RNA–Protein interactions for RNA: ENST00000478021.1

TRAF4-211, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-211ENST00000478021 CABP1Q9NZU7 370 aa32.22■■■□□ 2.75
TRAF4-211ENST00000478021 SBNO2Q9Y2G9 1366 aa32.21■■■□□ 2.75
TRAF4-211ENST00000478021 CRYBG1Q9Y4K1 1723 aa32.21■■■□□ 2.75
TRAF4-211ENST00000478021 RXRBP28702 533 aa32.21■■■□□ 2.75
TRAF4-211ENST00000478021 NUTM2GQ5VZR2 741 aa32.17■■■□□ 2.74
TRAF4-211ENST00000478021 TIMELESSQ9UNS1 1208 aa32.17■■■□□ 2.74
TRAF4-211ENST00000478021 PLCH1Q4KWH8 1693 aa32.17■■■□□ 2.74
TRAF4-211ENST00000478021 BCL9LQ86UU0 1499 aa32.16■■■□□ 2.74
TRAF4-211ENST00000478021 PHRF1Q9P1Y6 1649 aaKnown RBP32.15■■■□□ 2.74
TRAF4-211ENST00000478021 TRPC5Q9UL62 973 aaPredicted RBP32.14■■■□□ 2.74
TRAF4-211ENST00000478021 ATAD2Q6PL18 1390 aa32.14■■■□□ 2.74
TRAF4-211ENST00000478021 ATRNO75882 1429 aa32.14■■■□□ 2.74
TRAF4-211ENST00000478021 SLIT2O94813 1529 aa32.14■■■□□ 2.74
TRAF4-211ENST00000478021 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.14■■■□□ 2.74
TRAF4-211ENST00000478021 ST20-MTHFSA0A0A6YYL1 179 aa32.13■■■□□ 2.73
TRAF4-211ENST00000478021 RBM6P78332 1123 aaKnown RBP32.13■■■□□ 2.73
TRAF4-211ENST00000478021 USP6P35125 1406 aa32.12■■■□□ 2.73
TRAF4-211ENST00000478021 AKAP12Q02952 1782 aa32.12■■■□□ 2.73
TRAF4-211ENST00000478021 ABTB2Q8N961 1025 aa32.1■■■□□ 2.73
TRAF4-211ENST00000478021 CDK12Q9NYV4 1490 aaPredicted RBP32.1■■■□□ 2.73
TRAF4-211ENST00000478021 USP47Q96K76 1375 aa32.09■■■□□ 2.73
TRAF4-211ENST00000478021 NWD2Q9ULI1 1742 aa32.09■■■□□ 2.73
TRAF4-211ENST00000478021 RGS12O14924 1447 aa32.09■■■□□ 2.73
TRAF4-211ENST00000478021 FAM83GA6ND36 823 aa32.08■■■□□ 2.73
TRAF4-211ENST00000478021 TESK2Q96S53 571 aa32.08■■■□□ 2.73
TRAF4-211ENST00000478021 UNC5CLQ8IV45 518 aa32.07■■■□□ 2.72
TRAF4-211ENST00000478021 COL14A1Q05707 1796 aaKnown RBP32.06■■■□□ 2.72
TRAF4-211ENST00000478021 BRD4O60885 1362 aaPredicted RBP32.05■■■□□ 2.72
TRAF4-211ENST00000478021 NRKQ7Z2Y5 1582 aa32.03■■■□□ 2.72
TRAF4-211ENST00000478021 SSH2Q76I76 1423 aa32.02■■■□□ 2.72
TRAF4-211ENST00000478021 TMC1Q8TDI8 760 aa32.02■■■□□ 2.72
TRAF4-211ENST00000478021 NRAPQ86VF7 1730 aa32.02■■■□□ 2.72
TRAF4-211ENST00000478021 PIK3C2AO00443 1686 aa32.02■■■□□ 2.72
TRAF4-211ENST00000478021 CPSF1Q10570 1443 aaKnown RBP32.01■■■□□ 2.72
TRAF4-211ENST00000478021 MON2Q7Z3U7 1717 aa32.01■■■□□ 2.72
TRAF4-211ENST00000478021 GLI3P10071 1580 aa32■■■□□ 2.71
TRAF4-211ENST00000478021 KIAA0232Q92628 1395 aa32■■■□□ 2.71
TRAF4-211ENST00000478021 ZC3H6P61129 1189 aaKnown RBP32■■■□□ 2.71
TRAF4-211ENST00000478021 NLRP13Q86W25 1043 aa32■■■□□ 2.71
TRAF4-211ENST00000478021 GJD4Q96KN9 370 aaPredicted RBP32■■■□□ 2.71
TRAF4-211ENST00000478021 ZNF692Q9BU19 519 aaPredicted RBP32■■■□□ 2.71
TRAF4-211ENST00000478021 PRDM11Q9NQV5 511 aa32■■■□□ 2.71
TRAF4-211ENST00000478021 USP19O94966 1318 aa32■■■□□ 2.71
TRAF4-211ENST00000478021 KTN1Q86UP2 1357 aaKnown RBP31.99■■■□□ 2.71
TRAF4-211ENST00000478021 BTG4Q9NY30 223 aa31.98■■■□□ 2.71
TRAF4-211ENST00000478021 CD163L1Q9NR16 1453 aa31.97■■■□□ 2.71
TRAF4-211ENST00000478021 SLC12A5Q9H2X9 1139 aa31.97■■■□□ 2.71
TRAF4-211ENST00000478021 TTC21BQ7Z4L5 1316 aa31.97■■■□□ 2.71
TRAF4-211ENST00000478021 NLRP6P59044 892 aa31.96■■■□□ 2.71
TRAF4-211ENST00000478021 CHRNA2Q15822 529 aa31.96■■■□□ 2.71
TRAF4-211ENST00000478021 CCDC9Q9Y3X0 531 aaKnown RBP31.95■■■□□ 2.71
TRAF4-211ENST00000478021 VPS72Q15906 364 aa31.94■■■□□ 2.7
TRAF4-211ENST00000478021 PUS7Q96PZ0 661 aaKnown RBP31.94■■■□□ 2.7
TRAF4-211ENST00000478021 SLIT3O75094 1523 aa31.91■■■□□ 2.7
TRAF4-211ENST00000478021 SLC24A1O60721 1099 aa31.91■■■□□ 2.7
TRAF4-211ENST00000478021 GCP02774 474 aa31.91■■■□□ 2.7
TRAF4-211ENST00000478021 TMF1P82094 1093 aa31.91■■■□□ 2.7
TRAF4-211ENST00000478021 HDGFL2Q7Z4V5 671 aaPredicted RBP31.91■■■□□ 2.7
TRAF4-211ENST00000478021 TTC21AQ8NDW8 1320 aa31.9■■■□□ 2.7
TRAF4-211ENST00000478021 SUGP2Q8IX01 1082 aaKnown RBP eCLIP31.89■■■□□ 2.7
TRAF4-211ENST00000478021 A0A1W2PP64 1363 aa31.88■■■□□ 2.69
TRAF4-211ENST00000478021 ZBTB7CA1YPR0 619 aa31.87■■■□□ 2.69
TRAF4-211ENST00000478021 CPDO75976 1380 aa31.86■■■□□ 2.69
TRAF4-211ENST00000478021 TERF2IPQ9NYB0 399 aa31.86■■■□□ 2.69
TRAF4-211ENST00000478021 LMO7Q8WWI1 1683 aa31.86■■■□□ 2.69
TRAF4-211ENST00000478021 NINLQ9Y2I6 1382 aa31.84■■■□□ 2.69
TRAF4-211ENST00000478021 STRN4Q9NRL3 753 aa31.84■■■□□ 2.69
TRAF4-211ENST00000478021 ZRANB1Q9UGI0 708 aa31.84■■■□□ 2.69
TRAF4-211ENST00000478021 EDC4Q6P2E9 1401 aaKnown RBP31.83■■■□□ 2.69
TRAF4-211ENST00000478021 CAMTA1Q9Y6Y1 1673 aa31.83■■■□□ 2.69
TRAF4-211ENST00000478021 BRWD3Q6RI45 1802 aa31.82■■■□□ 2.68
TRAF4-211ENST00000478021 SOX12O15370 315 aa31.82■■■□□ 2.68
TRAF4-211ENST00000478021 NME9Q86XW9 330 aa31.82■■■□□ 2.68
TRAF4-211ENST00000478021 UPF1Q92900 1129 aaKnown RBP eCLIP31.82■■■□□ 2.68
TRAF4-211ENST00000478021 USP54Q70EL1 1684 aa31.79■■■□□ 2.68
TRAF4-211ENST00000478021 SPATA31A5Q5VU36 1347 aa31.78■■■□□ 2.68
TRAF4-211ENST00000478021 SPATA31A7Q8IWB4 1347 aa31.78■■■□□ 2.68
TRAF4-211ENST00000478021 SEPT12Q8IYM1 358 aa31.78■■■□□ 2.68
TRAF4-211ENST00000478021 FAM98CQ17RN3 349 aaKnown RBP31.77■■■□□ 2.68
TRAF4-211ENST00000478021 CDCA8Q53HL2 280 aa31.77■■■□□ 2.68
TRAF4-211ENST00000478021 A0A0G2JS52 829 aa31.76■■■□□ 2.67
TRAF4-211ENST00000478021 EVA1CP58658 441 aa31.76■■■□□ 2.67
TRAF4-211ENST00000478021 MYT1Q01538 1121 aa31.76■■■□□ 2.67
TRAF4-211ENST00000478021 USP31Q70CQ4 1352 aa31.76■■■□□ 2.67
TRAF4-211ENST00000478021 MYOM1P52179 1685 aa31.76■■■□□ 2.67
TRAF4-211ENST00000478021 NFAT5O94916 1531 aa31.75■■■□□ 2.67
TRAF4-211ENST00000478021 HSPA5P11021 654 aaKnown RBP31.75■■■□□ 2.67
TRAF4-211ENST00000478021 EIF4G2P78344 907 aaKnown RBP eCLIP31.75■■■□□ 2.67
TRAF4-211ENST00000478021 KCNH5Q8NCM2 988 aa31.75■■■□□ 2.67
TRAF4-211ENST00000478021 ANKRD36BQ8N2N9 1353 aa31.75■■■□□ 2.67
TRAF4-211ENST00000478021 COL18A1P39060 1754 aa31.75■■■□□ 2.67
TRAF4-211ENST00000478021 SPATA31A1Q5TZJ5 1347 aa31.73■■■□□ 2.67
TRAF4-211ENST00000478021 COL5A2P05997 1499 aaPredicted RBP31.72■■■□□ 2.67
TRAF4-211ENST00000478021 RGPD5Q99666 1765 aa31.72■■■□□ 2.67
TRAF4-211ENST00000478021 ONECUT3O60422 494 aaPredicted RBP31.72■■■□□ 2.67
TRAF4-211ENST00000478021 AATKQ6ZMQ8 1374 aa31.71■■■□□ 2.67
TRAF4-211ENST00000478021 LARP1Q6PKG0 1096 aaKnown RBP31.71■■■□□ 2.67
TRAF4-211ENST00000478021 USP35Q9P2H5 1018 aa31.71■■■□□ 2.67
TRAF4-211ENST00000478021 ARHGEF25Q86VW2 580 aa31.7■■■□□ 2.67
TRAF4-211ENST00000478021 THSD7AQ9UPZ6 1657 aa31.69■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms