RNA–Protein interactions for RNA: ENST00000480563.1

TTC28-206, Transcript of tetratricopeptide repeat domain 28, humanhuman

TSL 3

Gene TTC28, Length 407 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-206ENST00000480563 PRDM11Q9NQV5 511 aa16.76■□□□□ 0.27
TTC28-206ENST00000480563 DLC1Q96QB1 1528 aa16.75■□□□□ 0.27
TTC28-206ENST00000480563 PRR36Q9H6K5 1346 aa16.75■□□□□ 0.27
TTC28-206ENST00000480563 COL14A1Q05707 1796 aaKnown RBP16.75■□□□□ 0.27
TTC28-206ENST00000480563 NGDNQ8NEJ9 315 aaKnown RBP16.75■□□□□ 0.27
TTC28-206ENST00000480563 DISP2A7MBM2 1401 aa16.74■□□□□ 0.27
TTC28-206ENST00000480563 CAMKK2Q96RR4 588 aa16.74■□□□□ 0.27
TTC28-206ENST00000480563 WASLO00401 505 aaPredicted RBP16.73■□□□□ 0.27
TTC28-206ENST00000480563 TRIM37O94972 964 aa16.73■□□□□ 0.27
TTC28-206ENST00000480563 FAM196AQ6ZSG2 479 aa16.73■□□□□ 0.27
TTC28-206ENST00000480563 EIF3AQ14152 1382 aaKnown RBP16.73■□□□□ 0.27
TTC28-206ENST00000480563 RGPD1P0DJD0 1748 aa16.73■□□□□ 0.27
TTC28-206ENST00000480563 TRPM3Q9HCF6 1732 aaPredicted RBP16.73■□□□□ 0.27
TTC28-206ENST00000480563 SPATA31A1Q5TZJ5 1347 aa16.72■□□□□ 0.27
TTC28-206ENST00000480563 ADGRB2O60241 1585 aa16.72■□□□□ 0.27
TTC28-206ENST00000480563 APBA3O96018 575 aa16.71■□□□□ 0.27
TTC28-206ENST00000480563 STRN4Q9NRL3 753 aa16.71■□□□□ 0.27
TTC28-206ENST00000480563 ALS2Q96Q42 1657 aa16.71■□□□□ 0.27
TTC28-206ENST00000480563 KIAA0232Q92628 1395 aa16.7■□□□□ 0.26
TTC28-206ENST00000480563 CHRNA2Q15822 529 aa16.7■□□□□ 0.26
TTC28-206ENST00000480563 THSD7AQ9UPZ6 1657 aa16.69■□□□□ 0.26
TTC28-206ENST00000480563 ADGRB1O14514 1584 aa16.69■□□□□ 0.26
TTC28-206ENST00000480563 TULP4Q9NRJ4 1543 aa16.69■□□□□ 0.26
TTC28-206ENST00000480563 ZC3H6P61129 1189 aaKnown RBP16.68■□□□□ 0.26
TTC28-206ENST00000480563 USP35Q9P2H5 1018 aa16.68■□□□□ 0.26
TTC28-206ENST00000480563 KDM2AQ9Y2K7 1162 aa16.68■□□□□ 0.26
TTC28-206ENST00000480563 EVA1CP58658 441 aa16.67■□□□□ 0.26
TTC28-206ENST00000480563 PDE3BQ13370 1112 aa16.67■□□□□ 0.26
TTC28-206ENST00000480563 PARD3Q8TEW0 1356 aa16.66■□□□□ 0.26
TTC28-206ENST00000480563 NUTM2GQ5VZR2 741 aa16.66■□□□□ 0.26
TTC28-206ENST00000480563 NUDT16Q96DE0 195 aaKnown RBP16.66■□□□□ 0.26
TTC28-206ENST00000480563 TNS1Q9HBL0 1735 aaKnown RBP16.66■□□□□ 0.26
TTC28-206ENST00000480563 NBPF8Q3BBV2 869 aa16.65■□□□□ 0.26
TTC28-206ENST00000480563 NBPF14Q5TI25 921 aa16.65■□□□□ 0.26
TTC28-206ENST00000480563 BARGINQ6ZT62 677 aa16.65■□□□□ 0.26
TTC28-206ENST00000480563 DCAF11Q8TEB1 546 aa16.65■□□□□ 0.26
TTC28-206ENST00000480563 CRYBG1Q9Y4K1 1723 aa16.63■□□□□ 0.25
TTC28-206ENST00000480563 YY1P25490 414 aa16.63■□□□□ 0.25
TTC28-206ENST00000480563 LARP1Q6PKG0 1096 aaKnown RBP16.61■□□□□ 0.25
TTC28-206ENST00000480563 STAC3Q96MF2 364 aa16.61■□□□□ 0.25
TTC28-206ENST00000480563 CDK19Q9BWU1 502 aa16.61■□□□□ 0.25
TTC28-206ENST00000480563 SSH2Q76I76 1423 aa16.61■□□□□ 0.25
TTC28-206ENST00000480563 TCP11L2Q8N4U5 519 aa16.6■□□□□ 0.25
TTC28-206ENST00000480563 ATP7BP35670 1465 aa16.6■□□□□ 0.25
TTC28-206ENST00000480563 ABTB2Q8N961 1025 aa16.59■□□□□ 0.25
TTC28-206ENST00000480563 SPON1Q9HCB6 807 aa16.59■□□□□ 0.25
TTC28-206ENST00000480563 PPP1R1BQ9UD71 204 aaPredicted RBP16.59■□□□□ 0.25
TTC28-206ENST00000480563 CCDC61Q9Y6R9 512 aa16.59■□□□□ 0.25
TTC28-206ENST00000480563 ACEP12821 1306 aa16.59■□□□□ 0.25
TTC28-206ENST00000480563 POLR3AO14802 1390 aaPredicted RBP16.57■□□□□ 0.24
TTC28-206ENST00000480563 PLEKHG3A1L390 1219 aa16.57■□□□□ 0.24
TTC28-206ENST00000480563 KCNQ2O43526 872 aa16.57■□□□□ 0.24
TTC28-206ENST00000480563 THRAP3Q9Y2W1 955 aaKnown RBP16.57■□□□□ 0.24
TTC28-206ENST00000480563 CAMTA1Q9Y6Y1 1673 aa16.56■□□□□ 0.24
TTC28-206ENST00000480563 PHRF1Q9P1Y6 1649 aaKnown RBP16.56■□□□□ 0.24
TTC28-206ENST00000480563 RAB3GAP2Q9H2M9 1393 aa16.56■□□□□ 0.24
TTC28-206ENST00000480563 DCAF8L1A6NGE4 600 aa16.56■□□□□ 0.24
TTC28-206ENST00000480563 CPDO75976 1380 aa16.55■□□□□ 0.24
TTC28-206ENST00000480563 RREB1Q92766 1687 aa16.54■□□□□ 0.24
TTC28-206ENST00000480563 C11orf95C9JLR9 678 aaPredicted RBP16.54■□□□□ 0.24
TTC28-206ENST00000480563 GCP02774 474 aa16.54■□□□□ 0.24
TTC28-206ENST00000480563 NLRP13Q86W25 1043 aa16.54■□□□□ 0.24
TTC28-206ENST00000480563 ITSN1Q15811 1721 aa16.53■□□□□ 0.24
TTC28-206ENST00000480563 USP19O94966 1318 aa16.53■□□□□ 0.24
TTC28-206ENST00000480563 NUP188Q5SRE5 1749 aa16.53■□□□□ 0.24
TTC28-206ENST00000480563 NRKQ7Z2Y5 1582 aa16.51■□□□□ 0.23
TTC28-206ENST00000480563 NINLQ9Y2I6 1382 aa16.51■□□□□ 0.23
TTC28-206ENST00000480563 ARHGEF28Q8N1W1 1705 aaKnown RBP16.5■□□□□ 0.23
TTC28-206ENST00000480563 ZBTB7CA1YPR0 619 aa16.5■□□□□ 0.23
TTC28-206ENST00000480563 PLSCR1O15162 318 aa16.5■□□□□ 0.23
TTC28-206ENST00000480563 LMO7Q8WWI1 1683 aa16.5■□□□□ 0.23
TTC28-206ENST00000480563 COL5A2P05997 1499 aaPredicted RBP16.48■□□□□ 0.23
TTC28-206ENST00000480563 OVOS2A0A0G2JMS6 1433 aa16.48■□□□□ 0.23
TTC28-206ENST00000480563 OVOS2A0A0J9YW53 1432 aa16.48■□□□□ 0.23
TTC28-206ENST00000480563 CRB1P82279 1406 aa16.48■□□□□ 0.23
TTC28-206ENST00000480563 OVOS2Q6IE36 1432 aa16.48■□□□□ 0.23
TTC28-206ENST00000480563 SRPK2P78362 688 aaKnown RBP16.48■□□□□ 0.23
TTC28-206ENST00000480563 DDB1Q16531 1140 aa16.48■□□□□ 0.23
TTC28-206ENST00000480563 BCL11BQ9C0K0 894 aaPredicted RBP16.47■□□□□ 0.23
TTC28-206ENST00000480563 TOPAZ1Q8N9V7 1692 aa16.46■□□□□ 0.23
TTC28-206ENST00000480563 NLRP6P59044 892 aa16.46■□□□□ 0.23
TTC28-206ENST00000480563 TOM1L2Q6ZVM7 507 aa16.46■□□□□ 0.23
TTC28-206ENST00000480563 PTF1AQ7RTS3 328 aa16.46■□□□□ 0.23
TTC28-206ENST00000480563 ANO8Q9HCE9 1232 aaPredicted RBP16.46■□□□□ 0.23
TTC28-206ENST00000480563 CABP2Q9NPB3 220 aa16.46■□□□□ 0.23
TTC28-206ENST00000480563 PPIP5K1Q6PFW1 1433 aa16.45■□□□□ 0.22
TTC28-206ENST00000480563 PARP4Q9UKK3 1724 aaKnown RBP16.45■□□□□ 0.22
TTC28-206ENST00000480563 NBPF1Q3BBV0 1214 aa16.45■□□□□ 0.22
TTC28-206ENST00000480563 PDGFDQ9GZP0 370 aaPredicted RBP16.45■□□□□ 0.22
TTC28-206ENST00000480563 AATKQ6ZMQ8 1374 aa16.45■□□□□ 0.22
TTC28-206ENST00000480563 BRD4O60885 1362 aaPredicted RBP16.44■□□□□ 0.22
TTC28-206ENST00000480563 PROM2Q8N271 834 aa16.44■□□□□ 0.22
TTC28-206ENST00000480563 ZBTB7AO95365 584 aa16.43■□□□□ 0.22
TTC28-206ENST00000480563 MARCH10Q8NA82 808 aaPredicted RBP16.43■□□□□ 0.22
TTC28-206ENST00000480563 CABP1Q9NZU7 370 aa16.43■□□□□ 0.22
TTC28-206ENST00000480563 PEAK1Q9H792 1746 aa16.42■□□□□ 0.22
TTC28-206ENST00000480563 CDCA7Q9BWT1 371 aaPredicted RBP16.41■□□□□ 0.22
TTC28-206ENST00000480563 ATF5Q9Y2D1 282 aaPredicted RBP16.41■□□□□ 0.22
TTC28-206ENST00000480563 AXIN2Q9Y2T1 843 aa16.41■□□□□ 0.22
TTC28-206ENST00000480563 CENPJQ9HC77 1338 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms