RNA–Protein interactions for RNA: ENST00000479440.1

DDX56-210, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-210ENST00000479440 ACIN1Q9UKV3 1341 aaKnown RBP23.9■■□□□ 1.42
DDX56-210ENST00000479440 SPATA31A5Q5VU36 1347 aa23.89■■□□□ 1.42
DDX56-210ENST00000479440 SPATA31A7Q8IWB4 1347 aa23.89■■□□□ 1.42
DDX56-210ENST00000479440 EN1Q05925 392 aaPredicted RBP23.89■■□□□ 1.41
DDX56-210ENST00000479440 CRYBG1Q9Y4K1 1723 aa23.88■■□□□ 1.41
DDX56-210ENST00000479440 ADGRB1O14514 1584 aa23.87■■□□□ 1.41
DDX56-210ENST00000479440 R3HDM1Q15032 1099 aaKnown RBP23.85■■□□□ 1.41
DDX56-210ENST00000479440 PRDM11Q9NQV5 511 aa23.84■■□□□ 1.41
DDX56-210ENST00000479440 FAM182BQ5T319 152 aa23.83■■□□□ 1.41
DDX56-210ENST00000479440 HIRIP3Q9BW71 556 aaPredicted RBP23.83■■□□□ 1.41
DDX56-210ENST00000479440 MINK1Q8N4C8 1332 aaPredicted RBP23.82■■□□□ 1.4
DDX56-210ENST00000479440 PRR36Q9H6K5 1346 aa23.82■■□□□ 1.4
DDX56-210ENST00000479440 PARD3Q8TEW0 1356 aa23.81■■□□□ 1.4
DDX56-210ENST00000479440 TRAK1Q9UPV9 953 aa23.81■■□□□ 1.4
DDX56-210ENST00000479440 ITSN1Q15811 1721 aa23.81■■□□□ 1.4
DDX56-210ENST00000479440 PAK3O75914 559 aaPredicted RBP23.8■■□□□ 1.4
DDX56-210ENST00000479440 NGDNQ8NEJ9 315 aaKnown RBP23.8■■□□□ 1.4
DDX56-210ENST00000479440 PHRF1Q9P1Y6 1649 aaKnown RBP23.8■■□□□ 1.4
DDX56-210ENST00000479440 ATP7BP35670 1465 aa23.8■■□□□ 1.4
DDX56-210ENST00000479440 EZH2Q15910 746 aaKnown RBP23.79■■□□□ 1.4
DDX56-210ENST00000479440 WASLO00401 505 aaPredicted RBP23.78■■□□□ 1.4
DDX56-210ENST00000479440 SPATA31A1Q5TZJ5 1347 aa23.78■■□□□ 1.4
DDX56-210ENST00000479440 FAM196AQ6ZSG2 479 aa23.77■■□□□ 1.4
DDX56-210ENST00000479440 KIAA0232Q92628 1395 aa23.77■■□□□ 1.4
DDX56-210ENST00000479440 RREB1Q92766 1687 aa23.74■■□□□ 1.39
DDX56-210ENST00000479440 CAMKK2Q96RR4 588 aa23.74■■□□□ 1.39
DDX56-210ENST00000479440 TRIM37O94972 964 aa23.73■■□□□ 1.39
DDX56-210ENST00000479440 STRN4Q9NRL3 753 aa23.73■■□□□ 1.39
DDX56-210ENST00000479440 APBA3O96018 575 aa23.71■■□□□ 1.39
DDX56-210ENST00000479440 ARHGEF28Q8N1W1 1705 aaKnown RBP23.7■■□□□ 1.39
DDX56-210ENST00000479440 SSH2Q76I76 1423 aa23.7■■□□□ 1.38
DDX56-210ENST00000479440 CHRNA2Q15822 529 aa23.7■■□□□ 1.38
DDX56-210ENST00000479440 NUP188Q5SRE5 1749 aa23.7■■□□□ 1.38
DDX56-210ENST00000479440 NRKQ7Z2Y5 1582 aa23.69■■□□□ 1.38
DDX56-210ENST00000479440 BARGINQ6ZT62 677 aa23.68■■□□□ 1.38
DDX56-210ENST00000479440 TOPAZ1Q8N9V7 1692 aa23.67■■□□□ 1.38
DDX56-210ENST00000479440 PDE3BQ13370 1112 aa23.67■■□□□ 1.38
DDX56-210ENST00000479440 ZC3H6P61129 1189 aaKnown RBP23.66■■□□□ 1.38
DDX56-210ENST00000479440 NBPF8Q3BBV2 869 aa23.66■■□□□ 1.38
DDX56-210ENST00000479440 NBPF14Q5TI25 921 aa23.66■■□□□ 1.38
DDX56-210ENST00000479440 NUDT16Q96DE0 195 aaKnown RBP23.66■■□□□ 1.38
DDX56-210ENST00000479440 STAC3Q96MF2 364 aa23.66■■□□□ 1.38
DDX56-210ENST00000479440 USP35Q9P2H5 1018 aa23.66■■□□□ 1.38
DDX56-210ENST00000479440 EVA1CP58658 441 aa23.65■■□□□ 1.38
DDX56-210ENST00000479440 KDM2AQ9Y2K7 1162 aa23.65■■□□□ 1.38
DDX56-210ENST00000479440 DCAF11Q8TEB1 546 aa23.64■■□□□ 1.37
DDX56-210ENST00000479440 POLR3AO14802 1390 aaPredicted RBP23.64■■□□□ 1.37
DDX56-210ENST00000479440 LMO7Q8WWI1 1683 aa23.63■■□□□ 1.37
DDX56-210ENST00000479440 RAB3GAP2Q9H2M9 1393 aa23.63■■□□□ 1.37
DDX56-210ENST00000479440 YY1P25490 414 aa23.62■■□□□ 1.37
DDX56-210ENST00000479440 CPDO75976 1380 aa23.62■■□□□ 1.37
DDX56-210ENST00000479440 NUTM2GQ5VZR2 741 aa23.61■■□□□ 1.37
DDX56-210ENST00000479440 TCP11L2Q8N4U5 519 aa23.61■■□□□ 1.37
DDX56-210ENST00000479440 CAMTA1Q9Y6Y1 1673 aa23.6■■□□□ 1.37
DDX56-210ENST00000479440 PPP1R1BQ9UD71 204 aaPredicted RBP23.6■■□□□ 1.37
DDX56-210ENST00000479440 THRAP3Q9Y2W1 955 aaKnown RBP23.6■■□□□ 1.37
DDX56-210ENST00000479440 PARP4Q9UKK3 1724 aaKnown RBP23.59■■□□□ 1.37
DDX56-210ENST00000479440 C11orf95C9JLR9 678 aaPredicted RBP23.59■■□□□ 1.37
DDX56-210ENST00000479440 ACEP12821 1306 aa23.59■■□□□ 1.37
DDX56-210ENST00000479440 NINLQ9Y2I6 1382 aa23.58■■□□□ 1.37
DDX56-210ENST00000479440 LARP1Q6PKG0 1096 aaKnown RBP23.58■■□□□ 1.37
DDX56-210ENST00000479440 USP19O94966 1318 aa23.58■■□□□ 1.36
DDX56-210ENST00000479440 DCAF8L1A6NGE4 600 aa23.57■■□□□ 1.36
DDX56-210ENST00000479440 CDK19Q9BWU1 502 aa23.57■■□□□ 1.36
DDX56-210ENST00000479440 SPON1Q9HCB6 807 aa23.57■■□□□ 1.36
DDX56-210ENST00000479440 RGPD3A6NKT7 1758 aaPredicted RBP23.56■■□□□ 1.36
DDX56-210ENST00000479440 RGPD4Q7Z3J3 1758 aa23.56■■□□□ 1.36
DDX56-210ENST00000479440 ABTB2Q8N961 1025 aa23.56■■□□□ 1.36
DDX56-210ENST00000479440 CCDC61Q9Y6R9 512 aa23.56■■□□□ 1.36
DDX56-210ENST00000479440 OVOS2A0A0G2JMS6 1433 aa23.56■■□□□ 1.36
DDX56-210ENST00000479440 OVOS2A0A0J9YW53 1432 aa23.56■■□□□ 1.36
DDX56-210ENST00000479440 OVOS2Q6IE36 1432 aa23.56■■□□□ 1.36
DDX56-210ENST00000479440 COL5A2P05997 1499 aaPredicted RBP23.56■■□□□ 1.36
DDX56-210ENST00000479440 PLEKHG3A1L390 1219 aa23.53■■□□□ 1.36
DDX56-210ENST00000479440 KCNQ2O43526 872 aa23.53■■□□□ 1.36
DDX56-210ENST00000479440 CRB1P82279 1406 aa23.52■■□□□ 1.36
DDX56-210ENST00000479440 NLRP13Q86W25 1043 aa23.51■■□□□ 1.35
DDX56-210ENST00000479440 LRRC37A3O60309 1634 aa23.51■■□□□ 1.35
DDX56-210ENST00000479440 KIAA1210Q9ULL0 1709 aa23.5■■□□□ 1.35
DDX56-210ENST00000479440 BRD4O60885 1362 aaPredicted RBP23.5■■□□□ 1.35
DDX56-210ENST00000479440 PEAK1Q9H792 1746 aa23.5■■□□□ 1.35
DDX56-210ENST00000479440 GCP02774 474 aa23.49■■□□□ 1.35
DDX56-210ENST00000479440 PPIP5K1Q6PFW1 1433 aa23.49■■□□□ 1.35
DDX56-210ENST00000479440 CASZ1Q86V15 1759 aa23.45■■□□□ 1.34
DDX56-210ENST00000479440 SLIT3O75094 1523 aa23.44■■□□□ 1.34
DDX56-210ENST00000479440 PLSCR1O15162 318 aa23.44■■□□□ 1.34
DDX56-210ENST00000479440 SRPK2P78362 688 aaKnown RBP23.44■■□□□ 1.34
DDX56-210ENST00000479440 AATKQ6ZMQ8 1374 aa23.43■■□□□ 1.34
DDX56-210ENST00000479440 WNK3Q9BYP7 1800 aa23.43■■□□□ 1.34
DDX56-210ENST00000479440 ZBTB7CA1YPR0 619 aa23.42■■□□□ 1.34
DDX56-210ENST00000479440 DDB1Q16531 1140 aa23.42■■□□□ 1.34
DDX56-210ENST00000479440 USP6P35125 1406 aa23.41■■□□□ 1.34
DDX56-210ENST00000479440 SBF2Q86WG5 1849 aa23.4■■□□□ 1.34
DDX56-210ENST00000479440 ANO8Q9HCE9 1232 aaPredicted RBP23.4■■□□□ 1.34
DDX56-210ENST00000479440 QRICH2Q9H0J4 1663 aa23.39■■□□□ 1.34
DDX56-210ENST00000479440 TOM1L2Q6ZVM7 507 aa23.39■■□□□ 1.33
DDX56-210ENST00000479440 BCL11BQ9C0K0 894 aaPredicted RBP23.39■■□□□ 1.33
DDX56-210ENST00000479440 CENPJQ9HC77 1338 aaPredicted RBP23.38■■□□□ 1.33
DDX56-210ENST00000479440 BCL9O00512 1426 aa23.38■■□□□ 1.33
DDX56-210ENST00000479440 AKAP12Q02952 1782 aa23.37■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms