RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 ZC3H4Q9UPT8 1303 aaKnown RBP13.99□□□□□ -0.17
MCF2-207ENST00000483690 TLL1O43897 1013 aa13.99□□□□□ -0.17
MCF2-207ENST00000483690 ALG2Q9H553 416 aa13.99□□□□□ -0.17
MCF2-207ENST00000483690 PRDM9Q9NQV7 894 aa13.99□□□□□ -0.17
MCF2-207ENST00000483690 EIF4G2P78344 907 aaKnown RBP eCLIP13.98□□□□□ -0.17
MCF2-207ENST00000483690 SEMA3FQ13275 785 aa13.98□□□□□ -0.17
MCF2-207ENST00000483690 EVA1BQ9NVM1 165 aa13.98□□□□□ -0.17
MCF2-207ENST00000483690 NR1H3Q13133 447 aa13.97□□□□□ -0.17
MCF2-207ENST00000483690 ZBBXA8MT70 800 aa13.96□□□□□ -0.17
MCF2-207ENST00000483690 IL21Q9HBE4 155 aa13.96□□□□□ -0.17
MCF2-207ENST00000483690 KCNH2Q12809 1159 aa13.95□□□□□ -0.18
MCF2-207ENST00000483690 ARMC2Q8NEN0 867 aa13.95□□□□□ -0.18
MCF2-207ENST00000483690 FBXO45P0C2W1 286 aa13.94□□□□□ -0.18
MCF2-207ENST00000483690 PPP1R15AO75807 674 aaPredicted RBP13.93□□□□□ -0.18
MCF2-207ENST00000483690 PDIA4P13667 645 aaKnown RBP13.93□□□□□ -0.18
MCF2-207ENST00000483690 TJAP1Q5JTD0 557 aa13.93□□□□□ -0.18
MCF2-207ENST00000483690 PPP1R12CQ9BZL4 782 aa13.92□□□□□ -0.18
MCF2-207ENST00000483690 SLC6A16Q9GZN6 736 aa13.92□□□□□ -0.18
MCF2-207ENST00000483690 ZNF516Q92618 1163 aa13.91□□□□□ -0.18
MCF2-207ENST00000483690 GPKOWQ92917 476 aaPredicted RBP eCLIP13.91□□□□□ -0.18
MCF2-207ENST00000483690 MYT1LQ9UL68 1186 aa13.91□□□□□ -0.18
MCF2-207ENST00000483690 NBPF14Q5TI25 921 aa13.9□□□□□ -0.18
MCF2-207ENST00000483690 CCDC24Q8N4L8 307 aa13.9□□□□□ -0.18
MCF2-207ENST00000483690 RFX1P22670 979 aa13.88□□□□□ -0.19
MCF2-207ENST00000483690 PTK2Q05397 1052 aa13.88□□□□□ -0.19
MCF2-207ENST00000483690 CFAP70Q5T0N1 1121 aa13.88□□□□□ -0.19
MCF2-207ENST00000483690 PDXDC2PQ6P474 469 aa13.88□□□□□ -0.19
MCF2-207ENST00000483690 GPSM3Q9Y4H4 160 aa13.88□□□□□ -0.19
MCF2-207ENST00000483690 ACIN1Q9UKV3 1341 aaKnown RBP13.88□□□□□ -0.19
MCF2-207ENST00000483690 PALM3A6NDB9 673 aaPredicted RBP13.87□□□□□ -0.19
MCF2-207ENST00000483690 PBXIP1Q96AQ6 731 aa13.87□□□□□ -0.19
MCF2-207ENST00000483690 UCN2Q96RP3 112 aa13.87□□□□□ -0.19
MCF2-207ENST00000483690 ZNF592Q92610 1267 aa13.85□□□□□ -0.19
MCF2-207ENST00000483690 UNC93B1Q9H1C4 597 aa13.85□□□□□ -0.19
MCF2-207ENST00000483690 TFIP11Q9UBB9 837 aaKnown RBP13.85□□□□□ -0.19
MCF2-207ENST00000483690 LMOD1P29536 600 aaPredicted RBP13.83□□□□□ -0.2
MCF2-207ENST00000483690 RETREG2Q8NC44 543 aa13.83□□□□□ -0.2
MCF2-207ENST00000483690 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.82□□□□□ -0.2
MCF2-207ENST00000483690 S1PR4O95977 384 aa13.82□□□□□ -0.2
MCF2-207ENST00000483690 NKX2-3Q8TAU0 364 aa13.82□□□□□ -0.2
MCF2-207ENST00000483690 PTCRAQ6ISU1 281 aaPredicted RBP13.81□□□□□ -0.2
MCF2-207ENST00000483690 ARHGAP9Q9BRR9 750 aa13.81□□□□□ -0.2
MCF2-207ENST00000483690 TBC1D9Q6ZT07 1266 aa13.8□□□□□ -0.2
MCF2-207ENST00000483690 ATP9BO43861 1147 aa13.79□□□□□ -0.2
MCF2-207ENST00000483690 MCCD1P59942 119 aaPredicted RBP13.79□□□□□ -0.2
MCF2-207ENST00000483690 FCF1Q9Y324 198 aaKnown RBP13.79□□□□□ -0.2
MCF2-207ENST00000483690 PCDHB9Q9Y5E1 797 aa13.79□□□□□ -0.2
MCF2-207ENST00000483690 MAFBQ9Y5Q3 323 aaPredicted RBP13.79□□□□□ -0.2
MCF2-207ENST00000483690 OCSTAMPQ9BR26 566 aa13.78□□□□□ -0.2
MCF2-207ENST00000483690 TRAIPQ9BWF2 469 aa13.78□□□□□ -0.2
MCF2-207ENST00000483690 HCSTQ9UBK5 93 aa13.78□□□□□ -0.2
MCF2-207ENST00000483690 ZBTB33Q86T24 672 aa13.77□□□□□ -0.21
MCF2-207ENST00000483690 SRPK2P78362 688 aaKnown RBP13.76□□□□□ -0.21
MCF2-207ENST00000483690 PDE4CQ08493 712 aa13.76□□□□□ -0.21
MCF2-207ENST00000483690 SH3BP5LQ7L8J4 393 aa13.76□□□□□ -0.21
MCF2-207ENST00000483690 NFATC2IPQ8NCF5 419 aa13.76□□□□□ -0.21
MCF2-207ENST00000483690 ADAM32Q8TC27 787 aa13.76□□□□□ -0.21
MCF2-207ENST00000483690 TRIM26Q12899 539 aaPredicted RBP13.75□□□□□ -0.21
MCF2-207ENST00000483690 PIK3CDO00329 1044 aa13.74□□□□□ -0.21
MCF2-207ENST00000483690 KCNC4Q03721 635 aa13.74□□□□□ -0.21
MCF2-207ENST00000483690 SLFNL1Q499Z3 407 aa13.74□□□□□ -0.21
MCF2-207ENST00000483690 BAP1Q92560 729 aa13.74□□□□□ -0.21
MCF2-207ENST00000483690 RNF166Q96A37 237 aaPredicted RBP13.74□□□□□ -0.21
MCF2-207ENST00000483690 CEP126Q9P2H0 1117 aa13.74□□□□□ -0.21
MCF2-207ENST00000483690 MAGEB6P1A0A0J9YX57 407 aa13.72□□□□□ -0.21
MCF2-207ENST00000483690 CSB-PGBD3P0DP91 1061 aa13.72□□□□□ -0.21
MCF2-207ENST00000483690 SKIP12755 728 aa13.72□□□□□ -0.21
MCF2-207ENST00000483690 AGERQ15109 404 aa13.72□□□□□ -0.21
MCF2-207ENST00000483690 BPHLQ86WA6 291 aaPredicted RBP13.72□□□□□ -0.21
MCF2-207ENST00000483690 CARD14Q9BXL6 1004 aa13.72□□□□□ -0.21
MCF2-207ENST00000483690 LINC01559Q495D7 138 aa13.71□□□□□ -0.21
MCF2-207ENST00000483690 ITGBL1O95965 494 aaPredicted RBP13.7□□□□□ -0.22
MCF2-207ENST00000483690 CDCA8Q53HL2 280 aa13.7□□□□□ -0.22
MCF2-207ENST00000483690 SH3RF1Q7Z6J0 888 aa13.7□□□□□ -0.22
MCF2-207ENST00000483690 DZIP3Q86Y13 1208 aaKnown RBP13.7□□□□□ -0.22
MCF2-207ENST00000483690 ZNF511Q8NB15 262 aa13.7□□□□□ -0.22
MCF2-207ENST00000483690 ZBTB7CA1YPR0 619 aa13.69□□□□□ -0.22
MCF2-207ENST00000483690 RNF135Q8IUD6 432 aa13.69□□□□□ -0.22
MCF2-207ENST00000483690 FAM174AQ8TBP5 190 aa13.69□□□□□ -0.22
MCF2-207ENST00000483690 VRTNQ9H8Y1 702 aa13.69□□□□□ -0.22
MCF2-207ENST00000483690 PODXL2Q9NZ53 605 aa13.69□□□□□ -0.22
MCF2-207ENST00000483690 USP17L3A6NCW0 530 aa13.68□□□□□ -0.22
MCF2-207ENST00000483690 USP17L4A6NCW7 530 aa13.68□□□□□ -0.22
MCF2-207ENST00000483690 USP17L5A8MUK1 530 aa13.68□□□□□ -0.22
MCF2-207ENST00000483690 GGCXP38435 758 aa13.68□□□□□ -0.22
MCF2-207ENST00000483690 USP17L2Q6R6M4 530 aa13.68□□□□□ -0.22
MCF2-207ENST00000483690 USP17L1Q7RTZ2 530 aa13.68□□□□□ -0.22
MCF2-207ENST00000483690 PPEF1O14829 653 aaPredicted RBP13.67□□□□□ -0.22
MCF2-207ENST00000483690 ZBTB24O43167 697 aaPredicted RBP13.67□□□□□ -0.22
MCF2-207ENST00000483690 ATG7O95352 703 aa13.67□□□□□ -0.22
MCF2-207ENST00000483690 PLEKHM2Q8IWE5 1019 aa13.67□□□□□ -0.22
MCF2-207ENST00000483690 KCTD17Q8N5Z5 321 aa13.67□□□□□ -0.22
MCF2-207ENST00000483690 FOXJ1Q92949 421 aa13.67□□□□□ -0.22
MCF2-207ENST00000483690 USTQ9Y2C2 406 aa13.67□□□□□ -0.22
MCF2-207ENST00000483690 PHTF2Q8N3S3 785 aa13.65□□□□□ -0.22
MCF2-207ENST00000483690 RNF223E7ERA6 249 aa13.64□□□□□ -0.23
MCF2-207ENST00000483690 ERFEQ4G0M1 354 aa13.64□□□□□ -0.23
MCF2-207ENST00000483690 KANK4Q5T7N3 995 aaPredicted RBP13.64□□□□□ -0.23
MCF2-207ENST00000483690 DEPDC4Q8N2C3 294 aa13.64□□□□□ -0.23
MCF2-207ENST00000483690 SLC10A4Q96EP9 437 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms