RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 AMER1Q5JTC6 1135 aaPredicted RBP13.26□□□□□ -0.29
LIMK1-205ENST00000483414 ORAI2Q96SN7 254 aa13.26□□□□□ -0.29
LIMK1-205ENST00000483414 PEAK1Q9H792 1746 aa13.26□□□□□ -0.29
LIMK1-205ENST00000483414 BRINP3Q76B58 766 aa13.26□□□□□ -0.29
LIMK1-205ENST00000483414 NFAT5O94916 1531 aa13.26□□□□□ -0.29
LIMK1-205ENST00000483414 ACEP12821 1306 aa13.25□□□□□ -0.29
LIMK1-205ENST00000483414 PANK3Q9H999 370 aa13.25□□□□□ -0.29
LIMK1-205ENST00000483414 BRD4O60885 1362 aaPredicted RBP13.25□□□□□ -0.29
LIMK1-205ENST00000483414 LTN1O94822 1766 aa13.25□□□□□ -0.29
LIMK1-205ENST00000483414 PARD3Q8TEW0 1356 aa13.24□□□□□ -0.29
LIMK1-205ENST00000483414 ANP32EQ9BTT0 268 aa13.24□□□□□ -0.29
LIMK1-205ENST00000483414 COL18A1P39060 1754 aa13.24□□□□□ -0.29
LIMK1-205ENST00000483414 MAP2P11137 1827 aaKnown RBP13.24□□□□□ -0.29
LIMK1-205ENST00000483414 SLAIN2Q9P270 581 aa13.23□□□□□ -0.29
LIMK1-205ENST00000483414 CERKQ8TCT0 537 aa13.23□□□□□ -0.29
LIMK1-205ENST00000483414 USP31Q70CQ4 1352 aa13.23□□□□□ -0.29
LIMK1-205ENST00000483414 SMG6Q86US8 1419 aaKnown RBP13.22□□□□□ -0.29
LIMK1-205ENST00000483414 SOS2Q07890 1332 aaPredicted RBP13.22□□□□□ -0.29
LIMK1-205ENST00000483414 KTN1Q86UP2 1357 aaKnown RBP13.22□□□□□ -0.29
LIMK1-205ENST00000483414 PHF8Q9UPP1 1060 aa13.21□□□□□ -0.29
LIMK1-205ENST00000483414 SBNO1A3KN83 1393 aa13.21□□□□□ -0.29
LIMK1-205ENST00000483414 NUTM2FA1L443 756 aa13.21□□□□□ -0.29
LIMK1-205ENST00000483414 ATF3P18847 181 aa13.21□□□□□ -0.29
LIMK1-205ENST00000483414 NSD2O96028 1365 aa13.21□□□□□ -0.3
LIMK1-205ENST00000483414 RGPD1P0DJD0 1748 aa13.2□□□□□ -0.3
LIMK1-205ENST00000483414 LMO7Q8WWI1 1683 aa13.2□□□□□ -0.3
LIMK1-205ENST00000483414 TNS3Q68CZ2 1445 aa13.19□□□□□ -0.3
LIMK1-205ENST00000483414 CNGB1Q14028 1251 aaPredicted RBP13.19□□□□□ -0.3
LIMK1-205ENST00000483414 PMFBP1Q8TBY8 1022 aa13.19□□□□□ -0.3
LIMK1-205ENST00000483414 COL3A1P02461 1466 aaPredicted RBP13.19□□□□□ -0.3
LIMK1-205ENST00000483414 CAMTA1Q9Y6Y1 1673 aa13.18□□□□□ -0.3
LIMK1-205ENST00000483414 ZNF692Q9BU19 519 aaPredicted RBP13.18□□□□□ -0.3
LIMK1-205ENST00000483414 TTC21BQ7Z4L5 1316 aa13.18□□□□□ -0.3
LIMK1-205ENST00000483414 FKBP8Q14318 412 aa13.18□□□□□ -0.3
LIMK1-205ENST00000483414 ESCO1Q5FWF5 840 aa13.18□□□□□ -0.3
LIMK1-205ENST00000483414 RGPD5Q99666 1765 aa13.18□□□□□ -0.3
LIMK1-205ENST00000483414 FYB1O15117 783 aa13.18□□□□□ -0.3
LIMK1-205ENST00000483414 ANP32CO43423 234 aa13.18□□□□□ -0.3
LIMK1-205ENST00000483414 C14orf37Q86TY3 774 aa13.17□□□□□ -0.3
LIMK1-205ENST00000483414 USP19O94966 1318 aa13.17□□□□□ -0.3
LIMK1-205ENST00000483414 NEFLP07196 543 aa13.17□□□□□ -0.3
LIMK1-205ENST00000483414 TERF2IPQ9NYB0 399 aa13.17□□□□□ -0.3
LIMK1-205ENST00000483414 TTC21AQ8NDW8 1320 aa13.17□□□□□ -0.3
LIMK1-205ENST00000483414 DDX17Q92841 729 aaKnown RBP13.17□□□□□ -0.3
LIMK1-205ENST00000483414 ABCC6O95255 1503 aa13.16□□□□□ -0.3
LIMK1-205ENST00000483414 TMC1Q8TDI8 760 aa13.16□□□□□ -0.3
LIMK1-205ENST00000483414 NRAPQ86VF7 1730 aa13.15□□□□□ -0.3
LIMK1-205ENST00000483414 SPATA31A3Q5VYP0 1347 aa13.14□□□□□ -0.31
LIMK1-205ENST00000483414 NPHP3Q7Z494 1330 aa13.14□□□□□ -0.31
LIMK1-205ENST00000483414 AATKQ6ZMQ8 1374 aa13.14□□□□□ -0.31
LIMK1-205ENST00000483414 FOXO3O43524 673 aa13.14□□□□□ -0.31
LIMK1-205ENST00000483414 HDGFL2Q7Z4V5 671 aaPredicted RBP13.14□□□□□ -0.31
LIMK1-205ENST00000483414 PRKRIP1Q9H875 184 aaPredicted RBP13.14□□□□□ -0.31
LIMK1-205ENST00000483414 PLCH1Q4KWH8 1693 aa13.13□□□□□ -0.31
LIMK1-205ENST00000483414 NME9Q86XW9 330 aa13.13□□□□□ -0.31
LIMK1-205ENST00000483414 ZRANB1Q9UGI0 708 aa13.13□□□□□ -0.31
LIMK1-205ENST00000483414 CGNL1Q0VF96 1302 aa13.13□□□□□ -0.31
LIMK1-205ENST00000483414 POLR3GLQ9BT43 218 aa13.12□□□□□ -0.31
LIMK1-205ENST00000483414 RGPD2P0DJD1 1756 aa13.12□□□□□ -0.31
LIMK1-205ENST00000483414 PNPLA6Q8IY17 1366 aa13.11□□□□□ -0.31
LIMK1-205ENST00000483414 WNK3Q9BYP7 1800 aa13.11□□□□□ -0.31
LIMK1-205ENST00000483414 KRT28Q7Z3Y7 464 aa13.11□□□□□ -0.31
LIMK1-205ENST00000483414 INSRP06213 1382 aa13.11□□□□□ -0.31
LIMK1-205ENST00000483414 FAM208AQ9UK61 1670 aaKnown RBP13.1□□□□□ -0.31
LIMK1-205ENST00000483414 NGDNQ8NEJ9 315 aaKnown RBP13.1□□□□□ -0.31
LIMK1-205ENST00000483414 CDK12Q9NYV4 1490 aaPredicted RBP13.1□□□□□ -0.31
LIMK1-205ENST00000483414 TOM1O60784 492 aa13.1□□□□□ -0.31
LIMK1-205ENST00000483414 KNSTRNQ9Y448 316 aa13.09□□□□□ -0.31
LIMK1-205ENST00000483414 NWD2Q9ULI1 1742 aa13.09□□□□□ -0.31
LIMK1-205ENST00000483414 XPCQ01831 940 aaPredicted RBP13.09□□□□□ -0.31
LIMK1-205ENST00000483414 COL14A1Q05707 1796 aaKnown RBP13.09□□□□□ -0.31
LIMK1-205ENST00000483414 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.08□□□□□ -0.31
LIMK1-205ENST00000483414 ARHGEF10O15013 1369 aa13.08□□□□□ -0.31
LIMK1-205ENST00000483414 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.07□□□□□ -0.32
LIMK1-205ENST00000483414 GGNBP2Q9H3C7 697 aa13.07□□□□□ -0.32
LIMK1-205ENST00000483414 LRP6O75581 1613 aa13.07□□□□□ -0.32
LIMK1-205ENST00000483414 CPDO75976 1380 aa13.07□□□□□ -0.32
LIMK1-205ENST00000483414 NCAPD2Q15021 1401 aa13.06□□□□□ -0.32
LIMK1-205ENST00000483414 UBAP1LF5GYI3 381 aa13.06□□□□□ -0.32
LIMK1-205ENST00000483414 PSME1Q06323 249 aa13.06□□□□□ -0.32
LIMK1-205ENST00000483414 RALBP1Q15311 655 aa13.06□□□□□ -0.32
LIMK1-205ENST00000483414 CC2D1BQ5T0F9 858 aaKnown RBP13.06□□□□□ -0.32
LIMK1-205ENST00000483414 PPP2R1AP30153 589 aa13.05□□□□□ -0.32
LIMK1-205ENST00000483414 CCDC184Q52MB2 194 aa13.05□□□□□ -0.32
LIMK1-205ENST00000483414 MYBBP1AQ9BQG0 1328 aaKnown RBP13.05□□□□□ -0.32
LIMK1-205ENST00000483414 KIF24Q5T7B8 1368 aa13.05□□□□□ -0.32
LIMK1-205ENST00000483414 SHANK3Q9BYB0 1731 aa13.04□□□□□ -0.32
LIMK1-205ENST00000483414 IRX6P78412 446 aaPredicted RBP13.04□□□□□ -0.32
LIMK1-205ENST00000483414 FBLN1P23142 703 aa13.03□□□□□ -0.32
LIMK1-205ENST00000483414 RTL1A6NKG5 1358 aa13.03□□□□□ -0.32
LIMK1-205ENST00000483414 POLKQ9UBT6 870 aa13.03□□□□□ -0.32
LIMK1-205ENST00000483414 HNRNPUQ00839 825 aaKnown RBP eCLIP13.03□□□□□ -0.32
LIMK1-205ENST00000483414 ABTB2Q8N961 1025 aa13.03□□□□□ -0.32
LIMK1-205ENST00000483414 PIP4K2BP78356 416 aa13□□□□□ -0.33
LIMK1-205ENST00000483414 COG3Q96JB2 828 aa13□□□□□ -0.33
LIMK1-205ENST00000483414 VIRMAQ69YN4 1812 aaKnown RBP13□□□□□ -0.33
LIMK1-205ENST00000483414 MAP3K19Q56UN5 1328 aa13□□□□□ -0.33
LIMK1-205ENST00000483414 ARHGEF25Q86VW2 580 aa13□□□□□ -0.33
LIMK1-205ENST00000483414 LRRC59Q96AG4 307 aaKnown RBP13□□□□□ -0.33
LIMK1-205ENST00000483414 CCER2I3L3R5 266 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms