RNA–Protein interactions for RNA: ENST00000477983.1

LMBR1-216, Transcript of limb development membrane protein 1, humanhuman

TSL 2

Gene LMBR1, Length 605 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-216ENST00000477983 QPCTQ16769 361 aa10.66□□□□□ -0.7
LMBR1-216ENST00000477983 CSPP1Q1MSJ5 1256 aa10.66□□□□□ -0.7
LMBR1-216ENST00000477983 VARSP26640 1264 aaKnown RBP10.65□□□□□ -0.7
LMBR1-216ENST00000477983 CTHP32929 405 aa10.65□□□□□ -0.7
LMBR1-216ENST00000477983 LINC01559Q495D7 138 aa10.65□□□□□ -0.7
LMBR1-216ENST00000477983 ATP13A2Q9NQ11 1180 aa10.65□□□□□ -0.7
LMBR1-216ENST00000477983 NUTM2BA6NNL0 878 aaPredicted RBP10.64□□□□□ -0.71
LMBR1-216ENST00000477983 NUTM2EB1AL46 878 aaPredicted RBP10.64□□□□□ -0.71
LMBR1-216ENST00000477983 CLK2P49760 499 aaKnown RBP10.64□□□□□ -0.71
LMBR1-216ENST00000477983 NUTM2DQ5VT03 806 aaPredicted RBP10.64□□□□□ -0.71
LMBR1-216ENST00000477983 NUTM2AQ8IVF1 878 aaPredicted RBP10.64□□□□□ -0.71
LMBR1-216ENST00000477983 PER1O15534 1290 aaPredicted RBP10.63□□□□□ -0.71
LMBR1-216ENST00000477983 C11orf95C9JLR9 678 aaPredicted RBP10.62□□□□□ -0.71
LMBR1-216ENST00000477983 RTL5Q5HYW3 569 aaPredicted RBP10.62□□□□□ -0.71
LMBR1-216ENST00000477983 MAP10Q9P2G4 905 aa10.62□□□□□ -0.71
LMBR1-216ENST00000477983 WASF2Q9Y6W5 498 aa10.61□□□□□ -0.71
LMBR1-216ENST00000477983 PLEKHG3A1L390 1219 aa10.6□□□□□ -0.71
LMBR1-216ENST00000477983 POLR3EQ9NVU0 708 aa10.6□□□□□ -0.71
LMBR1-216ENST00000477983 KDM4CQ9H3R0 1056 aa10.59□□□□□ -0.71
LMBR1-216ENST00000477983 SENP2Q9HC62 589 aa10.59□□□□□ -0.71
LMBR1-216ENST00000477983 SKIV2LQ15477 1246 aaKnown RBP10.58□□□□□ -0.72
LMBR1-216ENST00000477983 LCE2AQ5TA79 106 aaPredicted RBP10.58□□□□□ -0.72
LMBR1-216ENST00000477983 HELBQ8NG08 1087 aaPredicted RBP10.57□□□□□ -0.72
LMBR1-216ENST00000477983 FOXJ1Q92949 421 aa10.57□□□□□ -0.72
LMBR1-216ENST00000477983 TRIM47Q96LD4 638 aa10.57□□□□□ -0.72
LMBR1-216ENST00000477983 CDK15Q96Q40 435 aa10.57□□□□□ -0.72
LMBR1-216ENST00000477983 GPBP1L1Q9HC44 474 aaPredicted RBP10.57□□□□□ -0.72
LMBR1-216ENST00000477983 TLL2Q9Y6L7 1015 aa10.57□□□□□ -0.72
LMBR1-216ENST00000477983 SH3D19Q5HYK7 790 aa10.56□□□□□ -0.72
LMBR1-216ENST00000477983 TREML4Q6UXN2 200 aa10.56□□□□□ -0.72
LMBR1-216ENST00000477983 ARMC2Q8NEN0 867 aa10.56□□□□□ -0.72
LMBR1-216ENST00000477983 FAM174AQ8TBP5 190 aa10.56□□□□□ -0.72
LMBR1-216ENST00000477983 TSC1Q92574 1164 aa10.56□□□□□ -0.72
LMBR1-216ENST00000477983 DDRGK1Q96HY6 314 aa10.56□□□□□ -0.72
LMBR1-216ENST00000477983 CAPN5O15484 640 aaPredicted RBP10.55□□□□□ -0.72
LMBR1-216ENST00000477983 KIFC2Q96AC6 838 aa10.55□□□□□ -0.72
LMBR1-216ENST00000477983 FAM117AQ9C073 453 aa10.55□□□□□ -0.72
LMBR1-216ENST00000477983 SNRPBP14678 240 aaKnown RBP10.54□□□□□ -0.72
LMBR1-216ENST00000477983 C4orf48Q5BLP8 95 aa10.54□□□□□ -0.72
LMBR1-216ENST00000477983 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.54□□□□□ -0.72
LMBR1-216ENST00000477983 PPP2R2DQ66LE6 453 aa10.53□□□□□ -0.72
LMBR1-216ENST00000477983 SH3RF1Q7Z6J0 888 aa10.53□□□□□ -0.72
LMBR1-216ENST00000477983 BPHLQ86WA6 291 aaPredicted RBP10.53□□□□□ -0.72
LMBR1-216ENST00000477983 CTDSPL2Q05D32 466 aa10.52□□□□□ -0.73
LMBR1-216ENST00000477983 NNTQ13423 1086 aa10.52□□□□□ -0.73
LMBR1-216ENST00000477983 TRIM46Q7Z4K8 759 aa10.52□□□□□ -0.73
LMBR1-216ENST00000477983 ADH1CP00326 375 aa10.51□□□□□ -0.73
LMBR1-216ENST00000477983 FBXO31Q5XUX0 539 aaPredicted RBP10.51□□□□□ -0.73
LMBR1-216ENST00000477983 KLF16Q9BXK1 252 aaPredicted RBP10.51□□□□□ -0.73
LMBR1-216ENST00000477983 PROCA1Q8NCQ7 364 aaPredicted RBP10.5□□□□□ -0.73
LMBR1-216ENST00000477983 C1QTNF2Q9BXJ5 285 aa10.5□□□□□ -0.73
LMBR1-216ENST00000477983 NBPF14Q5TI25 921 aa10.49□□□□□ -0.73
LMBR1-216ENST00000477983 SH3BP5LQ7L8J4 393 aa10.49□□□□□ -0.73
LMBR1-216ENST00000477983 GPKOWQ92917 476 aaPredicted RBP eCLIP10.49□□□□□ -0.732e-6■■□□□ 13
LMBR1-216ENST00000477983 GRM5P41594 1212 aa10.48□□□□□ -0.73
LMBR1-216ENST00000477983 NFX1Q12986 1120 aaKnown RBP10.48□□□□□ -0.73
LMBR1-216ENST00000477983 NR5A1Q13285 461 aa10.48□□□□□ -0.73
LMBR1-216ENST00000477983 AGERQ15109 404 aa10.48□□□□□ -0.73
LMBR1-216ENST00000477983 TIMP2P16035 220 aa10.47□□□□□ -0.73
LMBR1-216ENST00000477983 WFS1O76024 890 aa10.46□□□□□ -0.73
LMBR1-216ENST00000477983 BMP1P13497 986 aa10.46□□□□□ -0.73
LMBR1-216ENST00000477983 TRMT44Q8IYL2 757 aaKnown RBP10.46□□□□□ -0.73
LMBR1-216ENST00000477983 WDR4P57081 412 aaKnown RBP10.45□□□□□ -0.74
LMBR1-216ENST00000477983 ARID5BQ14865 1188 aa10.45□□□□□ -0.74
LMBR1-216ENST00000477983 MAP4K5Q9Y4K4 846 aa10.45□□□□□ -0.74
LMBR1-216ENST00000477983 TERTO14746 1132 aaKnown RBP10.44□□□□□ -0.74
LMBR1-216ENST00000477983 PDXDC2PQ6P474 469 aa10.44□□□□□ -0.74
LMBR1-216ENST00000477983 LRRN4Q8WUT4 740 aa10.44□□□□□ -0.74
LMBR1-216ENST00000477983 NR3C2P08235 984 aa10.43□□□□□ -0.74
LMBR1-216ENST00000477983 GOPCQ9HD26 462 aa10.43□□□□□ -0.74
LMBR1-216ENST00000477983 MRPL14Q6P1L8 145 aaKnown RBP10.42□□□□□ -0.74
LMBR1-216ENST00000477983 ZFP42Q96MM3 310 aa10.42□□□□□ -0.74
LMBR1-216ENST00000477983 FKBPLQ9UIM3 349 aa10.41□□□□□ -0.74
LMBR1-216ENST00000477983 ZC3H4Q9UPT8 1303 aaKnown RBP10.4□□□□□ -0.74
LMBR1-216ENST00000477983 NR6A1Q15406 480 aa10.4□□□□□ -0.74
LMBR1-216ENST00000477983 ITPKCQ96DU7 683 aa10.4□□□□□ -0.74
LMBR1-216ENST00000477983 MAGEB6P1A0A0J9YX57 407 aa10.39□□□□□ -0.75
LMBR1-216ENST00000477983 ZIC2O95409 532 aaPredicted RBP10.39□□□□□ -0.75
LMBR1-216ENST00000477983 ERFEQ4G0M1 354 aa10.39□□□□□ -0.75
LMBR1-216ENST00000477983 WIPF1O43516 503 aa10.38□□□□□ -0.75
LMBR1-216ENST00000477983 AP1G2O75843 785 aa10.38□□□□□ -0.75
LMBR1-216ENST00000477983 SCARF1Q14162 830 aa10.38□□□□□ -0.75
LMBR1-216ENST00000477983 LCE2CQ5TA81 110 aa10.38□□□□□ -0.75
LMBR1-216ENST00000477983 VASH1Q7L8A9 365 aaPredicted RBP10.38□□□□□ -0.75
LMBR1-216ENST00000477983 NPAS3Q8IXF0 933 aa10.38□□□□□ -0.75
LMBR1-216ENST00000477983 ZFAND3Q9H8U3 227 aa10.38□□□□□ -0.75
LMBR1-216ENST00000477983 NXF1Q9UBU9 619 aaKnown RBP10.38□□□□□ -0.75
LMBR1-216ENST00000477983 ATP1B4Q9UN42 357 aaPredicted RBP10.38□□□□□ -0.75
LMBR1-216ENST00000477983 RFC5P40937 340 aa10.36□□□□□ -0.75
LMBR1-216ENST00000477983 PURBQ96QR8 312 aaKnown RBP10.36□□□□□ -0.75
LMBR1-216ENST00000477983 ARHGAP9Q9BRR9 750 aa10.36□□□□□ -0.75
LMBR1-216ENST00000477983 GPSM3Q9Y4H4 160 aa10.36□□□□□ -0.75
LMBR1-216ENST00000477983 FSHRP23945 695 aa10.35□□□□□ -0.75
LMBR1-216ENST00000477983 CARD14Q9BXL6 1004 aa10.35□□□□□ -0.75
LMBR1-216ENST00000477983 CCDC116Q8IYX3 515 aa10.34□□□□□ -0.75
LMBR1-216ENST00000477983 OCSTAMPQ9BR26 566 aa10.34□□□□□ -0.75
LMBR1-216ENST00000477983 CDV3Q9UKY7 258 aaKnown RBP10.34□□□□□ -0.75
LMBR1-216ENST00000477983 EMILIN1Q9Y6C2 1016 aa10.34□□□□□ -0.75
LMBR1-216ENST00000477983 USP17L8P0C7I0 530 aa10.33□□□□□ -0.76
LMBR1-216ENST00000477983 PTK2Q05397 1052 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms