnown RBP9.16□□□□□ -0.94
PTCD3-215ENST00000484203 GPR153Q6NV75 609 aa9.16□□□□□ -0.94
PTCD3-215ENST00000484203 ARHGEF1Q92888 912 aaKnown RBP9.16□□□□□ -0.94
PTCD3-215ENST00000484203 KHSRPQ92945 711 aaKnown RBP eCLIP9.16□□□□□ -0.942e-7■■□□□ 13.6
PTCD3-215ENST00000484203 PIK3C2BO00750 1634 aa9.16□□□□□ -0.94
PTCD3-215ENST00000484203 NKTRP30414 1462 aaKnown RBP9.15□□□□□ -0.94
PTCD3-215ENST00000484203 POTEB3A0JP26 581 aa9.15□□□□□ -0.94
PTCD3-215ENST00000484203 HSPA1LP34931 641 aa9.15□□□□□ -0.94
PTCD3-215ENST00000484203 POTEBQ6S5H4 581 aa9.15□□□□□ -0.94
PTCD3-215ENST00000484203 SPNS2Q8IVW8 549 aa9.15□□□□□ -0.94
PTCD3-215ENST00000484203 IQGAP3Q86VI3 1631 aa9.15□□□□□ -0.94
PTCD3-215ENST00000484203 MSH6P52701 1360 aa9.14□□□□□ -0.95
PTCD3-215ENST00000484203 NUDT7P0C024 238 aa9.14□□□□□ -0.95
PTCD3-215ENST00000484203 ARIH1Q9Y4X5 557 aaPredicted RBP9.14□□□□□ -0.95
PTCD3-215ENST00000484203 FAM135BQ49AJ0 1406 aa9.14□□□□□ -0.95
PTCD3-215ENST00000484203 C14orf37Q86TY3 774 aa9.13□□□□□ -0.95
PTCD3-215ENST00000484203 C19orf44Q9H6X5 657 aa9.13□□□□□ -0.95
PTCD3-215ENST00000484203 ZNF316A6NFI3 1004 aaPredicted RBP9.12□□□□□ -0.95
PTCD3-215ENST00000484203 EVI5O60447 810 aa9.12□□□□□ -0.95
PTCD3-215ENST00000484203 SLAIN2Q9P270 581 aa9.12□□□□□ -0.95
PTCD3-215ENST00000484203 GCC2Q8IWJ2 1684 aa9.11□□□□□ -0.95
PTCD3-215ENST00000484203 ATF3P18847 181 aa9.11□□□□□ -0.95
PTCD3-215ENST00000484203 MMRN1Q13201 1228 aa9.11□□□□□ -0.95
PTCD3-215ENST00000484203 KRTAP3-3Q9BYR6 98 aa9.11□□□□□ -0.95
PTCD3-215ENST00000484203 KRTAP3-2Q9BYR7 98 aa9.11□□□□□ -0.95
PTCD3-215ENST00000484203 AMOTL2Q9Y2J4 779 aa9.11□□□□□ -0.95
PTCD3-215ENST00000484203 TMEM131LA2VDJ0 1609 aa9.1□□□□□ -0.95
PTCD3-215ENST00000484203 SPDYE16A6NNV3 312 aaPredicted RBP9.1□□□□□ -0.95
PTCD3-215ENST00000484203 VARS2Q5ST30 1063 aaKnown RBP9.1□□□□□ -0.95
PTCD3-215ENST00000484203 NUTM2DQ5VT03 806 aaPredicted RBP9.1□□□□□ -0.95
PTCD3-215ENST00000484203 ADAMTS13Q76LX8 1427 aa9.1□□□□□ -0.95
PTCD3-215ENST00000484203 DIP2AQ14689 1571 aa9.1□□□□□ -0.95
PTCD3-215ENST00000484203 HRCP23327 699 aa9.09□□□□□ -0.95
PTCD3-215ENST00000484203 MPHOSPH9Q99550 1183 aa9.09□□□□□ -0.95
PTCD3-215ENST00000484203 TRPM2O94759 1503 aa9.09□□□□□ -0.95
PTCD3-215ENST00000484203 CCDC144AA2RUR9 1427 aa9.08□□□□□ -0.96
PTCD3-215ENST00000484203 PDIA6Q15084 440 aa9.08□□□□□ -0.96
PTCD3-215ENST00000484203 CFAP65Q6ZU64 1925 aaKnown RBP9.07□□□□□ -0.96
PTCD3-215ENST00000484203 E9PCH4 1651 aa9.07□□□□□ -0.96
PTCD3-215ENST00000484203 SETD5Q9C0A6 1442 aa9.07□□□□□ -0.96
PTCD3-215ENST00000484203 ANO8Q9HCE9 1232 aaPredicted RBP9.07□□□□□ -0.96
PTCD3-215ENST00000484203 ANKRD30BQ9BXX2 1392 aa9.07□□□□□ -0.96
PTCD3-215ENST00000484203 NWD1Q149M9 1564 aa9.07□□□□□ -0.96
PTCD3-215ENST00000484203 DCCP43146 1447 aa9.06□□□□□ -0.96
PTCD3-215ENST00000484203 SOCS7O14512 581 aa9.06□□□□□ -0.96
PTCD3-215ENST00000484203 LHX6Q9UPM6 363 aa9.06□□□□□ -0.96
PTCD3-215ENST00000484203 NBR1Q14596 966 aa9.05□□□□□ -0.96
PTCD3-215ENST00000484203 ZNF687Q8N1G0 1237 aa9.05□□□□□ -0.96
PTCD3-215ENST00000484203 RBM33Q96EV2 1170 aaKnown RBP9.05□□□□□ -0.96
PTCD3-215ENST00000484203 STAC3Q96MF2 364 aa9.05□□□□□ -0.96
PTCD3-215ENST00000484203 SETBP1Q9Y6X0 1596 aa9.04□□□□□ -0.96
PTCD3-215ENST00000484203 METP08581 1390 aa9.04□□□□□ -0.96
PTCD3-215ENST00000484203 SEMA3EO15041 775 aa9.04□□□□□ -0.96
PTCD3-215ENST00000484203 DDX12PQ92771 950 aa9.04□□□□□ -0.96
PTCD3-215ENST00000484203 JCADQ9P266 1359 aa9.03□□□□□ -0.96
PTCD3-215ENST00000484203 ALKQ9UM73 1620 aa9.02□□□□□ -0.96
PTCD3-215ENST00000484203 GRXCR2A6NFK2 248 aa9.02□□□□□ -0.97
PTCD3-215ENST00000484203 PTGER2P43116 358 aa9.02□□□□□ -0.97
PTCD3-215ENST00000484203 RGL3Q3MIN7 710 aa9.02□□□□□ -0.97
PTCD3-215ENST00000484203 ILDR2Q71H61 639 aa9.02□□□□□ -0.97
PTCD3-215ENST00000484203 PTCH1Q13635 1447 aa9.02□□□□□ -0.97
PTCD3-215ENST00000484203 SPATA31A6Q5VVP1 1343 aa9.02□□□□□ -0.97
PTCD3-215ENST00000484203 SPHKAPQ2M3C7 1700 aa9.01□□□□□ -0.97
PTCD3-215ENST00000484203 PRAG1Q86YV5 1406 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms